# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00035.fasta.huge -Q ../query/FLJ00035.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00035, 187 aa vs ./tmplib.10216 library 2210807 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.4432+/-0.00332; mu= 17.3519+/- 0.225 mean_var=60.7545+/-13.477, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.164545 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1120 ( 1024 res) hg02941 (1024) 81 27.8 2 KIAA1231 ( 1061 res) fh08195s1 (1061) 81 27.8 2 KIAA1123 ( 1717 res) fh01458 (1717) 82 28.4 2.3 KIAA2034 ( 1571 res) ah04445 (1571) 79 27.6 3.5 KIAA1649 ( 424 res) fk12339 ( 424) 74 25.6 3.8 KIAA1208 ( 950 res) fj07955 ( 950) 76 26.6 4.3 KIAA0182 ( 1157 res) ha02329s1 (1157) 75 26.5 5.7 KIAA0051 ( 1678 res) ha00940 (1678) 76 26.9 6 KIAA0439 ( 995 res) hj00462 ( 995) 74 26.1 6.2 KIAA1276 ( 1068 res) fh00139s1 (1068) 74 26.2 6.4 FLJ00257 ( 820 res) sj09683 ( 820) 73 25.8 6.5 KIAA0917 ( 648 res) hk07974s2 ( 648) 71 25.2 7.9 KIAA0466 ( 1214 res) pg00625 (1214) 73 26.0 8.1 KIAA0677 ( 1073 res) hk02635 (1073) 72 25.7 8.9 KIAA2029 ( 1021 res) pj01256 (1021) 71 25.4 10 FLJ00067 ( 574 res) as00067 ( 574) 69 24.6 10 KIAA0489 ( 192 res) hg01128 ( 192) 63 22.5 15 KIAA0706 ( 1123 res) pj01355 (1123) 69 25.0 15 KIAA1393 ( 500 res) hj06562 ( 500) 66 23.8 16 KIAA1583 ( 435 res) fj06651 ( 435) 65 23.5 17 KIAA1892 ( 476 res) fk04164 ( 476) 65 23.5 18 FLJ00143 ( 373 res) sh04531 ( 373) 64 23.2 18 FLJ00159 ( 567 res) sh06608 ( 567) 65 23.7 20 KIAA1141 ( 914 res) hk01833 ( 914) 66 24.2 22 KIAA1439 ( 561 res) hg01641b ( 561) 64 23.4 23 KIAA1388 ( 599 res) fj06552 ( 599) 64 23.5 24 KIAA1512 ( 2010 res) fg04660y1 (2010) 68 25.2 25 KIAA0762 ( 724 res) hk04668s1 ( 724) 64 23.6 27 KIAA0258 ( 410 res) ha07053 ( 410) 62 22.7 27 FLJ00359 ( 1056 res) sh03991 (1056) 65 24.0 28 KIAA1653 ( 193 res) fg06691 ( 193) 59 21.6 29 KIAA0514 ( 483 res) hf00310 ( 483) 62 22.8 29 KIAA0863 ( 1181 res) hk06535 (1181) 65 24.1 30 KIAA1097 ( 980 res) hk07058 ( 980) 64 23.8 31 KIAA0394 ( 417 res) hf00236 ( 417) 61 22.5 32 FLJ00167 ( 181 res) sh07420 ( 181) 58 21.3 32 KIAA0793 ( 1055 res) hk05692 (1055) 64 23.8 33 KIAA1438 ( 1075 res) hk07374s1 (1075) 64 23.8 33 KIAA0562 ( 931 res) hh01779 ( 931) 63 23.5 36 KIAA0893 ( 974 res) hk08702 ( 974) 63 23.5 37 KIAA1586 ( 739 res) fj08085 ( 739) 62 23.1 37 KIAA0124 ( 682 res) ha01534 ( 682) 61 22.8 42 FLJ00199 ( 383 res) sj03574 ( 383) 59 22.0 42 KIAA0918 ( 966 