hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna/full/aisin/as00044/interpro/cnk_1/seq.in
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Query:  as00044  1051

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SWIM     SWIM zinc finger                                18.1       0.14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SWIM       1/1     201   238 ..     1    36 []    18.1     0.14

Alignments of top-scoring domains:
SWIM: domain 1 of 1, from 201 to 238: score 18.1, E = 0.14
                   *->yrVqldld....eeatCsCpdfqlsgipCkHalAvllalg<-*
                      y+V++++d+ +    +C C +  ++ ++C H++A+ l++    
     as00044   201    YHVSISFDrckiTSVSCGCDN--RDLFYCAHVVALSLYRI    238  

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