# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00046.fasta.nr -Q ../query/FLJ00046.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00046, 169 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7824868 sequences Expectation_n fit: rho(ln(x))= 4.2137+/-0.00018; mu= 11.0119+/- 0.010 mean_var=59.7340+/-11.914, 0's: 43 Z-trim: 59 B-trim: 3135 in 1/64 Lambda= 0.165945 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|10440422|dbj|BAB15744.1| FLJ00046 protein [Homo ( 169) 1117 275.2 3.1e-72 gi|10440361|dbj|BAB15716.1| FLJ00015 protein [Homo ( 307) 1106 272.9 2.9e-71 gi|2935597|gb|AAC05172.1| R29368_2 [Homo sapiens] ( 344) 1106 272.9 3.2e-71 gi|23397687|ref|NP_690882.1| egf-like module conta ( 681) 1106 273.2 5.1e-71 gi|23397693|ref|NP_690885.1| egf-like module conta ( 719) 1106 273.2 5.3e-71 gi|119604854|gb|EAW84448.1| egf-like module contai ( 719) 1106 273.2 5.3e-71 gi|23397685|ref|NP_690881.1| egf-like module conta ( 730) 1106 273.2 5.4e-71 gi|119604851|gb|EAW84445.1| egf-like module contai ( 731) 1106 273.2 5.4e-71 gi|23397691|ref|NP_690884.1| egf-like module conta ( 763) 1106 273.3 5.5e-71 gi|194384904|dbj|BAG60858.1| unnamed protein produ ( 765) 1106 273.3 5.6e-71 gi|119604852|gb|EAW84446.1| egf-like module contai ( 768) 1106 273.3 5.6e-71 gi|23397683|ref|NP_690880.1| egf-like module conta ( 774) 1106 273.3 5.6e-71 gi|119604853|gb|EAW84447.1| egf-like module contai ( 779) 1106 273.3 5.6e-71 gi|23397689|ref|NP_690883.1| egf-like module conta ( 812) 1106 273.3 5.8e-71 gi|6650689|gb|AAF21974.1|AF114491_1 EGF-like modul ( 823) 1106 273.3 5.8e-71 gi|117558012|gb|AAI27006.1| Egf-like module contai ( 823) 1106 273.3 5.8e-71 gi|158256984|dbj|BAF84465.1| unnamed protein produ ( 823) 1106 273.3 5.8e-71 gi|108935835|sp|Q9UHX3.2|EMR2_HUMAN RecName: Full= ( 823) 1106 273.3 5.8e-71 gi|21929123|dbj|BAC06146.1| seven transmembrane he ( 837) 1099 271.6 1.9e-70 gi|62897341|dbj|BAD96611.1| egf-like module contai ( 810) 1094 270.4 4.2e-70 gi|115502166|sp|Q2Q426.1|EMR2_MACMU RecName: Full= ( 822) 1040 257.5 3.3e-66 gi|194213018|ref|XP_001495362.2| PREDICTED: simila (1183) 893 222.5 1.7e-55 gi|115502165|sp|Q2Q421.2|EMR2_CANFA RecName: Full= ( 830) 889 221.3 2.6e-55 gi|80973884|gb|ABB53647.1| EMR2 large isoform [Can ( 843) 889 221.4 2.6e-55 gi|73986586|ref|XP_542013.2| PREDICTED: similar to ( 982) 887 220.9 4e-55 gi|194213020|ref|XP_001495406.2| PREDICTED: simila ( 922) 876 218.3 2.4e-54 gi|73986588|ref|XP_542014.2| PREDICTED: similar to ( 787) 874 217.7 3e-54 gi|194680876|ref|XP_581260.4| PREDICTED: similar t ( 905) 872 217.3 4.6e-54 gi|119925630|ref|XP_001255085.1| PREDICTED: simila ( 481) 866 215.6 8e-54 gi|114675772|ref|XP_512446.2| PREDICTED: egf-like ( 827) 859 214.2 3.7e-53 gi|55729880|emb|CAH91667.1| hypothetical protein [ ( 437) 849 211.5 1.2e-52 gi|37182752|gb|AAQ89176.1| EMR3 [Homo sapiens] ( 600) 845 210.7 3e-52 gi|119604845|gb|EAW84439.1| egf-like module contai ( 600) 845 210.7 3e-52 gi|119604844|gb|EAW84438.1| egf-like module contai ( 606) 845 210.7 3e-52 gi|158255254|dbj|BAF83598.1| unnamed protein produ ( 