# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00024.fasta.nr -Q ../query/FLJ00024.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00024, 195 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827333 sequences Expectation_n fit: rho(ln(x))= 5.1381+/-0.000181; mu= 7.8229+/- 0.010 mean_var=67.1121+/-13.095, 0's: 34 Z-trim: 34 B-trim: 36 in 1/67 Lambda= 0.156557 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|10440377|dbj|BAB15724.1| FLJ00024 protein [Homo ( 195) 1329 308.3 4.5e-82 gi|34192140|gb|AAH29924.2| FAM78A protein [Homo sa ( 201) 1205 280.3 1.3e-73 gi|114627266|ref|XP_520325.2| PREDICTED: similar t ( 234) 1205 280.4 1.4e-73 gi|57208871|emb|CAI41114.1| family with sequence s ( 252) 1205 280.4 1.5e-73 gi|57208870|emb|CAI41113.1| family with sequence s ( 280) 1205 280.4 1.6e-73 gi|29436374|gb|AAH49388.1| FAM78A protein [Homo sa ( 263) 1198 278.8 4.6e-73 gi|109109996|ref|XP_001106043.1| PREDICTED: hypoth ( 263) 1198 278.8 4.6e-73 gi|74742326|sp|Q5JUQ0.1|FA78A_HUMAN RecName: Full= ( 283) 1198 278.9 4.9e-73 gi|81898890|sp|Q8C552.1|FA78A_MOUSE RecName: Full= ( 283) 1193 277.7 1.1e-72 gi|73967916|ref|XP_537812.2| PREDICTED: hypothetic ( 443) 1193 277.8 1.5e-72 gi|148744164|gb|AAI42012.1| C9ORF59 protein [Bos t ( 283) 1162 270.7 1.4e-70 gi|61554401|gb|AAX46551.1| chromosome 9 open readi ( 337) 1139 265.6 5.8e-69 gi|126297901|ref|XP_001370117.1| PREDICTED: hypoth ( 283) 1137 265.1 6.9e-69 gi|149737988|ref|XP_001499058.1| PREDICTED: hypoth ( 283) 1126 262.6 3.9e-68 gi|149410306|ref|XP_001506877.1| PREDICTED: hypoth ( 370) 1126 262.7 4.8e-68 gi|118099350|ref|XP_001233857.1| PREDICTED: hypoth ( 263) 1064 248.6 6e-64 gi|171846333|gb|AAI61564.1| LOC100145734 protein [ ( 263) 979 229.4 3.6e-58 gi|47210293|emb|CAF95189.1| unnamed protein produc ( 182) 957 224.3 8.4e-57 gi|160773292|gb|AAI55339.1| Zgc:175187 protein [Da ( 262) 930 218.3 7.7e-55 gi|194210463|ref|XP_001492928.2| PREDICTED: simila ( 207) 915 214.8 6.7e-54 gi|149058132|gb|EDM09289.1| rCG46213 [Rattus norve ( 205) 895 210.3 1.5e-52 gi|26338922|dbj|BAC33132.1| unnamed protein produc ( 205) 895 210.3 1.5e-52 gi|118094047|ref|XP_001232254.1| PREDICTED: hypoth ( 261) 896 210.6 1.6e-52 gi|126306188|ref|XP_001363856.1| PREDICTED: simila ( 261) 896 210.6 1.6e-52 gi|148707242|gb|EDL39189.1| RIKEN cDNA C030014K22 ( 256) 895 210.4 1.8e-52 gi|74746881|sp|Q5VT40.1|FA78B_HUMAN RecName: Full= ( 261) 895 210.4 1.8e-52 gi|109498984|ref|XP_001075923.1| PREDICTED: hypoth ( 426) 895 210.5 2.7e-52 gi|47213914|emb|CAF95856.1| unnamed protein produc ( 262) 868 204.3 1.3e-50 gi|125805393|ref|XP_001338241.1| PREDICTED: simila ( 261) 863 203.2 2.8e-50 gi|119608370|gb|EAW87964.1| family with sequence s ( 126) 858 201.8 3.4e-50 gi|169145621|emb|CAQ14615.1| novel protein similar ( 261) 844 198.9 5.4e-49 gi|149609069|ref|XP_001518531.1| PREDICTED: hypoth ( 739) 833 196.7 7e-48 gi|116284164|gb|AAI24339.1| Zgc:153381 [Danio reri ( 262) 822 193.9 1.7e-47 gi|47227940|emb|CAF97569.1| unnamed protein produc ( 261) 820 193.5 2.3e-47 gi|198422819|ref|XP_002129747.1| PREDICTED: