# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00023.fasta.nr -Q ../query/FLJ00023.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00023, 192 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827409 sequences Expectation_n fit: rho(ln(x))= 4.8760+/-0.000184; mu= 9.5584+/- 0.010 mean_var=71.9028+/-14.435, 0's: 34 Z-trim: 34 B-trim: 2762 in 1/64 Lambda= 0.151252 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|10440375|dbj|BAB15723.1| FLJ00023 protein [Homo ( 192) 1291 290.0 1.4e-76 gi|109098041|ref|XP_001091560.1| PREDICTED: simila ( 202) 1202 270.6 1e-70 gi|13633894|sp|P82663.1|RT25_HUMAN RecName: Full=2 ( 173) 1178 265.3 3.5e-69 gi|149728248|ref|XP_001491213.1| PREDICTED: simila ( 173) 1114 251.4 5.6e-65 gi|73984967|ref|XP_533729.2| PREDICTED: similar to ( 287) 1113 251.3 9.4e-65 gi|108935900|sp|P82669.2|RT25_BOVIN RecName: Full= ( 173) 1088 245.7 2.8e-63 gi|13633926|sp|Q9D125.1|RT25_MOUSE RecName: Full=2 ( 171) 1058 239.1 2.6e-61 gi|149412648|ref|XP_001506359.1| PREDICTED: hypoth ( 173) 1052 237.8 6.6e-61 gi|126336453|ref|XP_001376586.1| PREDICTED: hypoth ( 173) 1050 237.4 8.9e-61 gi|12850405|dbj|BAB28705.1| unnamed protein produc ( 171) 1047 236.7 1.4e-60 gi|81918195|sp|Q4QR80.1|RT25_RAT RecName: Full=28S ( 171) 1045 236.3 1.9e-60 gi|47847384|dbj|BAD21364.1| mFLJ00023 protein [Mus ( 164) 1005 227.6 7.7e-58 gi|197128890|gb|ACH45388.1| putative mitochondrial ( 171) 998 226.1 2.3e-57 gi|197128891|gb|ACH45389.1| putative mitochondrial ( 171) 989 224.1 9e-57 gi|118097109|ref|XP_414461.2| PREDICTED: hypotheti ( 173) 978 221.7 4.8e-56 gi|146327086|gb|AAI41733.1| LOC100049746 protein [ ( 173) 942 213.8 1.1e-53 gi|77748167|gb|AAI06568.1| LOC733400 protein [Xeno ( 172) 935 212.3 3.2e-53 gi|47223193|emb|CAG11328.1| unnamed protein produc ( 172) 911 207.1 1.2e-51 gi|209731242|gb|ACI66490.1| Mitochondrial 28S ribo ( 172) 902 205.1 4.7e-51 gi|209737042|gb|ACI69390.1| Mitochondrial 28S ribo ( 172) 902 205.1 4.7e-51 gi|62204862|gb|AAH92991.1| Zgc:110709 [Danio rerio ( 173) 885 201.4 6.1e-50 gi|194376620|dbj|BAG57456.1| unnamed protein produ ( 145) 740 169.7 1.8e-40 gi|116116959|gb|EAA00469.3| AGAP012136-PA [Anophel ( 168) 711 163.4 1.6e-38 gi|72022689|ref|XP_795397.1| PREDICTED: similar to ( 187) 690 158.9 4.2e-37 gi|167878045|gb|EDS41428.1| mitochondrial 28S ribo ( 167) 679 156.4 2e-36 gi|108884488|gb|EAT48713.1| mitochondrial ribosoma ( 168) 679 156.4 2e-36 gi|194188100|gb|EDX01684.1| GE16111 [Drosophila ya ( 167) 671 154.7 6.8e-36 gi|210094132|gb|EEA42320.1| hypothetical protein B ( 169) 670 154.5 8e-36 gi|54643127|gb|EAL31871.1| GA12964 [Drosophila pse ( 167) 659 152.1 4.2e-35 gi|194126834|gb|EDW48877.1| GM17546 [Drosophila se ( 167) 658 151.9 4.9e-35 gi|193901429|gb|EDW00296.1| GH12785 [Drosophila gr ( 167) 656 151.4 6.6e-35 gi|13633946|sp|Q9VY28.1|RT25_DROME RecName: Full=P ( 167) 652 150.5 1.2e-34 gi|190649818|gb|EDV47096.1| GG19455 [Drosophila er ( 167) 649 149.9 1.9e-34 gi|48102586|ref|XP_395393.1| PREDICTED: similar to ( 169) 642 148.4 5.5e-34 gi|194157230|gb|EDW72131.1| GK10306 [Drosophila wi ( 167) 640 147.9 7.4e-34 gi|190619560|gb|EDV35084.1| GF22384 [Drosophila an ( 167) 640 147.9 7.4e-34 gi|156543332|ref|XP_001607001.1| PREDICTED: simila ( 169) 640 147.9 7.5e-34 gi|119584622|gb|EAW64218.1| mitochondrial ribosoma ( 101) 627 144.9 3.7e-33 gi|193580206|ref|XP_001945038.1| PREDICTED: simila ( 167) 627 145.1 5.3e-33 gi|193912115|gb|EDW10982.1| GI14011 [Drosophila mo ( 167) 626 144.9 6.2e-33 