652) 845 210.7 3.2e-52 gi|42559008|sp|Q9BY15.1|EMR3_HUMAN RecName: Full=E ( 652) 845 210.7 3.2e-52 gi|119604846|gb|EAW84440.1| egf-like module contai ( 652) 845 210.7 3.2e-52 gi|221042320|dbj|BAH12837.1| unnamed protein produ ( 526) 840 209.4 6.3e-52 gi|194213026|ref|XP_001495655.2| PREDICTED: simila ( 712) 796 199.0 1.2e-48 gi|80973886|gb|ABB53648.1| EMR3 [Canis familiaris] ( 648) 788 197.1 4.1e-48 gi|126323312|ref|XP_001377017.1| PREDICTED: simila ( 854) 751 188.3 2.3e-45 gi|126323310|ref|XP_001377005.1| PREDICTED: simila ( 574) 710 178.3 1.6e-42 gi|21929097|dbj|BAC06133.1| seven transmembrane he ( 929) 667 168.2 2.8e-39 gi|119589461|gb|EAW69055.1| egf-like module contai ( 542) 663 167.1 3.7e-39 gi|119589462|gb|EAW69056.1| egf-like module contai ( 659) 663 167.1 4.2e-39 gi|221041596|dbj|BAH12475.1| unnamed protein produ ( 709) 663 167.2 4.4e-39 gi|221041590|dbj|BAH12472.1| unnamed protein produ ( 745) 663 167.2 4.6e-39 gi|37747859|gb|AAH59395.1| EMR1 protein [Homo sapi ( 821) 663 167.2 4.9e-39 gi|114674948|ref|XP_001151417.1| PREDICTED: egf-li ( 821) 663 167.2 4.9e-39 gi|158256468|dbj|BAF84207.1| unnamed protein produ ( 821) 663 167.2 4.9e-39 >>gi|10440422|dbj|BAB15744.1| FLJ00046 protein [Homo sap (169 aa) initn: 1117 init1: 1117 opt: 1117 Z-score: 1453.0 bits: 275.2 E(): 3.1e-72 Smith-Waterman score: 1117; 100.000% identity (100.000% similar) in 169 aa overlap (1-169:1-169) 10 20 30 40 50 60 FLJ000 PAVTVAISAAFRPHLYGTPSRCWLQPEKGFIWGFLGPVCAIFSVNLVLFLVTLWILKNRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 PAVTVAISAAFRPHLYGTPSRCWLQPEKGFIWGFLGPVCAIFSVNLVLFLVTLWILKNRL 10 20 30 40 50 60 70 80 90 100 110 120 FLJ000 SSLNSEVSTLRNTRMLAFKATAQLFILGCTWCLGILQVGPAARVMAYLFTIINSLQGVFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 SSLNSEVSTLRNTRMLAFKATAQLFILGCTWCLGILQVGPAARVMAYLFTIINSLQGVFI 70 80 90 100 110 120 130 140 150 160 FLJ000 FLVYCLLSQQVREQYGKWSKGIRKLKTESEMHTLSSSAKADTSKPSTVN ::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 FLVYCLLSQQVREQYGKWSKGIRKLKTESEMHTLSSSAKADTSKPSTVN 130 140 150 160 >>gi|10440361|dbj|BAB15716.1| FLJ00015 protein [Homo sap (307 aa) initn: 1106 init1: 1106 opt: 1106 Z-score: 1435.5 bits: 272.9 E(): 2.9e-71 Smith-Waterman score: 1106; 99.408% identity (99.408% similar) in 169 aa overlap (1-169:139-307) 10 20 30 FLJ000 PAVTVAISAAFRPHLYGTPSRCWLQPEKGF :::::::::: ::::::::::::::::::: gi|104 FLTARNLTVVNYSSINRFMKKLMFPVGYGVPAVTVAISAASRPHLYGTPSRCWLQPEKGF 110 120 130 140 150 160 40 50 60 70 80 90 FLJ000 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT 170 180 190 200 210 220 100 110 120 130 140 150 FLJ000 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE 230 240 250 260 270 280 160 FLJ000 MHTLSSSAKADTSKPSTVN ::::::::::::::::::: gi|104 MHTLSSSAKADTSKPSTVN 290 300 >>gi|2935597|gb|AAC05172.1| R29368_2 [Homo sapiens] (344 aa) initn: 1106 init1: 1106 opt: 1106 Z-score: 1434.9 bits: 272.9 E(): 3.2e-71 Smith-Waterman score: 1106; 99.408% identity (99.408% similar) in 169 aa overlap (1-169:176-344) 10 20 30 FLJ000 PAVTVAISAAFRPHLYGTPSRCWLQPEKGF :::::::::: ::::::::::::::::::: gi|293 