# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00033.fasta.huge -Q ../query/FLJ00033.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00033, 253 aa vs ./tmplib.10216 library 2210741 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.7109+/-0.00342; mu= 17.7122+/- 0.232 mean_var=63.8530+/-13.774, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40 Lambda= 0.160503 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00415 ( 426 res) sg00017 ( 426) 1576 373.2 1.2e-104 KIAA0559 ( 1212 res) hh01510 (1212) 94 30.6 0.46 KIAA1187 ( 813 res) fk03027 ( 813) 91 29.7 0.58 KIAA1924 ( 613 res) hh01339 ( 613) 84 27.9 1.5 KIAA0732 ( 1449 res) fg05988b (1449) 84 28.4 2.5 KIAA1916 ( 542 res) hg01117 ( 542) 79 26.7 3.1 KIAA1908 ( 445 res) ah02604 ( 445) 78 26.3 3.3 KIAA1393 ( 500 res) hj06562 ( 500) 77 26.2 4.1 KIAA1411 ( 1522 res) fh10052(revised) (1522) 79 27.3 5.8 KIAA0342 ( 2467 res) bf03307 (2467) 80 27.8 6.6 FLJ00330 ( 246 res) sj03258 ( 246) 71 24.4 7.1 KIAA0682 ( 973 res) hk02879 ( 973) 75 26.1 8.4 KIAA0945 ( 797 res) hj04760 ( 797) 73 25.5 10 KIAA1053 ( 508 res) hh05049 ( 508) 71 24.8 11 KIAA1965 ( 565 res) pj02601 ( 565) 71 24.9 12 KIAA0119 ( 325 res) ha01753 ( 325) 68 23.8 14 KIAA0660 ( 490 res) hk01902 ( 490) 69 24.3 15 KIAA0960 ( 1502 res) hj05779s1 (1502) 73 25.9 15 FLJ00028 ( 91 res) as00028 ( 91) 62 21.7 17 KIAA1243 ( 828 res) pf00817 ( 828) 70 24.8 17 KIAA0254 ( 1009 res) ha07011 (1009) 70 25.0 19 FLJ00040 ( 1060 res) as00040 (1060) 69 24.8 23 KIAA1286 ( 1214 res) hh11961(revised) (1214) 69 24.8 25 FLJ00168 ( 588 res) sh07625 ( 588) 66 23.7 26 KIAA0428 ( 373 res) hh01409 ( 373) 64 23.0 28 KIAA1197 ( 1487 res) fg01844 (1487) 69 25.0 28 KIAA0234 ( 1512 res) ha02764 (1512) 69 25.0 29 KIAA1737 ( 400 res) pj00125 ( 400) 64 23.0 29 KIAA0011 ( 924 res) ha00409 ( 924) 67 24.2 29 KIAA1414 ( 1586 res) fh14368(revised) (1586) 69 25.0 29 KIAA1250 ( 1777 res) pf01137 (1777) 69 25.1 31 KIAA0543 ( 1111 res) hg04390 (1111) 67 24.3 33 KIAA0816 ( 1950 res) af09475 (1950) 69 25.1 33 FLJ00159 ( 567 res) sh06608 ( 567) 64 23.2 35 KIAA1378 ( 628 res) fj04831s1 ( 628) 64 23.3 38 KIAA1636 ( 1864 res) ff02660 (1864) 68 24.9 38 KIAA0619 ( 1428 res) hg04117 (1428) 67 24.5 38 KIAA0550 ( 1524 res) hh15909 (1524) 67 24.5 39 FLJ00247 ( 925 res) sj08552 ( 925) 65 23.8 40 KIAA0150 ( 944 res) ha01348 ( 944) 65 23.8 41 KIAA1157 ( 428 res) hh05862 ( 428) 62 22.6 41 KIAA1100 ( 444 res) hk07907 ( 444) 62 22.6 42 FLJ00319 ( 456 res) sh07415 ( 456) 62 22.6 43 KIAA1631 ( 1032 res) fh15959s1 (1032) 65 23.8 43 KIAA0080 ( 486 res) hh13320 ( 486) 62 22.7 45 KIAA1546 ( 684 res) fh12289 ( 684) 63 23.1 46 KIAA0685 ( 939 res) hk02959 ( 939) 64 23.5 48 KIAA0837 ( 745 res) hj06536 ( 745) 63 23.2 49 KIAA0187 ( 1285 res) ha02920 (1285) 65 23.9 49 KIAA1898 ( 1013 res) fk06427 (1013) 64 23.6 50 >>FLJ00415 ( 426 res) sg00017 (426 aa) initn: 1573 init1: 1573 opt: 1576 Z-score: 1972.0 bits: 373.2 E(): 1.2e-104 Smith-Waterman score: 1576; 97.046% identity (98.312% similar) in 237 aa overlap (12-248:136-372) 10 20 30 40 FLJ000 WERAHLSPVRPQDLWIPYFAITTDITASAMRVHTDGSLWRY .::::::::::::::::::::::::::::: FLJ004 ALDLTYPITSMFSGAGFNSSIFSVFKDQQIEDLWIPYFAITTDITASAMRVHTDGSLWRY 110 120 130 140 150 160 50 60 70 80 90 100 FLJ000 VRASMSLSGYMPPLCDPKDGHLLMDGGYINNLPADVARSMGAKVVIAIDVGSRDETDLTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ004 VRASMSLSGYMPPLCDPKDGHLLMDGGYINNLPADVARSMGAKVVIAIDVGSRDETDLTN 170 180 190 200 210 220 110 120 130 140 150 160 FLJ000 YGDALSGWWLLWKRWNPLATKVKVLNMAEIQTRLAYVCCVRQLEVVKSSDYCEYLRPPID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ004 YGDALSGWWLLWKRWNPLATKVKVLNMAEIQTRLAYVCCVRQLEVVKSSDYCEYLRPPID 230 240 250 260 270 280 170 180 190 200 210 220 FLJ000 SYSTLDFGKFNEICEVGYQHGRTVFDIWGRSGVLEKMLRDQQGPSKKPASAVLTCPNASF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ004 SYSTLDFGKFNEICEVGYQHGRTVFDIWGRSGVLEKMLRDQQGPSKKPASAVLTCPNASF 290 300 310 320 330 340 230 240 250 FLJ000 TDLAEIVSRIEPAKPAMVDGEWRRKTKPWRRA ::::::::::::::::::: : .:. FLJ004 TDLAEIVSRIEPAKPAMVDDESDYQTEYEEELLDVPRDAYADFQSTSAQQGSDLEDESSL 350 360 370 380 390 400 >>KIAA0559 ( 1212 res) hh01510 (1212 aa) initn: 71 init1: 43 opt: 94 Z-score: 112.5 bits: 30.6 E(): 0.46 Smith-Waterman score: 94; 24.828% identity (58.621% similar) in 145 aa overlap (81-213:807-939) 60 70 80 90 100 110 FLJ000 YMPPLCDPKDGHLLMDGGYINNLPADVARSMGAKVVIAIDVGSRDETDLTNYGDALSGWW .:: .. . :: ..: : . : KIAA05 TRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQT-----GKLMEGMQ 780 790 800 810 820 830 120 130 140 150 160 FLJ000 LLWKRWN--PLATKV--KVLNMAEIQTRLAYVCCVRQLEVVKSSDYCEYLR---PP--ID .: .:: ::..:. .: .. :. : .: .:.....:. ..:. :: .: KIAA05 VL--EWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNMLSDSENSQHLELHEPPKAVD 840 850 860 870 880 170 180 190 200 210 FLJ000 SYST--LDFGKFN-EICEVGYQHGRTVFDIWGRSGVLEKMLRDQQGPSKKPASAVLTCPN . .. .: .. :. .:. :.. :. :.:.:: . ..::.. .:.: KIAA05 KAKSPGVDPKQLAAELQKVSLQQSPLVL-----SSVVEKGSHVHSGPTSAGSSSVPSPGQ 890 900 910 920 930 940 220 230 240 250 FLJ000 ASFTDLAEIVSRIEPAKPAMVDGEWRRKTKPWRRA KIAA05 PGSPSVSKKKHGSSKPTDGTKVVSHPITGEIQLQINYDLGNLIIHILQARNLVPRDNNGY 950 960 970 980 990 1000 >>KIAA1187 ( 813 res) fk03027 (813 aa) initn: 69 init1: 44 opt: 91 Z-score: 110.6 bits: 29.7 E(): 0.58 Smith-Waterman score: 91; 37.705% identity (60.656% similar) in 61 aa overlap (189-246:309-366) 160 170 180 190 200 210 FLJ000 PIDSYSTLDFGKFNEICEVGYQHGRTVFDIWGRSGVLEKMLRDQQGPSKKPASAVLTCP- :::.:. .. : : .:..:: .:: KIAA11 SFLARSRSAVTLPRNGRDQGRGCDPGRGPTWGRAGA--SLARGPQPDRTHPSAAVPVCPR 280 290 300 310 320 330 220 230 240 250 FLJ000 NASFTDLAEI-VSR-IEPAKPAMVDGEWRRKTKPWRRA .:: . :. :.: .. :: :: ::: KIAA11 