hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna/full/aisin/as00040/interpro/cnk_1/seq.in
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Query:  as00040  1060

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ank      Ankyrin repeat                                 281.7    9.2e-81   8
VPS9     Vacuolar sorting protein 9 (VPS9) domain        61.3      2e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
VPS9       1/1     274   377 ..     1   120 []    61.3    2e-14
Ank        1/8     472   504 ..     1    33 []    39.2  9.2e-08
Ank        2/8     505   537 ..     1    33 []    34.2    3e-06
Ank        3/8     538   570 ..     1    33 []    34.0  3.5e-06
Ank        4/8     574   606 ..     1    33 []    41.3  2.2e-08
Ank        5/8     753   785 ..     1    33 []    38.4  1.7e-07
Ank        6/8     786   818 ..     1    33 []    32.8  7.9e-06
Ank        7/8     819   851 ..     1    33 []    46.5  5.8e-10
Ank        8/8     852   884 ..     1    33 []    36.6  5.6e-07

Alignments of top-scoring domains:
VPS9: domain 1 of 1, from 274 to 377: score 61.3, E = 2e-14
                   *->veeakqeLrelqYeyySPrdKlqcllrccklIf.nalknakgeneaP
                       + ak eL +l+ +  SP+ Kl cl ++++lI+++ +++++ e    
     as00040   274    IPRAKRELAQLN-KCTSPQQKLVCLRKVVQLITqSPSQRVNLE---- 315  

                   TDPmCGYRGepsADdfLPlLiYvilkanpphLlsnieYisrFlnpPisrl
                             + ADd+L++L Y + k+  p   +n+ Yi  F+    s l
     as00040   316 ---------TMCADDLLSVLLYLLVKTEIPNWMANLSYIKNFRFS--S-L 353  

                   LsGEegYYLTsLeaAlaFIkslde<-*
                      E gY+LTs+eaA++ I        
     as00040   354 AKDELGYCLTSFEAAIEYIRQGSL    377  

Ank: domain 1 of 8, from 472 to 504: score 39.2, E = 9.2e-08
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G TPLH+Aa +g+++++ lL+s+GA +na+d    
     as00040   472    RGHTPLHVAAVCGQASLIDLLVSKGAMVNATDY    504  

Ank: domain 2 of 8, from 505 to 537: score 34.2, E = 3e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G TPLHlA+++g+ +v  lLl + A+  +qd+   
     as00040   505    HGATPLHLACQKGYQSVTLLLLHYKASAEVQDN    537  

Ank: domain 3 of 8, from 538 to 570: score 34.0, E = 3.5e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+TPLHlA+ +g++++vk L+++  + +  d    
     as00040   538    NGNTPLHLACTYGHEDCVKALVYYDVESCRLDI    570  

Ank: domain 4 of 8, from 574 to 606: score 41.3, E = 2.2e-08
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+TPLH+Aa++g+  v++ Ll++GA+  +q++   
     as00040   574    KGDTPLHIAARWGYQGVIETLLQNGASTEIQNR    606  

Ank: domain 5 of 8, from 753 to 785: score 38.4, E = 1.7e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dG +PLH+Aal+g+++++ lLl++GA+  a++    
     as00040   753    DGSSPLHVAALHGRADLIPLLLKHGANAGARNA    785  

Ank: domain 6 of 8, from 786 to 818: score 32.8, E = 7.9e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      d   PLHlA++ g+ +vvk+Ll+  A +n +d    
     as00040   786    DQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDL    818  

Ank: domain 7 of 8, from 819 to 851: score 46.5, E = 5.8e-10
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+TPL +A++ g++e+v lLl++GA++na ++   
     as00040   819    SGNTPLIYACSGGHHELVALLLQHGASINASNN    851  

Ank: domain 8 of 8, from 852 to 884: score 36.6, E = 5.6e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+LH A++  ++ vv+lLl +GA++ + ++   
     as00040   852    KGNTALHEAVIEKHVFVVELLLLHGASVQVLNK    884  

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