hypoth ( 968) 723 171.9 2.6e-40 gi|210101642|gb|EEA49704.1| hypothetical protein B ( 266) 695 165.2 7.4e-39 gi|115768243|ref|XP_797512.2| PREDICTED: similar t ( 265) 670 159.6 3.7e-37 gi|26329505|dbj|BAC28491.1| unnamed protein produc ( 124) 623 148.7 3.2e-34 gi|210089512|gb|EEA37816.1| hypothetical protein B ( 204) 451 110.0 2.3e-22 gi|190586279|gb|EDV26332.1| hypothetical protein T ( 215) 203 54.0 1.8e-05 >>gi|10440377|dbj|BAB15724.1| FLJ00024 protein [Homo sap (195 aa) initn: 1329 init1: 1329 opt: 1329 Z-score: 1629.7 bits: 308.3 E(): 4.5e-82 Smith-Waterman score: 1329; 100.000% identity (100.000% similar) in 195 aa overlap (1-195:1-195) 10 20 30 40 50 60 FLJ000 LGLQPVLEHPSFLRLKNIPLSSWELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 LGLQPVLEHPSFLRLKNIPLSSWELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPT 10 20 30 40 50 60 70 80 90 100 110 120 FLJ000 KRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 KRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQT 70 80 90 100 110 120 130 140 150 160 170 180 FLJ000 LHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 LHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWR 130 140 150 160 170 180 190 FLJ000 PKYGQPLVVIPPKHR ::::::::::::::: gi|104 PKYGQPLVVIPPKHR 190 >>gi|34192140|gb|AAH29924.2| FAM78A protein [Homo sapien (201 aa) initn: 1195 init1: 1195 opt: 1205 Z-score: 1478.1 bits: 280.3 E(): 1.3e-73 Smith-Waterman score: 1205; 90.640% identity (92.611% similar) in 203 aa overlap (1-195:1-201) 10 20 30 40 50 FLJ000 LG-LQPVLEHPSFLRLKNIPL-------SSWELPDLQEGKIQAISDSDGVNYPWYGNTTE :: :::. : : :.. . : :::::::::::::::::::::::::::::::: gi|341 LGSLQPL--PPRFKRFSCLSLPSSWDYRSSWELPDLQEGKIQAISDSDGVNYPWYGNTTE 10 20 30 40 50 60 70 80 90 100 110 FLJ000 TCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATNTST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|341 TCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATNTST 60 70 80 90 100 110 120 130 140 150 160 170 FLJ000 NDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|341 NDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNAN 120 130 140 150 160 170 180 190 FLJ000 DAQVLMWRPKYGQPLVVIPPKHR ::::::::::::::::::::::: gi|341 DAQVLMWRPKYGQPLVVIPPKHR 180 190 200 >>gi|114627266|ref|XP_520325.2| PREDICTED: similar to RP (234 aa) initn: 1195 init1: 1195 opt: 1205 Z-score: 1477.1 bits: 280.4 E(): 1.4e-73 Smith-Waterman score: 1205; 90.640% identity (92.611% similar) in 203 aa overlap (1-195:34-234) 10 20 FLJ000 LG-LQPVLEHPSFLRLKNIPL-------SS :: :::. : : :.. . : :: gi|114 GSPEASTDCCWLHQATGSGSVTQAGVQWCDLGSLQPL--PPRFKRFSCLSLPSSWDYRSS 10 20 30 40 50 60 30 40 50 60 70 80 FLJ000 WELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 WELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAV 70 80 90 100 110 120 90 100 110 120 130 140 FLJ000 PVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRAR 130 140 150 160 170 180 150 160 170 180 190 FLJ000 LREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR 190 200 210 220 230 >>gi|57208871|emb|CAI41114.1| family with sequence simil (252 