res) hk09360(revised) ( 966) 62 23.3 43 FLJ00140 ( 579 res) sh03502 ( 579) 60 22.5 45 FLJ00161 ( 596 res) sh06688 ( 596) 60 22.5 46 KIAA0019 ( 838 res) ha00537 ( 838) 61 23.0 47 FLJ00175 ( 1516 res) sj00758 (1516) 63 23.8 47 KIAA1563 ( 1658 res) fh20460s1 (1658) 63 23.9 50 KIAA1737 ( 400 res) pj00125 ( 400) 58 21.8 51 >>KIAA1120 ( 1024 res) hg02941 (1024 aa) initn: 77 init1: 53 opt: 81 Z-score: 101.0 bits: 27.8 E(): 2 Smith-Waterman score: 81; 46.875% identity (78.125% similar) in 32 aa overlap (16-44:76-107) 10 20 30 40 FLJ000 QFRIYYTHCYLNTHRKLLSSPRPLQSISRA---HIIVRPLFSSLQ .:: . :::. :::: ...:. :.:::. KIAA11 GFLVFVSIIDIVVSLASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLK 50 60 70 80 90 100 50 60 70 80 90 100 FLJ000 PMFRAYRAYHVYYITIRHKPKQLAAGLLNIATAEIFSGLEEEPLQMSTNFSNFLVYGMKS :. KIAA11 PIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNRSDCMAANYRWVHHKYNFD 110 120 130 140 150 160 >>KIAA1231 ( 1061 res) fh08195s1 (1061 aa) initn: 44 init1: 44 opt: 81 Z-score: 100.9 bits: 27.8 E(): 2 Smith-Waterman score: 91; 25.455% identity (53.939% similar) in 165 aa overlap (32-180:199-362) 10 20 30 40 50 60 FLJ000 FRIYYTHCYLNTHRKLLSSPRPLQSISRAHIIVRPLFSSLQPMFRAYR-AYHVYYITIRH ..::: . :. . ::. ..:::: ::.. KIAA12 VSLDKGDRKERDLHEDLWFELSDETLCNWMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKN 170 180 190 200 210 220 70 80 90 100 110 FLJ000 -KPKQ-----LAAGLLNIATAEIFSGLEEEPLQMSTNFSNFLVY--GMKSLKLTALCSTI .::: ::. .... .: . ::: . . .:. : . . .. : . . KIAA12 VEPKQELKVWYAASYAEFVNQKIHDISEEERKVLREQEKNWPCYECNRRFISSEQLQQHL 230 240 250 260 270 280 120 130 140 150 160 FLJ000 GLHDARGRVGKKV-ARSLVVGIHRLPLKGVLPGW-----RM-LLEEKRERHETGTLQSCH . :: . : ... .:. : .:. : :: :. . :. :. . :: . : KIAA12 NSHDEKLDVFSRTRGRGRGRGKRRFG-PGRRPGRPPKFIRLEITSENGEKSDDGTQDLLH 290 300 310 320 330 340 170 180 FLJ000 HGNVTQWHRACSSLLFSFLFFF . :. .: . : KIAA12 FPTKEQFDEAEPATLNGLDQPEQTTIPIPQLPQETQSSLEHEPETHTLHLQPQHEESVVP 350 360 370 380 390 400 >>KIAA1123 ( 1717 res) fh01458 (1717 aa) initn: 75 init1: 51 opt: 82 Z-score: 100.0 bits: 28.4 E(): 2.3 Smith-Waterman score: 82; 46.875% identity (78.125% similar) in 32 aa overlap (16-44:832-863) 10 20 30 40 FLJ000 QFRIYYTHCYLNTHRKLLSSPRPLQSISRAH---IIVRPLFSSLQ .:: . :::. ::::. ..:. :.:::. KIAA11 GLLVLISVIDILVSMVSDSGTKILGMLRVLRLLRTLRPLRVISRAQGLKLVVETLMSSLK 810 820 830 840 850 860 50 60 70 80 90 100 FLJ000 PMFRAYRAYHVYYITIRHKPKQLAAGLLNIATAEIFSGLEEEPLQMSTNFSNFLVYGMKS :. KIAA11 PIGNIVVICCAFFIIFGILGVQLFKGKFFVCQGEDTRNITNKSDCAEASYRWVRHKYNFD 