hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna/full/aisin/as00017/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  as00017  291

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sec7     Sec7 domain                                    310.0    2.8e-89   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sec7       1/1      70   265 ..     1   221 []   310.0  2.8e-89

Alignments of top-scoring domains:
Sec7: domain 1 of 1, from 70 to 265: score 310.0, E = 2.8e-89
                   *->lksrk.kqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLl
                      ++++k+k+l +grkkFN++P+kGi+  i+  ll+   d qdiA fL+
     as00017    70    RMAQKeKELCIGRKKFNMDPAKGIQYFIEHKLLT--PDVQDIARFLY 114  

                   eeteGLdKkaiGefLGenddfniqvLneFvkNlFdFtglpLdeALRlfLk
                    ++eGL+K+aiG +LGe+d+ n+qvL +Fv+ +++F +l+L++ALR+fL+
     as00017   115 -KGEGLNKTAIGTYLGERDPINLQVLQAFVD-CHEFANLNLVQALRQFLW 162  

                   sFRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDs
                   sFRLPGEaQkIdR++eaF+ rY+ c  Npgvf+++             D+
     as00017   163 SFRLPGEAQKIDRMMEAFATRYCLC--NPGVFQST-------------DT 197  

                   ayvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdLREENEYEEL
                   +yvLs+S+IMLNT+LH Np+V+++   + +e+F+ +nr            
     as00017   198 CYVLSFSIIMLNTSLH-NPNVRDR---PPFERFVSMNR------------ 231  

                   gindGgDlprefLtelYe.........sIkneei<-*
                   gin+G Dlp+++L+   e +++++++++ ++ee    
     as00017   232 GINNGSDLPEDQLRVTWEcsqrrsrerTFQKEEV    265  

//