# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00016.fasta.huge -Q ../query/FLJ00016.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00016, 349 aa vs ./tmplib.10216 library 2210645 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.5605+/-0.00453; mu= 24.5450+/- 0.306 mean_var=124.1210+/-27.437, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.115120 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00042 ( 452 res) as00042 ( 452) 110 28.7 0.9 KIAA1545 ( 968 res) fj14026s1 ( 968) 108 29.0 1.6 KIAA0793 ( 1055 res) hk05692 (1055) 108 29.1 1.6 KIAA1030 ( 763 res) fh00432 ( 763) 101 27.6 3.2 KIAA0458 ( 1552 res) ef01252 (1552) 102 28.4 3.8 KIAA1490 ( 749 res) fj08103 ( 749) 98 27.1 4.4 FLJ00232 ( 318 res) sj06640 ( 318) 94 25.7 4.9 FLJ00086 ( 399 res) as00086 ( 399) 94 25.9 5.4 KIAA1938 ( 1376 res) hg00912s1 (1376) 98 27.6 5.7 FLJ00403 ( 225 res) sj07657 ( 225) 90 24.8 6.8 FLJ00038 ( 199 res) as00038 ( 199) 89 24.5 7.2 KIAA1644 ( 132 res) fg07060 ( 132) 87 23.8 7.7 KIAA0817 ( 2785 res) hg01392s2 (2785) 96 27.9 9.5 KIAA1681 ( 1236 res) fh23697 (1236) 90 26.2 14 FLJ00105 ( 721 res) as00105 ( 721) 88 25.4 14 FLJ00098 ( 780 res) as00098 ( 780) 88 25.5 14 FLJ00163 ( 521 res) sh06933 ( 521) 86 24.8 15 KIAA0441 ( 702 res) hh00601s1 ( 702) 87 25.2 15 KIAA0502 ( 144 res) hh00007 ( 144) 81 22.9 16 KIAA1481 ( 1380 res) fj05724 (1380) 89 26.1 16 KIAA0639 ( 1835 res) fg02716y2 (1835) 90 26.5 16 KIAA0156 ( 963 res) ha03253 ( 963) 87 25.5 17 KIAA0096 ( 766 res) ha01240s1 ( 766) 86 25.1 18 KIAA1139 ( 1124 res) hk00330 (1124) 87 25.6 19 KIAA1886 ( 655 res) fk01837 ( 655) 85 24.8 19 FLJ00315 ( 925 res) sh06842 ( 925) 86 25.3 19 KIAA1602 ( 1003 res) fj10252 (1003) 86 25.4 20 KIAA1261 ( 787 res) hh15855b ( 787) 84 24.8 23 KIAA0641 ( 1326 res) hj03494s1 (1326) 85 25.4 25 KIAA1881 ( 1348 res) ah02284 (1348) 85 25.5 25 KIAA0200 ( 1042 res) ha02508 (1042) 84 25.1 25 KIAA1862 ( 1070 res) aj00563 (1070) 84 25.1 26 KIAA0867 ( 568 res) hk06783 ( 568) 81 24.1 28 KIAA1440 ( 1377 res) hg02441b (1377) 84 25.3 28 KIAA1016 ( 793 res) hk03719s1 ( 793) 82 24.5 28 KIAA1076 ( 804 res) hj06779 ( 804) 82 24.5 29 KIAA0630 ( 490 res) hh01735 ( 490) 80 23.8 29 KIAA0951 ( 679 res) hj05306 ( 679) 81 24.2 30 KIAA0613 ( 734 res) hg01088b ( 734) 81 24.3 31 FLJ00321 ( 245 res) sh07670 ( 245) 77 22.7 31 KIAA0361 ( 1371 res) hh00072 (1371) 83 25.1 32 FLJ00406 ( 261 res) sj08464 ( 261) 77 22.7 32 KIAA0505 ( 200 res) hh00043 ( 200) 76 22.3 32 KIAA1260 ( 817 res) hh15752 ( 817) 81 24.4 32 FLJ00248 ( 501 res) sj08681 ( 501) 79 23.6 33 KIAA1539 ( 543 res) fg02356 ( 543) 79 23.7 34 FLJ00296 ( 187 res) sh03944 ( 187) 75 22.1 35 KIAA0527 ( 768 res) hg02246 ( 768) 80 24.1 35 KIAA0401 ( 344 res) hg01095 ( 344) 77 23.0 36 KIAA0314 ( 1899 res) af02425 (1899) 83 25.4 36 >>FLJ00042 ( 452 res) as00042 (452 aa) initn: 117 init1: 65 opt: 110 Z-score: 107.2 bits: 28.7 E(): 0.9 Smith-Waterman score: 110; 33.654% identity (51.923% similar) in 104 aa overlap (23-119:91-187) 10 20 30 40 50 FLJ000 GVLGGGDGVWDDASRHGGNGVARLWGWQDSPPV-PALKRGGLCRTSGASVGG :.:: .: :. ::. . :: FLJ000 AIAHSILGSLTWSCLTWSHPALSCDPTSPERVWGVPQSEPLRPAVL---FLPQFPNPRGG 70 80 90 100 110 60 70 80 90 100 FLJ000 