gi|215510818|gb|EEC20271.1| ribosomal protein mRpS ( 172) 620 143.6 1.6e-32 gi|95102638|gb|ABF51257.1| mitochondrial 28S ribos ( 167) 616 142.7 2.8e-32 gi|91083589|ref|XP_968607.1| PREDICTED: similar to ( 168) 605 140.3 1.5e-31 gi|194149436|gb|EDW65127.1| GJ19070 [Drosophila vi ( 167) 596 138.3 5.8e-31 gi|119584621|gb|EAW64217.1| mitochondrial ribosoma ( 112) 555 129.2 2.1e-28 gi|194385044|dbj|BAG60928.1| unnamed protein produ ( 129) 551 128.4 4.3e-28 gi|212508018|gb|EEB11837.1| ribosomal protein S25, ( 176) 505 118.5 5.7e-25 gi|198429299|ref|XP_002131443.1| PREDICTED: simila ( 208) 459 108.5 6.8e-22 gi|158593575|gb|EDP32170.1| 28S ribosomal protein ( 171) 450 106.5 2.3e-21 gi|156221688|gb|EDO42540.1| predicted protein [Nem ( 166) 430 102.1 4.6e-20 >>gi|10440375|dbj|BAB15723.1| FLJ00023 protein [Homo sap (192 aa) initn: 1291 init1: 1291 opt: 1291 Z-score: 1531.0 bits: 290.0 E(): 1.4e-76 Smith-Waterman score: 1291; 100.000% identity (100.000% similar) in 192 aa overlap (1-192:1-192) 10 20 30 40 50 60 FLJ000 FLVAARLAARGVGPATVAAMPMKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 FLVAARLAARGVGPATVAAMPMKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELG 10 20 30 40 50 60 70 80 90 100 110 120 FLJ000 EGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 EGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEH 70 80 90 100 110 120 130 140 150 160 170 180 FLJ000 IRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 IRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRG 130 140 150 160 170 180 190 FLJ000 KYKAALKADAQD :::::::::::: gi|104 KYKAALKADAQD 190 >>gi|109098041|ref|XP_001091560.1| PREDICTED: similar to (202 aa) initn: 1202 init1: 1202 opt: 1202 Z-score: 1425.7 bits: 270.6 E(): 1e-70 Smith-Waterman score: 1202; 95.676% identity (98.378% similar) in 185 aa overlap (8-192:18-202) 10 20 30 40 50 FLJ000 FLVAARLAARGVGPATVAAMPMKGRFPIRRTLQYLSQGNVVFKDSVKVMT : :::::::::::::::::::::::::::::::::.:::::: gi|109 MHTPALAAPESFSSLFGARSGVGPATVAAMPMKGRFPIRRTLQYLSQGNVVFKESVKVMT 10 20 30 40 50 60 60 70 80 90 100 110 FLJ000 VNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVE 70 80 90 100 110 120 120 130 140 150 160 170 FLJ000 TKSNKEIMEHIRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLRECICEVEGQVPCPS :::::::::::::::::::::::::::.::.::::::::::::::::::::::::::::: gi|109 TKSNKEIMEHIRKILGKNEETLREEEEKKKELSHPANFGPRKYCLRECICEVEGQVPCPS 130 140 150 160 170 180 180 190 FLJ000 LVPLPKEMRGKYKAALKADAQD .::::::::::::: :::.::: gi|109 VVPLPKEMRGKYKAILKASAQD 190 200 >>gi|13633894|sp|P82663.1|RT25_HUMAN RecName: Full=28S r (173 aa) initn: 1178 init1: 1178 opt: 1178 Z-score: 1398.3 bits: 265.3 E(): 3.5e-69 Smith-Waterman score: 1178; 100.000% identity (100.000% similar) in 173 aa overlap (20-192:1-173) 10 20 30 40 50 60 FLJ000 FLVAARLAARGVGPATVAAMPMKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELG ::::::::::::::::::::::::::::::::::::::::: gi|136 MPMKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELG 10 20 30 40 70 80 90 100 110 120 FLJ000 EGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 EGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEH 50 60 70 80 90 100 130 140 150 160 170 180 FLJ000 IRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 IRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRG 110 120 130 140 150 160 190 FLJ000 KYKAALKADAQD :::::::::::: gi|136 KYKAALKADAQD 170 >>gi|149728248|ref|XP_001491213.1| PREDICTED: similar to (173 aa) initn: 1114 init1: 1114 opt: 1114 Z-score: 1322.8 