hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna/full/aisin/as00036/interpro/cnk_1/seq.in
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Query:  as00036  706

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
ABC_tran     ABC transporter                            185.8      7e-52   1
ABC_membrane ABC transporter transmembrane region        70.4    3.7e-17   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
ABC_membrane   1/1      99   412 ..     1   286 []    70.4  3.7e-17
ABC_tran       1/1     487   669 ..     1   199 []   185.8    7e-52

Alignments of top-scoring domains:
ABC_membrane: domain 1 of 1, from 99 to 412: score 70.4, E = 3.7e-17
                   *->lliailllilagatalvtfplllgrlldsgfplsdgnddhearssli
                       l+++++l+l  at  +   ++l+++++    l + n   ea +s  
     as00036    99    ALAILFSLLLMQATRNA-ADWWLSHWISQ---LKAENSSQEAQPSTS 141  

                   slails...................................llavfvlig
                     +++  +++    ++++   +  + ++  ++++++ +   +++++++ +
     as00036   142 PASMGLfspqlllfspgnlyipvfplpkaapngssdirfylTVYATIAGV 191  

                   lllqgsfyllagerlgqrlrkrlfrallrqilglfdsffdtnsvGeltsR
                    +l++ ++ + +   + +++ +l+r+ll+ +l ++  ff+ +++G++++R
     as00036   192 NSLCTLLRAVLFAAGTLQAAATLHRRLLHRVLMAPVTFFNATPTGRILNR 241  

                   ltnDvekirdglgeklgllfqslatvvgglivmfyyswkLtLillailpl
                   +++Dv+  +d+l++ l +l+ + a ++g+l+v  +  ++L+L+l +++  
     as00036   242 FSSDVACADDSLPFILNILLANAAGLLGLLAVLGSGLPWLLLLLPPLSIM 291  

                   lillsavlakklrklsrkeqkayakagsvaeEslsgirTVkafgrEeyel
                   ++ +++ +   +r+l+r+ +   ++++s++ ++l g+ + +a g+  +++
     as00036   292 YYHVQRHYRASSRELRRLGSLTLSPLYSHLADTLAGLSVLRATGATYRFE 341  

                   erfdkaledaekagikkaiiagllfgitqlisylsyalalwfGgylvasv
                   e+    +e +++ ++   +++ +l++++ql++ + ++ a+  ++      
     as00036   342 EENLRLFELNQRCQFATSATMQWLDIRLQLMGAA-VVSAIAGIALV---Q 387  

                   isggls.vgtlfaflslgnqligpl<-*
                   + +gl ++g + ++ls+ ++l+g l   
     as00036   388 HQQGLAnPGLVGLSLSYALSLTGLL    412  

ABC_tran: domain 1 of 1, from 487 to 669: score 185.8, E = 7e-52
                   *->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
                      Ge+l++vG+ G+GKS+LL ++ +ll+p +G++lldG  d s+l+   
     as00036   487    GEKLGIVGRTGSGKSSLLLVLFRLLEPSSGRVLLDG-VDTSQLE--- 529  

                   erlellrknigvvfQdptlfpnpeltvreniafglrlslglskdeqddrl
                     l+ lr +++ ++Q+p+lf   ++tvren++      +gl kd++ +++
     as00036   530 --LAQLRSQLAIIPQEPFLF---SGTVRENLDP-----QGLHKDRALWQA 569  

                   .kkagaeelLerlglgyddlldrrpgtLSGGqkQRvaiARaLltkpklLl
                    k ++++e+++++g  +   l++ +++LS Gq+Q +++ARaLlt++k+L+
     as00036   570 lKQCHLSEVITSMGGLD-GELGEGGRSLSLGQRQLLCLARALLTDAKILC 618  

                   LDEPTagLDpasraqllellrelrqqggTvllvtHdldlldrlaDrilvl
                    DE+Ta+ D ++ + l++++ +  + ++Tvl++ H+l+  +  +Dr+lvl
     as00036   619 IDEATASVDQKTDQLLQQTICKRFA-NKTVLTIAHRLNT-ILNSDRVLVL 666  

                   edG<-*
                   ++G   
     as00036   667 QAG    669  

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