SASASPLTPCSVTRSVHRCAPAGERGE-RRKPNAGGSPAPVRRRPEASPVQKKEKKDKER 340 350 360 370 380 390 KIAA11 ENEKEKSALARERSLKKRQSLPASPRARLSASTASELSPKSKARPSSPSTSWHRPASPCP 400 410 420 430 440 450 >>KIAA1924 ( 613 res) hh01339 (613 aa) initn: 59 init1: 59 opt: 84 Z-score: 103.1 bits: 27.9 E(): 1.5 Smith-Waterman score: 87; 24.468% identity (44.681% similar) in 188 aa overlap (15-194:438-610) 10 20 30 40 FLJ000 WERAHLSPVRPQDLWIPYFAITTDITASAMRVHTDGSLWRYVRA : : .:.. .: : : : KIAA19 APRPFPEVSLSQERSDASNADGPGFHSLEPWAQLEASDIHTAAAGTHVLTHESAEVPVAR 410 420 430 440 450 460 50 60 70 80 90 FLJ000 SMSLSGYMP-PLCDPKD-----GHLLMDGGYINNLPADVARSMGAKVVIAIDVGSRDETD . : :..: :. : :: .. . . : : .. ::. .:.: .. KIAA19 TGSCEGFLPDPVLRLKGVIGFGGHGTRQALWTPDGAAVVYPCHAVIVVLLVDTG--EQRF 470 480 490 500 510 520 100 110 120 130 140 150 FLJ000 LTNYGDALSGWWLLWKRWNPLATKVKVLNMAEIQTRLAYVCCVRQLEVVKSSDYCEYLRP . .. : .:. :: . .: :.: : .: . . : . : KIAA19 FLGHTDKVSA----------LALDGSSSLLASAQARAPSV--MRLWDFQTGRCLCLF-RS 530 540 550 560 570 160 170 180 190 200 210 FLJ000 PIDSYSTLDFGKFNEI-CEVGY-QHGRTVFDIWGRSGVLEKMLRDQQGPSKKPASAVLTC :. .:.:. . . : :: .::::: : : :: KIAA19 PMHVVCSLSFSDSGALLCGVGKDHHGRTVTGPWLRVGVGLS 580 590 600 610 220 230 240 250 FLJ000 PNASFTDLAEIVSRIEPAKPAMVDGEWRRKTKPWRRA >>KIAA0732 ( 1449 res) fg05988b (1449 aa) initn: 43 init1: 43 opt: 84 Z-score: 99.2 bits: 28.4 E(): 2.5 Smith-Waterman score: 84; 39.024% identity (65.854% similar) in 41 aa overlap (189-229:476-514) 160 170 180 190 200 210 FLJ000 PIDSYSTLDFGKFNEICEVGYQHGRTVFDIWGRSGVLEKMLRDQQGPSKKPASAVLTCPN :::.:. .. : : ..:..::: . : :. KIAA07 TLSVNSAGSPESAPLGPRLLFGSGSKGSRSWGRGGTTRR-LWDPNNPDQKPALKTQT-PQ 450 460 470 480 490 500 220 230 240 250 FLJ000 ASFTDLAEIVSRIEPAKPAMVDGEWRRKTKPWRRA : : . :: KIAA07 LHFLDTDDEVSPTSWGDSRQAQASYYKFQNSDNPYYYPRTPGPASQYPYTGYNPLQYPVG 510 520 530 540 550 560 >>KIAA1916 ( 542 res) hg01117 (542 aa) initn: 45 init1: 45 opt: 79 Z-score: 97.5 bits: 26.7 E(): 3.1 Smith-Waterman score: 79; 23.478% identity (50.435% similar) in 115 aa overlap (62-174:134-239) 40 50 60 70 80 90 FLJ000 VHTDGSLWRYVRASMSLSGYMPPLCDPKDGHLLMDGGYINNLPADVARSMGAKVVIAIDV :: . ...:. :: :: .. . .: .:. KIAA19 GLFHLEYLFIEGNKIETISRNAFRGLRDLTHLSLANNHIKALPRDVFSDLDS--LIELDL 110 120 130 140 150 160 100 110 120 130 140 FLJ000 -GSRDETDLTNYGDALSGWWLLW-KRWNPLATKVKVLNMAEIQTRLAYVCCVRQLEVVKS :.. : : . : :: : : .. : .. : : . . : . . KIAA19 RGNKFECDCK------AKWLYLWLKMTNSTVSDVLCIGPPEYQEKKLNDVTSFDYECT-T 170 180 190 200 210 150 160 170 180 190 200 FLJ000 SDYCEYLRPPIDSYSTLDFGKFNEICEVGYQHGRTVFDIWGRSGVLEKMLRDQQGPSKKP .:. . : .: :. :.. :.. KIAA19 TDFVVHQTLPYQSVSVDTFNSKNDVYVAIAQPSMENCMVLEWDHIEMNFRSYDNITGQSI 220 230 240 250 260 270 >>KIAA1908 ( 445 res) ah02604 (445 aa) initn: 62 init1: 62 opt: 78 Z-score: 97.1 bits: 26.3 E(): 3.3 Smith-Waterman score: 78; 26.389% identity (50.000% similar) in 72 aa overlap (179-249:346-415) 150 