FLTARNLTVVNYSSINRFMKKLMFPVGYGVPAVTVAISAASRPHLYGTPSRCWLQPEKGF 150 160 170 180 190 200 40 50 60 70 80 90 FLJ000 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|293 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT 210 220 230 240 250 260 100 110 120 130 140 150 FLJ000 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|293 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE 270 280 290 300 310 320 160 FLJ000 MHTLSSSAKADTSKPSTVN ::::::::::::::::::: gi|293 MHTLSSSAKADTSKPSTVN 330 340 >>gi|23397687|ref|NP_690882.1| egf-like module containin (681 aa) initn: 1106 init1: 1106 opt: 1106 Z-score: 1431.2 bits: 273.2 E(): 5.1e-71 Smith-Waterman score: 1106; 99.408% identity (99.408% similar) in 169 aa overlap (1-169:513-681) 10 20 30 FLJ000 PAVTVAISAAFRPHLYGTPSRCWLQPEKGF :::::::::: ::::::::::::::::::: gi|233 FLTARNLTVVNYSSINRFMKKLMFPVGYGVPAVTVAISAASRPHLYGTPSRCWLQPEKGF 490 500 510 520 530 540 40 50 60 70 80 90 FLJ000 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|233 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT 550 560 570 580 590 600 100 110 120 130 140 150 FLJ000 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|233 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE 610 620 630 640 650 660 160 FLJ000 MHTLSSSAKADTSKPSTVN ::::::::::::::::::: gi|233 MHTLSSSAKADTSKPSTVN 670 680 >>gi|23397693|ref|NP_690885.1| egf-like module containin (719 aa) initn: 1106 init1: 1106 opt: 1106 Z-score: 1430.9 bits: 273.2 E(): 5.3e-71 Smith-Waterman score: 1106; 99.408% identity (99.408% similar) in 169 aa overlap (1-169:551-719) 10 20 30 FLJ000 PAVTVAISAAFRPHLYGTPSRCWLQPEKGF :::::::::: ::::::::::::::::::: gi|233 FLTARNLTVVNYSSINRFMKKLMFPVGYGVPAVTVAISAASRPHLYGTPSRCWLQPEKGF 530 540 550 560 570 580 40 50 60 70 80 90 FLJ000 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|233 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT 590 600 610 620 630 640 100 110 120 130 140 150 FLJ000 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|233 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE 650 660 670 680 690 700 160 FLJ000 MHTLSSSAKADTSKPSTVN ::::::::::::::::::: gi|233 MHTLSSSAKADTSKPSTVN 710 >>gi|119604854|gb|EAW84448.1| egf-like module containing (719 aa) initn: 1106 init1: 1106 opt: 1106 Z-score: 1430.9 bits: 273.2 E(): 5.3e-71 Smith-Waterman score: 1106; 99.408% identity (99.408% similar) in 169 aa overlap (1-169:551-719) 10 20 30 FLJ000 PAVTVAISAAFRPHLYGTPSRCWLQPEKGF :::::::::: ::::::::::::::::::: gi|119 FLTARNLTVVNYSSINRFMKKLMFPVGYGVPAVTVAISAASRPHLYGTPSRCWLQPEKGF 530 540 550 560 570 580 40 50 60 70 80 90 FLJ000 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT 590 600 610 620 630 640 100 110 120 130 140 150 FLJ000 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE 650 660 670 680 690 700 160 FLJ000 MHTLSSSAKADTSKPSTVN ::::::::::::::::::: gi|119 MHTLSSSAKADTSKPSTVN 710 >>gi|23397685|ref|NP_690881.1| egf-like module containin (730 aa) initn: 1106 init1: 1106 opt: 1106 Z-score: 1430.8 bits: 273.2 E(): 5.4e-71 Smith-Waterman score: 1106; 99.408% identity (99.408% similar) in 169 aa overlap (1-169:562-730) 