aa) initn: 1195 init1: 1195 opt: 1205 Z-score: 1476.7 bits: 280.4 E(): 1.5e-73 Smith-Waterman score: 1205; 90.640% identity (92.611% similar) in 203 aa overlap (1-195:52-252) 10 20 FLJ000 LG-LQPVLEHPSFLRLKNIPL-------SS :: :::. : : :.. . : :: gi|572 RSPEASTDCCWLHQATGSGSVTQAGVQWYDLGSLQPL--PPRFKRFSCLSLPSSWDYRSS 30 40 50 60 70 30 40 50 60 70 80 FLJ000 WELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 WELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAV 80 90 100 110 120 130 90 100 110 120 130 140 FLJ000 PVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 PVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRAR 140 150 160 170 180 190 150 160 170 180 190 FLJ000 LREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 LREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR 200 210 220 230 240 250 >>gi|57208870|emb|CAI41113.1| family with sequence simil (280 aa) initn: 1195 init1: 1195 opt: 1205 Z-score: 1476.0 bits: 280.4 E(): 1.6e-73 Smith-Waterman score: 1205; 90.640% identity (92.611% similar) in 203 aa overlap (1-195:80-280) 10 20 FLJ000 LG-LQPVLEHPSFLRLKNIPL-------SS :: :::. : : :.. . : :: gi|572 GSPEASTDCCWLHQATGSGSVTQAGVQWYDLGSLQPL--PPRFKRFSCLSLPSSWDYRSS 50 60 70 80 90 100 30 40 50 60 70 80 FLJ000 WELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 WELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAV 110 120 130 140 150 160 90 100 110 120 130 140 FLJ000 PVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 PVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRAR 170 180 190 200 210 220 150 160 170 180 190 FLJ000 LREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 LREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR 230 240 250 260 270 280 >>gi|29436374|gb|AAH49388.1| FAM78A protein [Homo sapien (263 aa) initn: 1198 init1: 1198 opt: 1198 Z-score: 1467.9 bits: 278.8 E(): 4.6e-73 Smith-Waterman score: 1198; 99.432% identity (100.000% similar) in 176 aa overlap (20-195:88-263) 10 20 30 40 FLJ000 LGLQPVLEHPSFLRLKNIPLSSWELPDLQEGKIQAISDSDGVNYPWYGN .::::::::::::::::::::::::::::: gi|294 PPIPKKETWVVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIQAISDSDGVNYPWYGN 60 70 80 90 100 110 50 60 70 80 90 100 FLJ000 TTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 TTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN 120 130 140 150 160 170 110 120 130 140 150 160 FLJ000 TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKP 180 190 200 210 220 230 170 180 190 FLJ000 NANDAQVLMWRPKYGQPLVVIPPKHR :::::::::::::::::::::::::: gi|294 NANDAQVLMWRPKYGQPLVVIPPKHR 240 250 260 >>gi|109109996|ref|XP_001106043.1| PREDICTED: hypothetic (263 aa) initn: 1198 init1: 1198 opt: 1198 Z-score: 1467.9 bits: 278.8 E(): 4.6e-73 Smith-Waterman score: 1198; 99.432% identity (100.000% similar) in 176 aa overlap (20-195:88-263) 10 20 30 40 FLJ000 LGLQPVLEHPSFLRLKNIPLSSWELPDLQEGKIQAISDSDGVNYPWYGN .::::::::::::::::::::::::::::: gi|109 PPIPKKETWIVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIQAISDSDGVNYPWYGN 60 70 80 90 100 110 50 60 70 80 90 100 FLJ000 TTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN 