hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna/full/aisin/as00021/interpro/cnk_1/seq.in
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Query:  as00021  508

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Aa_trans     Transmembrane amino acid transporter pro   -71.7    0.00044   1
Trp_Tyr_perm Tryptophan/tyrosine permease family       -274.5       0.27   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Trp_Tyr_perm   1/1      33   473 ..     1   441 []  -274.5     0.27
Aa_trans       1/1      22   502 ..     1   461 []   -71.7  0.00044

Alignments of top-scoring domains:
Trp_Tyr_perm: domain 1 of 1, from 33 to 473: score -274.5, E = 0.27
                   *->KtpSllGGvliIAGTvIGAGMLAlPvatAGaGFipslllLillWflm
                      +         +I GT    G L +P a A aG  +sl+lL++l f++
     as00021    33    MF-------NLIVGT----GALTMPKAFATAGWLVSLVLLVFLGFMS 68   

                   laSGLllLEvyltypeek................................
                   + +   + E++ ++ ++ + ++ ++ ++++++++++ ++++   +++ ++
     as00021    69 FVTTTFVIEAMAAANAQLhwkrmenlkeeedddsstasdsdvlirdnyer 118  

                   .....................ngasfgTlAkdlLGkkgniiaglvyaFll
                    ++++  + ++++++++ + + ++ +g +A   + k+g  +  + +++ l
     as00021   119 aekrpilsvqrrgspnpfeitDRVEMGQMASMFFNKVGVNLFYFCIIVYL 168  

                   YiLtyAYISggGsILsrlipemfgsiswsaraavli..............
                   Y  ++ Y  +    L+++  +++g    ++  +v  +++ +++++  ++ 
     as00021   169 YGDLAIYAAAVPFSLMQVTCSATG----NDSCGVEAdtkyndtdrcwgpl 214  

                   ...........vFtllfGsfvwl...gTkNavDrinrvLlfgkiiaFalv
                   ++ +  +    +Ftll+G+f  ++ ++Tk     ++++      iaFa++
     as00021   215 rrvdayriylaIFTLLLGPFTFFdvqKTK-YLQILTSL---MRWIAFAVM 260  

                   fslllpkikgdlLldaatvalsdtsywpyiLsalPVfltSFGFHgnVPSL
                    +l l +i             + +++++ + + + V++ SF  +++ PSL
     as00021   261 IVLALIRIGHGQGEG-----HPPLADFSGVRNLFGVCVYSFMCQHSLPSL 305  

                   ykYygknvkkvrkaIliGtaipLvlY.ilWqlatlGnlPreeFaqIiakG
                   +     +++ +++ ++   ++ L+ Y++l   a++       F +    +
     as00021   306 ITPVS-SKRHLTRLVFLDYVLILAFYgLLSFTAIFC------FRGDSLMD 348  

                   GnldtlveALlgvleSpsielalelFsffAlatSF..LGVaL.....GLf
                      +tl  A   v++  ++ ++l lF  f + t F+ ++V+L+++ + Lf
     as00021   349 --MYTLNFARCDVVGLAAVRFFLGLFPVFTISTNFpiIAVTLrnnwkTLF 396  

                   DyLaDlFKfvddsknGRfktgllTFlPKERDRRTNGRASYNEPARARDGF
                        +  +    ++ R+    +T +P                       
     as00021   397 HREGGTYPW----VVDRVVFPTITLVP----------------------- 419  

                   EAVVMLFVLGVPLvlAlffPeGFlyAL.gYAGglaatiwavIlPalLawk
                              P+++A++     l  L g +G++a t +  ++Pa+L++ 
     as00021   420 -----------PVLVAFC--THDLESLvGITGAYAGTGIQYVIPAFLVYH 456  

                   aRkrfpnapgyrVwGGnktlllvllfGivvilvh<-*
                    R+  + a+                 G+ v   h   
     as00021   457 CRRDTQLAF-----------------GCGVSNKH    473  

Aa_trans: domain 1 of 1, from 22 to 502: score -71.7, E = 0.00044
                   *->rtisalqavfnlikaivGaGvLsLPyAfkqlGwipGlillvlvglis
                         s   ++  + + ivG+G L++P Af+ +Gw+++l+llv++g+ s
     as00021    22    ELYSSYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLVFLGFMS 68   

                   lytlllLvkcskyldkv.................................
                   + t +  +++    ++  + ++ ++ ++++++++++ ++++   +++ ++
     as00021    69 FVTTTFVIEAMAAANAQlhwkrmenlkeeedddsstasdsdvlirdnyer 118  

                   .................ekgkrrksYgdlgkasqvsypyrllGpkmgrll
                    ++++  + ++++++++++   r   g+++           +++  g+ l
     as00021   119 aekrpilsvqrrgspnpFEITDRVEMGQMA--------SMFFNKV-GVNL 159  

                   infaillnlfGvcivYlifagdnLpaifdsffsd...........ksgen
                   + f+i+++l G   +Y  ++  +L+++  s  ++++ + + +++ ++   
     as00021   160 FYFCIIVYLYGDLAIYAAAVPFSLMQVTCSATGNdscgveadtkyNDTDR 209  

                   dpchisla....yfilifglifipLsvflp..nlsaLsilSlvaavssli
                    ++++++++  +++ +if+l + p++ f+  ++ ++L i  l ++   ++
     as00021   210 CWGPLRRVdayrIYLAIFTLLLGPFT-FFDvqKTKYLQI--LTSLMRWIA 256  

                   ysiglliivilvvivvellvltaqgvslltaswctPstfiklkglflaiG
                   +      +v +v++ + ++++++ g++ l+        ++   g    +G
     as00021   257 F------AVMIVLALIRIGHGQGEGHPPLA--------DFS--GVRNLFG 290  

                   iivFAfeGhavllpIqntmksTPskFkskpmtkvllvaiiivtvlyilvG
                   + v++f +++ l+++++ + s   +       +++ + + +  ++y l  
     as00021   291 VCVYSFMCQHSLPSLITPVSS-KRHLT-----RLVFLDYVLILAFYGLLS 334  

                   lvGYltF.GnnvkgnillnlpnsdPnpvwliiivnlllvlhllls....y
                   +   + F+G++  +  +ln+   d   v+  ++v+++l+l  +++ ++++
     as00021   335 FTAIFCFrGDSLMDMYTLNFARCD---VVGLAAVRFFLGLFPVFTistnF 381  

                   plqafPivemienllfrkplednseddeetseilnnasgkhtpkskllrf
                   p+ a  ++  +++l++r+                   +g  ++++   r+
     as00021   382 PIIAVTLRNNWKTLFHRE-------------------GGTYPWVV--DRV 410  

                   viRsglVvvtyliAwiliPflgdllsLvGAtsgapltfilPplfhlklkk
                   v+ ++ +v  +l+A      l  l++++GA +g+++ +++P+++ + +++
     as00021   411 VFPTITLVPPVLVA-FCTHDLESLVGITGAYAGTGIQYVIPAFLVYHCRR 459  

                   pkkksle.......klwfkkildvicivvglllmaygvyglil<-*
                    ++ +++ + +++++  f+ ++ v ++ + ++++++ v + i+   
     as00021   460 DTQLAFGcgvsnkhRSPFRHTFWVGFVLLWAFSCFIFVTANII    502  

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