10 20 30 FLJ000 PAVTVAISAAFRPHLYGTPSRCWLQPEKGF :::::::::: ::::::::::::::::::: gi|233 FLTARNLTVVNYSSINRFMKKLMFPVGYGVPAVTVAISAASRPHLYGTPSRCWLQPEKGF 540 550 560 570 580 590 40 50 60 70 80 90 FLJ000 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|233 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT 600 610 620 630 640 650 100 110 120 130 140 150 FLJ000 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|233 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE 660 670 680 690 700 710 160 FLJ000 MHTLSSSAKADTSKPSTVN ::::::::::::::::::: gi|233 MHTLSSSAKADTSKPSTVN 720 730 >>gi|119604851|gb|EAW84445.1| egf-like module containing (731 aa) initn: 1106 init1: 1106 opt: 1106 Z-score: 1430.8 bits: 273.2 E(): 5.4e-71 Smith-Waterman score: 1106; 99.408% identity (99.408% similar) in 169 aa overlap (1-169:563-731) 10 20 30 FLJ000 PAVTVAISAAFRPHLYGTPSRCWLQPEKGF :::::::::: ::::::::::::::::::: gi|119 FLTARNLTVVNYSSINRFMKKLMFPVGYGVPAVTVAISAASRPHLYGTPSRCWLQPEKGF 540 550 560 570 580 590 40 50 60 70 80 90 FLJ000 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT 600 610 620 630 640 650 100 110 120 130 140 150 FLJ000 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE 660 670 680 690 700 710 160 FLJ000 MHTLSSSAKADTSKPSTVN ::::::::::::::::::: gi|119 MHTLSSSAKADTSKPSTVN 720 730 >>gi|23397691|ref|NP_690884.1| egf-like module containin (763 aa) initn: 1106 init1: 1106 opt: 1106 Z-score: 1430.6 bits: 273.3 E(): 5.5e-71 Smith-Waterman score: 1106; 99.408% identity (99.408% similar) in 169 aa overlap (1-169:595-763) 10 20 30 FLJ000 PAVTVAISAAFRPHLYGTPSRCWLQPEKGF :::::::::: ::::::::::::::::::: gi|233 FLTARNLTVVNYSSINRFMKKLMFPVGYGVPAVTVAISAASRPHLYGTPSRCWLQPEKGF 570 580 590 600 610 620 40 50 60 70 80 90 FLJ000 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|233 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT 630 640 650 660 670 680 100 110 120 130 140 150 FLJ000 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|233 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE 690 700 710 720 730 740 160 FLJ000 MHTLSSSAKADTSKPSTVN ::::::::::::::::::: gi|233 MHTLSSSAKADTSKPSTVN 750 760 >>gi|194384904|dbj|BAG60858.1| unnamed protein product [ (765 aa) initn: 1106 init1: 1106 opt: 1106 Z-score: 1430.6 bits: 273.3 E(): 5.6e-71 Smith-Waterman score: 1106; 99.408% identity (99.408% similar) in 169 aa overlap (1-169:597-765) 10 20 30 FLJ000 PAVTVAISAAFRPHLYGTPSRCWLQPEKGF :::::::::: ::::::::::::::::::: gi|194 FLTARNLTVVNYSSINRFMKKLMFPVGYGVPAVTVAISAASRPHLYGTPSRCWLQPEKGF 570 580 590 600 610 620 40 50 60 70 80 90 FLJ000 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT 630 640 650 660 670 680 100 110 120 130 140 150 FLJ000 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 WCLGILQVGPAARVMAYLFTIINSLQGVFIFLVYCLLSQQVREQYGKWSKGIRKLKTESE 690 700 710 720 730 740 160 FLJ000 MHTLSSSAKADTSKPSTVN ::::::::::::::::::: gi|194 MHTLSSSAKADTSKPSTVN 750 760 169 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 16:35:56 2009 done: Fri Feb 27 16:40:13 2009 Total Scan time: 614.370 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]