hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna/full/aisin/as00032/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: as00032 705 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 573.1 1.8e-168 20 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- zf-C2H2 1/20 144 166 .. 1 24 [] 39.4 8e-08 zf-C2H2 2/20 172 194 .. 1 24 [] 36.7 5.3e-07 zf-C2H2 3/20 200 222 .. 1 24 [] 34.1 3.3e-06 zf-C2H2 4/20 228 250 .. 1 24 [] 34.5 2.5e-06 zf-C2H2 5/20 256 278 .. 1 24 [] 35.1 1.6e-06 zf-C2H2 6/20 284 306 .. 1 24 [] 34.2 3e-06 zf-C2H2 7/20 312 334 .. 1 24 [] 33.2 5.9e-06 zf-C2H2 8/20 340 362 .. 1 24 [] 33.4 5.1e-06 zf-C2H2 9/20 368 390 .. 1 24 [] 34.3 2.8e-06 zf-C2H2 10/20 396 418 .. 1 24 [] 36.0 8.8e-07 zf-C2H2 11/20 424 446 .. 1 24 [] 28.0 0.00022 zf-C2H2 12/20 452 474 .. 1 24 [] 37.0 4.2e-07 zf-C2H2 13/20 480 502 .. 1 24 [] 34.0 3.5e-06 zf-C2H2 14/20 508 530 .. 1 24 [] 34.1 3.3e-06 zf-C2H2 15/20 536 558 .. 1 24 [] 32.2 1.2e-05 zf-C2H2 16/20 564 586 .. 1 24 [] 39.0 1.1e-07 zf-C2H2 17/20 592 614 .. 1 24 [] 35.8 1e-06 zf-C2H2 18/20 620 642 .. 1 24 [] 36.8 5.1e-07 zf-C2H2 19/20 648 670 .. 1 24 [] 36.1 7.8e-07 zf-C2H2 20/20 676 698 .. 1 24 [] 36.3 6.9e-07 Alignments of top-scoring domains: zf-C2H2: domain 1 of 20, from 144 to 166: score 39.4, E = 8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++snL++H+r+H as00032 144 YKCN-ECGKAFTQNSNLTSHRRIH 166 zf-C2H2: domain 2 of 20, from 172 to 194: score 36.7, E = 5.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +snL+ H+ +H as00032 172 YKCS-ECGKTFTVRSNLTIHQVIH 194 zf-C2H2: domain 3 of 20, from 200 to 222: score 34.1, E = 3.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s L +H+r+H as00032 200 YKCH-ECGKVFRHNSYLATHRRIH 222 zf-C2H2: domain 4 of 20, from 228 to 250: score 34.5, E = 2.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +snL++H+ +H as00032 228 YKCN-ECGKAFRGHSNLTTHQLIH 250 zf-C2H2: domain 5 of 20, from 256 to 278: score 35.1, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F+++s+L +H+r+H as00032 256 FKCN-ECGKLFTQNSHLISHWRIH 278 zf-C2H2: domain 6 of 20, from 284 to 306: score 34.2, E = 3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +s+L H+ +H as00032 284 YKCN-ECGKAFSVRSSLAIHQTIH 306 zf-C2H2: domain 7 of 20, from 312 to 334: score 33.2, E = 5.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +s L rH+r+H as00032 312 YKCN-ECGKVFRYNSYLGRHRRVH 334 zf-C2H2: domain 8 of 20, from 340 to 362: score 33.4, E = 5.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +snL +H+ +H as00032 340 YKCN-ECGKAFSMHSNLATHQVIH 362 zf-C2H2: domain 9 of 20, from 368 to 390: score 34.3, E = 2.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C k+F+++s+L +H+r+H as00032 368 FKCN-ECSKVFTQNSQLANHRRIH 390 zf-C2H2: domain 10 of 20, from 396 to 418: score 36.0, E = 8.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +s+L++H+ +H as00032 396 YKCN-ECGKAFSVRSSLTTHQAIH 418 zf-C2H2: domain 11 of 20, from 424 to 446: score 28.0, E = 0.00022 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +CgksF++ks+L++H+ +H as00032 424 YKCI-ECGKSFTQKSHLRSHRGIH 446 zf-C2H2: domain 12 of 20, from 452 to 474: score 37.0, E = 4.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F + s+L rH+r+H as00032 452 YKCN-ECGKVFAQTSQLARHWRVH 474 zf-C2H2: domain 13 of 20, from 480 to 502: score 34.0, E = 3.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCg++Fs++s+L+ H+ +H as00032 480 YKCN-DCGRAFSDRSSLTFHQAIH 502 zf-C2H2: domain 14 of 20, from 508 to 530: score 34.1, E = 3.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s L +H+r+H as00032 508 YKCH-ECGKVFRHNSYLATHRRIH 530 zf-C2H2: domain 15 of 20, from 536 to 558: score 32.2, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +snL++H+ +H as00032 536 YKCN-ECGKAFSMHSNLTTHKVIH 558 zf-C2H2: domain 16 of 20, from 564 to 586: score 39.0, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L +H+rtH as00032 564 YKCN-QCGKVFTQNSHLANHQRTH 586 zf-C2H2: domain 17 of 20, from 592 to 614: score 35.8, E = 1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs +s+L++H+ +H as00032 592 YRCN-ECGKAFSVRSSLTTHQAIH 614 zf-C2H2: domain 18 of 20, from 620 to 642: score 36.8, E = 5.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++++L +H+r+H as00032 620 YKCN-ECGKVFTQNAHLANHRRIH 642 zf-C2H2: domain 19 of 20, from 648 to 670: score 36.1, E = 7.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +s+L++H+ +H as00032 648 YRCT-ECGKAFRVRSSLTTHMAIH 670 zf-C2H2: domain 20 of 20, from 676 to 698: score 36.3, E = 6.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++snL +H r+H as00032 676 YKCN-ECGKVFRQSSNLASHHRMH 698 //