870 880 890 900 910 920 >>KIAA2034 ( 1571 res) ah04445 (1571 aa) initn: 76 init1: 49 opt: 79 Z-score: 96.6 bits: 27.6 E(): 3.5 Smith-Waterman score: 79; 24.828% identity (53.793% similar) in 145 aa overlap (34-174:829-971) 10 20 30 40 50 60 FLJ000 IYYTHCYLNTHRKLLSSPRPLQSISRAHIIVRPLFSSLQPMFRAYRAYHVYYITIRHKPK .: .:::: : . . .. . KIAA20 GELAEQLEQARRGKGAWEKTRLALEAEVSELRAELSSLQTA-RQEGEQRRRRLELQLQEV 800 810 820 830 840 850 70 80 90 100 110 120 FLJ000 QLAAGLLNIATAEIFSGLEEEPLQMSTNFSNFLVYGM-KSLKLTA-LCST-IGLHDARGR : :: . : :: :.. .. : :. : . :...:. : :: ::::. KIAA20 QGRAGDGERARAEAAEKLQRAQAELE-NVSGALNEAESKTIRLSKELSSTEAQLHDAQEL 860 870 880 890 900 910 130 140 150 160 170 FLJ000 VGKKVARSLVVGIHRLPLKGVLPGWRMLLEEKRE-RHETGTLQSCHHGNVTQWHRACSSL . ... .:..: . ... : : :::. :...: . ......:.: KIAA20 LQEETRAKLALGSRVRAMEAEAAGLREQLEEEAAARERAGRELQTAQAQLSEWRRRQEEE 920 930 940 950 960 970 180 FLJ000 LFSFLFFF KIAA20 AGALEAGEEARRRAAREAEALTQRLAEKTETVDRLERGRRRLQQELDDATMDLEQQRQLV 980 990 1000 1010 1020 1030 >>KIAA1649 ( 424 res) fk12339 (424 aa) initn: 56 init1: 56 opt: 74 Z-score: 96.0 bits: 25.6 E(): 3.8 Smith-Waterman score: 74; 35.556% identity (64.444% similar) in 45 aa overlap (112-155:63-107) 90 100 110 120 130 140 FLJ000 EEEPLQMSTNFSNFLVYGMKSLKLTALCSTIGLHDARGRVGKKVAR-SLVVGIHRLPLKG ::: ::: ..: : :: .:. :. .:: KIAA16 VRSRVGIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKG 40 50 60 70 80 90 150 160 170 180 FLJ000 VLPGWRMLLEEKRERHETGTLQSCHHGNVTQWHRACSSLLFSFLFFF . : .:. .... KIAA16 KVQDAREMLNSRKQQTTVPQKPRQVADAREKISLKRSSPAAFINPPIGTVTPALKLTKTI 100 110 120 130 140 150 >>KIAA1208 ( 950 res) fj07955 (950 aa) initn: 85 init1: 56 opt: 76 Z-score: 95.0 bits: 26.6 E(): 4.3 Smith-Waterman score: 76; 23.636% identity (65.455% similar) in 55 aa overlap (84-138:683-736) 60 70 80 90 100 110 FLJ000 YYITIRHKPKQLAAGLLNIATAEIFSGLEEEPLQMSTNFSNFLVYGMKSLKLTALCSTIG : .:.. .. .:. ... :... . . . KIAA12 HMIDRIVMQELQDMFPEEFDKTSFHKVRHSEDMQFAFSYFYYLMSAVQPLNISQVFDEVD 660 670 680 690 700 710 120 130 140 150 160 170 FLJ000 LHDARGRVGKKVARSLVVGIHRLPLKGVLPGWRMLLEEKRERHETGTLQSCHHGNVTQWH : : .. . :.:.. ::.::: KIAA12 T-DQSGVLSDREIRTLATRIHELPLSLQDLTGLEHMLINCSKMLPADITQLNNIPPTQES 720 730 740 750 760 770 >>KIAA0182 ( 1157 res) ha02329s1 (1157 aa) initn: 41 init1: 41 opt: 75 Z-score: 92.8 bits: 26.5 E(): 5.7 Smith-Waterman score: 75; 33.962% identity (58.491% similar) in 53 aa overlap (36-88:224-273) 10 20 30 40 50 60 FLJ000 