160 170 180 190 200 FLJ000 SSDYCEYLRPPIDSYSTLDFGKFNEICEVGYQHGRTVFDIWGRSGVLEKMLRDQQ-GPSK : : . . ::: . .: :. . KIAA19 PSGAGQGRTARKGPAREEIPSSDSSAKPSVYPHPHLTATRWGRHHCPFSKVRKQRLREVQ 320 330 340 350 360 370 210 220 230 240 250 FLJ000 KPASAVLTCPNASFTDLAEIVSRIEPAKPAMVDGEWRRKTKPWRRA . .: : .: . :. : ::. ::... : ..:: KIAA19 QLLPQLLRCRTA-VPGVPEL-SLPEPSAPALLSEPWPSQSKPGSGCSEALGLVNPSCLGP 380 390 400 410 420 430 KIAA19 GPPPGGDPEGCS 440 >>KIAA1393 ( 500 res) hj06562 (500 aa) initn: 43 init1: 43 opt: 77 Z-score: 95.3 bits: 26.2 E(): 4.1 Smith-Waterman score: 77; 35.088% identity (64.912% similar) in 57 aa overlap (74-128:289-345) 50 60 70 80 90 100 FLJ000 ASMSLSGYMPPLCDPKDGHLLMDGGYINNLPADVARSMGAKV-VIAIDVGSRDETDLTNY :.:: .. : : .:: :.... : ..: KIAA13 NNYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFAND 260 270 280 290 300 310 110 120 130 140 150 160 FLJ000 GDALSGWWLLWK-RWNPLATKVKVLNMAEIQTRLAYVCCVRQLEVVKSSDYCEYLRPPID . : :::.. . : . ::::.:. KIAA13 LNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGLSKERKPSVHVVMN 320 330 340 350 360 370 >>KIAA1411 ( 1522 res) fh10052(revised) (1522 aa) initn: 48 init1: 48 opt: 79 Z-score: 92.7 bits: 27.3 E(): 5.8 Smith-Waterman score: 79; 23.077% identity (55.128% similar) in 78 aa overlap (12-89:1431-1502) 10 20 30 40 FLJ000 WERAHLSPVRPQDLWIPYFAITTDITASAMRVHTDGSLWRY :: ..:: . .. .:.. . .:... KIAA14 HSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIY-- 1410 1420 1430 1440 1450 50 60 70 80 90 100 FLJ000 VRASMSLSGYMPPLCDPKDGHLLMDGGYINNLPADVARSMGAKVVIAIDVGSRDETDLTN : . . . :. . :: .:. . :: :: . .: . ::. KIAA14 ---SEMIHNLLRPVLQSKDCNLVRYN-VINALPNTADSLIGRAAHIAVLDSEIFLEKFFL 1460 1470 1480 1490 1500 1510 110 120 130 140 150 160 FLJ000 YGDALSGWWLLWKRWNPLATKVKVLNMAEIQTRLAYVCCVRQLEVVKSSDYCEYLRPPID KIAA14 VAALKYFQ 1520 >>KIAA0342 ( 2467 res) bf03307 (2467 aa) initn: 45 init1: 45 opt: 80 Z-score: 91.7 bits: 27.8 E(): 6.6 Smith-Waterman score: 80; 24.138% identity (51.724% similar) in 87 aa overlap (84-167:2115-2199) 60 70 80 90 100 110 FLJ000 PLCDPKDGHLLMDGGYINNLPADVARSMGAKVVIAIDVGSRDET--DLTNYGDALSGWWL .:..:..: : :. :: : KIAA03 RHFREIESRLQLMSMDCPGQVPERLLKVVKRVLVAVNVKSVAEALQDLLFERDEEYLMDC 2090 2100 2110 2120 2130 2140 120 130 140 150 160 170 FLJ000 LWKRWNPLATKVKVL-NMAEIQTRLAYVCCVRQLEVVKSSDYCEYLRPPIDSYSTLDFGK : ::.:. :: ... .. ..:: . :. .. . ::. . .: . : KIAA03 DW-RWDPVHTKGSIVRGLYYEEVRLNRLLCLDPVDYFAEPE-CEFGQDEMDELALEDRDH 2150 2160 2170 2180 2190 2200 180 190 200 210 220 230 FLJ000 FNEICEVGYQHGRTVFDIWGRSGVLEKMLRDQQGPSKKPASAVLTCPNASFTDLAEIVSR KIAA03 VLATILSQKQRKASIQRKLRRACLVVSLCISWRRRVGTQMERVREEAREPRAGNFKKADV 2210 2220 2230 2240 2250 2260 253 residues in 1 query sequences 2210741 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:28:50 2009 done: Fri Feb 27 10:28:51 2009 Total Scan time: 0.410 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]