bits: 251.4 E(): 5.6e-65 Smith-Waterman score: 1114; 92.486% identity (98.844% similar) in 173 aa overlap (20-192:1-173) 10 20 30 40 50 60 FLJ000 FLVAARLAARGVGPATVAAMPMKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELG ::::::::::::::::.::.::::::::::::::::::::: gi|149 MPMKGRFPIRRTLQYLGQGDVVFKDSVKVMTVNYNTHGELG 10 20 30 40 70 80 90 100 110 120 FLJ000 EGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 EGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEH 50 60 70 80 90 100 130 140 150 160 170 180 FLJ000 IRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRG :.:.::::::::..::.:::::::::.::::::::::::::::::::::.:::::::: : gi|149 IKKVLGKNEETLKKEEQEKKQLSHPAHFGPRKYCLRECICEVEGQVPCPGLVPLPKEMTG 110 120 130 140 150 160 190 FLJ000 KYKAALKADAQD ::::.:.: ::: gi|149 KYKATLRAGAQD 170 >>gi|73984967|ref|XP_533729.2| PREDICTED: similar to Mit (287 aa) initn: 1113 init1: 1113 opt: 1113 Z-score: 1318.8 bits: 251.3 E(): 9.4e-65 Smith-Waterman score: 1113; 87.097% identity (96.774% similar) in 186 aa overlap (7-192:102-287) 10 20 30 FLJ000 FLVAARLAARGVGPATVAAMPMKGRFPIRRTLQYLS ..: : . :..::::::::::::::::::. gi|739 APCACAVSGDQPGGEAERGPPGLRRWLLLGFSAAGPAAAAAAAMPMKGRFPIRRTLQYLG 80 90 100 110 120 130 40 50 60 70 80 90 FLJ000 QGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLR ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 QGDVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLR 140 150 160 170 180 190 100 110 120 130 140 150 FLJ000 FYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLR :::::::::::::::::::::.:::.::::::.:::.:::.:::::::::.::::::::: gi|739 FYLDSGEQVLVDVETKSNKEIVEHIKKILGKNKETLEEEEQEKKQLSHPAHFGPRKYCLR 200 210 220 230 240 250 160 170 180 190 FLJ000 ECICEVEGQVPCPSLVPLPKEMRGKYKAALKADAQD :::::::::::::.:.:::::. ::::: : :..:: gi|739 ECICEVEGQVPCPGLLPLPKELTGKYKAMLTASTQD 260 270 280 >>gi|108935900|sp|P82669.2|RT25_BOVIN RecName: Full=28S (173 aa) initn: 1088 init1: 1088 opt: 1088 Z-score: 1292.2 bits: 245.7 E(): 2.8e-63 Smith-Waterman score: 1088; 88.439% identity (98.844% similar) in 173 aa overlap (20-192:1-173) 10 20 30 40 50 60 FLJ000 FLVAARLAARGVGPATVAAMPMKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELG :::::::::::::::::::.::::::::::::::::::::: gi|108 MPMKGRFPIRRTLQYLSQGDVVFKDSVKVMTVNYNTHGELG 10 20 30 40 70 80 90 100 110 120 FLJ000 EGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEH ::::::::::::::::::::::::.::::::.:::::::::::::::::::::::::::: gi|108 EGARKFVFFNIPQIQYKNPWVQIMLFKNMTPTPFLRFYLDSGEQVLVDVETKSNKEIMEH 50 60 70 80 90 100 130 140 150 160 170 180 FLJ000 IRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRG ..:::::::::::.:..:..::::::.::::::::::::::::::::::..::::.:. : gi|108 VKKILGKNEETLRRERQEREQLSHPAHFGPRKYCLRECICEVEGQVPCPAVVPLPRELTG 110 120 130 140 150 160 190 FLJ000 KYKAALKADAQD :..:::.: ::: gi|108 KFQAALRAGAQD 170 >>gi|13633926|sp|Q9D125.1|RT25_MOUSE RecName: Full=28S r (171 aa) initn: 1058 init1: 1058 opt: 1058 Z-score: 1256.9 bits: 239.1 E(): 2.6e-61 Smith-Waterman score: 1058; 90.533% identity (97.633% similar) in 169 aa overlap (20-188:1-169) 10 20 30 40 50 60 FLJ000 FLVAARLAARGVGPATVAAMPMKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELG ::::::::::::::::..:.::::.:::.:::::::.:::: gi|136 MPMKGRFPIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELG 10 20 30 40 70 80 90 100 110 120 FLJ000 EGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 EGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEH 50 60 70 80 90 100 130 140 150 160 170 180 FLJ000 IRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRG :.:::::.:::::::: ::.: ::.::::::::::::.::::::::::.:::::::: : gi|136 IKKILGKKEETLREEELEKQQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTG 110 120 130 140 150 160 190 FLJ000 KYKAALKADAQD :::::::: gi|136 KYKAALKAST 170 >>gi|149412648|ref|XP_001506359.1| PREDICTED: hypothetic (173 aa) initn: 1052 init1: 1052 opt: 1052 Z-score: 1249.7 bits: 237.8 E(): 6.6e-61 Smith-Waterman score: 1052; 86.127% identity (97.688% similar) in 173 aa overlap (20-192:1-173) 10 20 30 40 50 60 FLJ000 FLVAARLAARGVGPATVAAMPMKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELG :::::::::::::::::::..:::..::::::::::.: :. gi|149 MPMKGRFPIRRTLQYLSQGDIVFKNAVKVMTVNYNTQGALS 10 20 30 40 70 80 90 100 110 120 FLJ000 EGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEH .:::::::::::::::::::::::::::::::::::::::.:::::::::.::::::::: gi|149 DGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDTGEQVLVDVENKSNKEIMEH 50 60 70 80 90 100 130 140 150 160 170 180 FLJ000 IRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRG :.:::::.: ::..::.:: .:::::::::.::::::::::::::::::..::::::: : gi|149 IKKILGKSELTLKKEEQEKMKLSHPANFGPKKYCLRECICEVEGQVPCPAVVPLPKEMTG 110 120 130 140 150 160 190 FLJ000 KYKAALKADAQD ::.::::::::. gi|149 KYRAALKADAQE 170 >>gi|126336453|ref|XP_001376586.1| PREDICTED: hypothetic (173 aa) initn: 1050 init1: 1050 opt: 1050 Z-score: 1247.4 bits: 237.4 E(): 8.9e-61 Smith-Waterman score: 1050; 86.705% identity (97.110% similar) in 173 aa overlap (20-192:1-173) 10 20 30 40 50 60 FLJ000 FLVAARLAARGVGPATVAAMPMKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELG : ::::::::::::::.::..:::.:::::::::::::::. gi|126 MLMKGRFPIRRTLQYLKQGDIVFKNSVKVMTVNYNTHGELS 10 20 30 40 70 80 90 100 110 120 FLJ000 EGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEH :::::::::::::::::::::::::::::::::::::::::::::::::: ::: :::.: gi|126 EGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVEDKSNLEIMQH 50 60 70 80 90 100 130 140 150 160 170 180 FLJ000 IRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRG ..::::::::.:..:: :::.:::::.:::.::::::::::::::::::..::::::: : gi|126 VKKILGKNEEVLKREELEKKKLSHPAHFGPKKYCLRECICEVEGQVPCPAIVPLPKEMTG 110 120 130 140 150 160 190 FLJ000 KYKAALKADAQD ::::.:::.::: gi|126 KYKATLKANAQD 170 >>gi|12850405|dbj|BAB28705.1| unnamed protein product [M (171 aa) initn: 1047 init1: 1047 opt: 1047 Z-score: 1243.9 bits: 236.7 E(): 1.4e-60 Smith-Waterman score: 1047; 89.941% identity (97.041% similar) in 169 aa overlap (20-188:1-169) 10 20 30 40 50 60 FLJ000 FLVAARLAARGVGPATVAAMPMKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELG ::::::::::::::::..:.::::.:::.:::::::.:::: gi|128 MPMKGRFPIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELG 10 20 30 40 70 80 90 100 110 120 FLJ000 EGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEH :::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: gi|128 EGARKFVFFNIPQIQYKNSWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEH 50 60 70 80 90 100 130 140 150 160 170 180 FLJ000 IRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRG :.:::::.:::::::: ::.: ::.::::::::::::.::::::::::.:::::::: : gi|128 IKKILGKKEETLREEELEKQQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTG 110 120 130 140 150 160 190 FLJ000 KYKAALKADAQD :::::::: gi|128 KYKAALKAST 170 192 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 13:32:58 2009 done: Fri Feb 27 13:37:31 2009 Total Scan time: 647.260 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]