YTHCYLNTHRKLLSSPRPLQSISRAHIIVRPLFSSLQPMFRAYRAYHVYYITIRHKPKQL : .:: :. . :.:.. .:. : .: KIAA01 YLAPHPFPHPAFRMDDSYCLSALRSPFYPIPTPGSLPPLHPS--AMHLHLSGVRY-PPEL 200 210 220 230 240 250 70 80 90 100 110 120 FLJ000 AAGLLNIATAEIFSGLEEEPLQMSTNFSNFLVYGMKSLKLTALCSTIGLHDARGRVGKKV . . : .: .::: : ::: KIAA01 SHSSLAALHSERMSGLSAERLQMDEELRREREREREREREREADREREKEREREREKERE 260 270 280 290 300 310 >>KIAA0051 ( 1678 res) ha00940 (1678 aa) initn: 49 init1: 49 opt: 76 Z-score: 92.4 bits: 26.9 E(): 6 Smith-Waterman score: 76; 29.167% identity (60.417% similar) in 48 aa overlap (131-176:31-78) 110 120 130 140 150 FLJ000 KSLKLTALCSTIGLHDARGRVGKKVARSLVVGIHRLPLKGVLPGWRMLLEE--KRERHET .:. : .:: . :. :: .:.:... KIAA00 LPPSAPPRFHGFLSRDSGSSAMSAADEVDGLGVARPHYGSVLDNERLTAEEMDERRRQNV 10 20 30 40 50 60 160 170 180 FLJ000 GTLQSCHHGNVTQWHRACSSLLFSFLFFF . :: .. .: .:: KIAA00 AYEYLCHLEEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDRE 70 80 90 100 110 120 >>KIAA0439 ( 995 res) hj00462 (995 aa) initn: 78 init1: 54 opt: 74 Z-score: 92.2 bits: 26.1 E(): 6.2 Smith-Waterman score: 74; 40.000% identity (55.000% similar) in 40 aa overlap (136-174:230-263) 110 120 130 140 150 160 FLJ000 TALCSTIGLHDARGRVGKKVARSLVVGIHRLPLKGVLPGWRMLLEEKRERHETGTLQSCH :: . ::: ::: . . : . KIAA04 DEENSDQRDDMEHGWEVVDSNDSASQHQEELPPPPLPPGW----EEKVD--NLGRTYYVN 200 210 220 230 240 250 170 180 FLJ000 HGN-VTQWHRACSSLLFSFLFFF :.: .::::: KIAA04 HNNRTTQWHRPSLMDVSSESDNNIRQINQEAAHRRFRSRRHISEDLEPEPSEGGDVPEPW 260 270 280 290 300 310 >>KIAA1276 ( 1068 res) fh00139s1 (1068 aa) initn: 82 init1: 59 opt: 74 Z-score: 91.9 bits: 26.2 E(): 6.4 Smith-Waterman score: 76; 24.779% identity (53.982% similar) in 113 aa overlap (78-177:641-753) 50 60 70 80 90 100 FLJ000 YRAYHVYYITIRHKPKQLAAGLLNIATAEIFSGLEEEPLQMSTNFSNFLVYGMKS----- .: ::.: :: . .. ..::. KIAA12 AKLQAQVSQMQQALEQCTSNYREDLQALKQLSDLEREKLQHELQETTQQNHAMKAQLEAS 620 630 640 650 660 670 110 120 130 140 150 FLJ000 ----LKLTALCSTIGLHDARGRVGKKVARSLVVG--IHRLPLKGVLPGWRMLLEEKRERH :.. :. .. :. :. ..:: . ::: :... :. :.:.::: KIAA12 HQRALRMLEKARHQELKATEERLKKESSHSLQIQHQTHRLELQALEEKARQELQEERERM 680 690 700 710 720 730 160 170 180 FLJ000 ET--GTLQSCHHGNVTQWHRACSSLLFSFLFFF .. . : . .... . ::: KIAA12 QAQQALLLESLRQELSEQQAACSGHQKDLEALQAELRALGRQQASSQCPGDSKDHIIATE 740 750 760 770 780 790 187 residues in 1 query sequences 2210807 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:28:53 2009 done: Fri Feb 27 10:28:53 2009 Total Scan time: 0.360 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]