hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna/full/aisin/as00032/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: as00032 705 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 434.6 5.2e-126 20 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ZnF_C2H2 1/20 144 166 .. 1 23 [] 29.6 0.00044 ZnF_C2H2 2/20 172 194 .. 1 23 [] 28.6 0.00088 ZnF_C2H2 3/20 200 222 .. 1 23 [] 26.1 0.005 ZnF_C2H2 4/20 228 250 .. 1 23 [] 27.8 0.0015 ZnF_C2H2 5/20 256 278 .. 1 23 [] 25.8 0.0059 ZnF_C2H2 6/20 284 306 .. 1 23 [] 27.0 0.0025 ZnF_C2H2 7/20 312 334 .. 1 23 [] 26.7 0.0033 ZnF_C2H2 8/20 340 362 .. 1 23 [] 26.0 0.0052 ZnF_C2H2 9/20 368 390 .. 1 23 [] 28.0 0.0013 ZnF_C2H2 10/20 396 418 .. 1 23 [] 28.2 0.0011 ZnF_C2H2 11/20 424 446 .. 1 23 [] 27.9 0.0014 ZnF_C2H2 12/20 452 474 .. 1 23 [] 29.9 0.00034 ZnF_C2H2 13/20 480 502 .. 1 23 [] 26.7 0.0032 ZnF_C2H2 14/20 508 530 .. 1 23 [] 26.1 0.005 ZnF_C2H2 15/20 536 558 .. 1 23 [] 25.5 0.0074 ZnF_C2H2 16/20 564 586 .. 1 23 [] 30.0 0.00033 ZnF_C2H2 17/20 592 614 .. 1 23 [] 28.0 0.0013 ZnF_C2H2 18/20 620 642 .. 1 23 [] 29.7 0.00041 ZnF_C2H2 19/20 648 670 .. 1 23 [] 30.5 0.00023 ZnF_C2H2 20/20 676 698 .. 1 23 [] 28.8 0.00076 Alignments of top-scoring domains: ZnF_C2H2: domain 1 of 20, from 144 to 166: score 29.6, E = 0.00044 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ ++L+ H r+H as00032 144 YKCNE-CGKAFTQNsNLTSHRRIH 166 ZnF_C2H2: domain 2 of 20, from 172 to 194: score 28.6, E = 0.00088 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f+ +++L+ H+ +H as00032 172 YKCSE-CGKTFTVRsNLTIHQVIH 194 ZnF_C2H2: domain 3 of 20, from 200 to 222: score 26.1, E = 0.005 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f++ + L H r+H as00032 200 YKCHE-CGKVFRHNsYLATHRRIH 222 ZnF_C2H2: domain 4 of 20, from 228 to 250: score 27.8, E = 0.0015 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f+ +++L+ H+ +H as00032 228 YKCNE-CGKAFRGHsNLTTHQLIH 250 ZnF_C2H2: domain 5 of 20, from 256 to 278: score 25.8, E = 0.0059 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk f++ ++L+ H r+H as00032 256 FKCNE-CGKLFTQNsHLISHWRIH 278 ZnF_C2H2: domain 6 of 20, from 284 to 306: score 27.0, E = 0.0025 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs +++L H+ +H as00032 284 YKCNE-CGKAFSVRsSLAIHQTIH 306 ZnF_C2H2: domain 7 of 20, from 312 to 334: score 26.7, E = 0.0033 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f+ + L rH rvH as00032 312 YKCNE-CGKVFRYNsYLGRHRRVH 334 ZnF_C2H2: domain 8 of 20, from 340 to 362: score 26.0, E = 0.0052 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs +++L H+ +H as00032 340 YKCNE-CGKAFSMHsNLATHQVIH 362 ZnF_C2H2: domain 9 of 20, from 368 to 390: score 28.0, E = 0.0013 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C+k+f++ ++L +H r+H as00032 368 FKCNE-CSKVFTQNsQLANHRRIH 390 ZnF_C2H2: domain 10 of 20, from 396 to 418: score 28.2, E = 0.0011 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs +++L+ H+ +H as00032 396 YKCNE-CGKAFSVRsSLTTHQAIH 418 [output cut off at A = 10 top alignments] //