hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna/full/aisin/as00017/interpro/cnk_1/seq.in
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Query:  as00017  291

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sec7     Sec7 domain                                    277.0    1.5e-78   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sec7       1/1      71   265 ..     1   226 []   277.0  1.5e-78

Alignments of top-scoring domains:
Sec7: domain 1 of 1, from 71 to 265: score 277.0, E = 1.5e-78
                   *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl
                        +++k l +g+kkfn++P kGiq+++e+ +l      + q++A+fl
     as00017    71    MAQKEKELCIGRKKFNMDPAKGIQYFIEHKLLT----PDVQDIARFL 113  

                   ydseSadadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgkd
                   y          ++eglnk+aiG yLge +d+ n++vL afvd+++F +++
     as00017   114 Y----------KGEGLNKTAIGTYLGE-RDPINLQVLQAFVDCHEFANLN 152  

                   ldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslski
                   l++ALR+fL+sfrLPGEaQkIDR++eaF+ rYc cNpgvf+         
     as00017   153 LVQALRQFLWSFRLPGEAQKIDRMMEAFATRYCLCNPGVFQ--------- 193  

                   qqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNlr
                       ++D++YvL++S+IMLNT LHnpnv++        ++ +e+F+ ++r
     as00017   194 ----STDTCYVLSFSIIMLNTSLHNPNVRD--------RPPFERFVSMNR 231  

                   ginkeiddgedlprefLeelYd.........sIknnei<-*
                   gin    +g dlp++ L+   + ++++++++ ++++e+   
     as00017   232 GIN----NGSDLPEDQLRVTWEcsqrrsrerTFQKEEV    265  

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