hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna/full/aisin/as00040/interpro/cnk_1/seq.in
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Query:  as00040  1060

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ANK      ankyrin repeats                                229.6    2.7e-64   8
VPS9     Domain present in VPS9                          50.2    2.8e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
VPS9       1/1     271   389 ..     1   120 []    50.2  2.8e-10
ANK        1/8     472   501 ..     1    30 []    28.9   0.0007
ANK        2/8     505   534 ..     1    30 []    23.1    0.039
ANK        3/8     538   568 ..     1    30 []    34.2  1.8e-05
ANK        4/8     574   603 ..     1    30 []    30.6  0.00021
ANK        5/8     753   782 ..     1    30 []    29.0  0.00063
ANK        6/8     786   815 ..     1    30 []    28.9   0.0007
ANK        7/8     819   848 ..     1    30 []    40.1  2.9e-07
ANK        8/8     852   881 ..     1    30 []    28.0   0.0013

Alignments of top-scoring domains:
VPS9: domain 1 of 1, from 271 to 389: score 50.2, E = 2.8e-10
                   *->FveieqielkflqlskmYSPsdKikcLLrackviytlletqsKgeva
                         i  ++ ++ ql k  SP+ K++cL ++  +i+ +      +e +
     as00040   271    SFNIPRAKRELAQLNKCTSPQQKLVCLRKVVQLITQSPSQRVNLETM 317  

                   GADdFlPvLiYvIikcdprdLllnveYieeflepslltGeegYYLtsLeA
                    ADd+l+vL Y ++k   +  + n  Yi+ f+  sl   e gY Lts+eA
     as00040   318 CADDLLSVLLYLLVKTEIPNWMANLSYIKNFRFSSLAKDELGYCLTSFEA 367  

                   ALafikgLteadalilspedeee<-*
                   A ++i   +  +a +  +e + +   
     as00040   368 AIEYIRQ-GSLSAKPPESEGFGD    389  

ANK: domain 1 of 8, from 472 to 501: score 28.9, E = 0.0007
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+TpLH+Aa  g+ +++ lL++kga +na   
     as00040   472    RGHTPLHVAAVCGQASLIDLLVSKGAMVNA    501  

ANK: domain 2 of 8, from 505 to 534: score 23.1, E = 0.039
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G TpLHlA+++g+ +v  lLl ++a+ ++   
     as00040   505    HGATPLHLACQKGYQSVTLLLLHYKASAEV    534  

ANK: domain 3 of 8, from 538 to 568: score 34.2, E = 1.8e-05
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                      +G+TpLHlA+ +g++++vk+L+ ++++++ +   
     as00040   538    NGNTPLHLACTYGHEDCVKALVYYDVeSCRL    568  

ANK: domain 4 of 8, from 574 to 603: score 30.6, E = 0.00021
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+TpLH+Aa++g+  v++ Ll++ga+ ++   
     as00040   574    KGDTPLHIAARWGYQGVIETLLQNGASTEI    603  

ANK: domain 5 of 8, from 753 to 782: score 29.0, E = 0.00063
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dG +pLH+Aa +g+ +++ lLl++ga+  a   
     as00040   753    DGSSPLHVAALHGRADLIPLLLKHGANAGA    782  

ANK: domain 6 of 8, from 786 to 815: score 28.9, E = 0.0007
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      d   pLHlA++ g+  vvk+Lld++a +n+   
     as00040   786    DQAVPLHLACQQGHFQVVKCLLDSNAKPNK    815  

ANK: domain 7 of 8, from 819 to 848: score 40.1, E = 2.9e-07
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+TpL +A++ g++e+v lLl++ga+ina   
     as00040   819    SGNTPLIYACSGGHHELVALLLQHGASINA    848  

ANK: domain 8 of 8, from 852 to 881: score 28.0, E = 0.0013
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+T+LH A+ ++++ vv+lLl +ga++ +   
     as00040   852    KGNTALHEAVIEKHVFVVELLLLHGASVQV    881  

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