120 130 140 150 160 170 110 120 130 140 150 160 FLJ000 TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKP 180 190 200 210 220 230 170 180 190 FLJ000 NANDAQVLMWRPKYGQPLVVIPPKHR :::::::::::::::::::::::::: gi|109 NANDAQVLMWRPKYGQPLVVIPPKHR 240 250 260 >>gi|74742326|sp|Q5JUQ0.1|FA78A_HUMAN RecName: Full=Prot (283 aa) initn: 1198 init1: 1198 opt: 1198 Z-score: 1467.4 bits: 278.9 E(): 4.9e-73 Smith-Waterman score: 1198; 99.432% identity (100.000% similar) in 176 aa overlap (20-195:108-283) 10 20 30 40 FLJ000 LGLQPVLEHPSFLRLKNIPLSSWELPDLQEGKIQAISDSDGVNYPWYGN .::::::::::::::::::::::::::::: gi|747 PPIPKKETWVVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIQAISDSDGVNYPWYGN 80 90 100 110 120 130 50 60 70 80 90 100 FLJ000 TTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 TTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN 140 150 160 170 180 190 110 120 130 140 150 160 FLJ000 TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKP 200 210 220 230 240 250 170 180 190 FLJ000 NANDAQVLMWRPKYGQPLVVIPPKHR :::::::::::::::::::::::::: gi|747 NANDAQVLMWRPKYGQPLVVIPPKHR 260 270 280 >>gi|81898890|sp|Q8C552.1|FA78A_MOUSE RecName: Full=Prot (283 aa) initn: 1193 init1: 1193 opt: 1193 Z-score: 1461.3 bits: 277.7 E(): 1.1e-72 Smith-Waterman score: 1193; 98.864% identity (100.000% similar) in 176 aa overlap (20-195:108-283) 10 20 30 40 FLJ000 LGLQPVLEHPSFLRLKNIPLSSWELPDLQEGKIQAISDSDGVNYPWYGN .:::::::::::::.::::::::::::::: gi|818 PPIPKKETWIVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIEAISDSDGVNYPWYGN 80 90 100 110 120 130 50 60 70 80 90 100 FLJ000 TTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 TTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN 140 150 160 170 180 190 110 120 130 140 150 160 FLJ000 TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKP 200 210 220 230 240 250 170 180 190 FLJ000 NANDAQVLMWRPKYGQPLVVIPPKHR :::::::::::::::::::::::::: gi|818 NANDAQVLMWRPKYGQPLVVIPPKHR 260 270 280 >>gi|73967916|ref|XP_537812.2| PREDICTED: hypothetical p (443 aa) initn: 1193 init1: 1193 opt: 1193 Z-score: 1458.5 bits: 277.8 E(): 1.5e-72 Smith-Waterman score: 1193; 98.864% identity (100.000% similar) in 176 aa overlap (20-195:268-443) 10 20 30 40 FLJ000 LGLQPVLEHPSFLRLKNIPLSSWELPDLQEGKIQAISDSDGVNYPWYGN .:::::::::::::.::::::::::::::: gi|739 PPIPKKETWIVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIEAISDSDGVNYPWYGN 240 250 260 270 280 290 50 60 70 80 90 100 FLJ000 TTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 TTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATN 300 310 320 330 340 350 110 120 130 140 150 160 FLJ000 TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 TSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKP 360 370 380 390 400 410 170 180 190 FLJ000 NANDAQVLMWRPKYGQPLVVIPPKHR :::::::::::::::::::::::::: gi|739 NANDAQVLMWRPKYGQPLVVIPPKHR 420 430 440 195 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 13:37:40 2009 done: Fri Feb 27 13:42:11 2009 Total Scan time: 646.530 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]