LLQTWGPAVSAATGLGPAPASQVV--WRKPQSLNQYPC--PTPSLFL-ASLGSGKGELSV . :::..:: ::::. . : . . : : :.::: .:: . : :.. FLJ000 TRR--GPALGAALGLGPSDLGVFGSHWGQTDEAAPAACLLP-PALFLWPGLGPSVG-LDL 120 130 140 150 160 170 110 120 130 140 150 160 FLJ000 PSL-APLCLHQPGGWAQACGGGEVATHLAVPALSQTALYSCSLGLFPNRVRLLGWAWLTW : : .: : :.: FLJ000 PLLLSPSQAHAPAGSHVPAGSLTSQPGFAFQIRTKWIPLVNGGTTQGPRVPIILVGNKSD 180 190 200 210 220 230 >>KIAA1545 ( 968 res) fj14026s1 (968 aa) initn: 104 init1: 77 opt: 108 Z-score: 102.9 bits: 29.0 E(): 1.6 Smith-Waterman score: 117; 31.250% identity (51.389% similar) in 144 aa overlap (32-152:166-307) 10 20 30 40 50 60 FLJ000 VLGGGDGVWDDASRHGGNGVARLWGWQDSPPVPALKRGGLCRTSGASVGGLLQTWGPAVS ::: : .:: :. :. ..: : .:: KIAA15 DDKASVGSEKLFAPGTDKGPALEKSEAKAGPVP--KVSGLERSRELSAESFLPTASPAPH 140 150 160 170 180 190 70 80 90 100 FLJ000 AATGLGPAPASQ---VVWRKPQSLN----QYPCPTPSLFL-----ASLGSGKGE------ :: :: :.:. .: ..: . . : : : : .: ::::. :. KIAA15 AAPCPGPPPGSRANPLVKKEPPAPHRHTPQPPPPQPRGLLPTHVPASLGAFAGHSQAAAN 200 210 220 230 240 250 110 120 130 140 150 FLJ000 ----LSVPSLAPLCLHQPGGWAQACGGGEVAT-HLAVPALSQTALYSCSLGLFPNRVRLL :: : ::: : . . . : ...: :::. . .: :.. .. : KIAA15 GLHGLSRSSSAPLGLGKHVSLSPHGPGPHLSTSHLALRSQAQHQLHAAMFAAPPTLPPPP 260 270 280 290 300 310 160 170 180 190 200 210 FLJ000 GWAWLTWGSPLPPQWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAEDVL KIAA15 ALPASSLVLPGHPADHELLRQELNTRFLVQSAERPGASLGPGALLRAEFHQHQHTHQHTH 320 330 340 350 360 370 >>KIAA0793 ( 1055 res) hk05692 (1055 aa) initn: 41 init1: 41 opt: 108 Z-score: 102.7 bits: 29.1 E(): 1.6 Smith-Waterman score: 108; 30.973% identity (47.788% similar) in 113 aa overlap (31-137:433-534) 10 20 30 40 50 60 FLJ000 GVLGGGDGVWDDASRHGGNGVARLWGWQDSPPVPALKRGGLCRTSGASVGGLLQTWGPAV : : .: . : ::: .: :: . KIAA07 SANAFYSLSPSTLVPSGLPEFKDSSSSLTDPQVSYVKSPAAERRSGAVAG------GPDT 410 420 430 440 450 70 80 90 100 110 FLJ000 SAATGLGPA---PASQVVWRKPQ---SLNQYPCPTPSLFLASLGSGKGELSVPSLAPLCL .: ::: :. . ..:: : . : : . :: .. . : : :.:. : KIAA07 PSAQPLGPPALQPGPGLSTKSPQPSPSSRKSPLSLSPAFQVPLGPAE-QGSSPLLSPV-L 460 470 480 490 500 510 120 130 140 150 160 170 FLJ000 HQPGGWAQACGGGEVATHLAVPALSQTALYSCSLGLFPNRVRLLGWAWLTWGSPLPPQWS . :: .. : : : ::: KIAA07 SDAGGAGMDC---EEPRHKRVPADEAYFIVKEILATERTYLKDLEVITVWFRSAVVKEDA 520 530 540 550 560 570 >>KIAA1030 ( 763 res) fh00432 (763 aa) initn: 108 init1: 79 opt: 101 Z-score: 97.4 bits: 27.6 E(): 3.2 Smith-Waterman score: 104; 26.500% identity (45.500% similar) in 200 aa overlap (27-203:535-725) 10 20 30 40 50 FLJ000 GVLGGGDGVWDDASRHGGNGVARLWGWQDSPPVPALKRGGLCRTSGASVGGLLQTW ::: : : ...: : .:: . .: KIAA10 YPGILSLEAPKGWAGKSPGRGPVPAPPAAKWQDRPMQPLVSQGQLRHTSQGMGIPVLPYP 510 520 530 540 550 560 60 70 80 90 100 FLJ000 GPAVSAATGLGPAPAS-QVVWRKPQSLNQYPCPT------PSLFLASLGSGK------GE :: .: : ::. . .. : .:: : : ::: . : .. . KIAA10 EPAEPGAHG-GPSTFGLDTRWYEPQP-RPRPSPRQARRAEPSLHQVVLQPSRLSPLTQSP 570 580 590 600 610 620 110 120 130 140 150 FLJ000 LSV----PSLAPLCLHQPGGWAQACGGGEVATHLAVPALSQTALYSC------SLGLFPN :: : :: .:: :: . . :. ..:. . : : . :. KIAA10 LSSRTGSPELAARARPRPGLLQQAEMSEITLQPPAAVSFSRKSTPSTGSPSQSSRSGSPS 630 640 650 660 670 680 160 170 180 190 200 210 FLJ000 RVRLLGWAWLTWGSPLPPQWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDP .:.. :. : : :: . ::.: .:... .:: .: : KIAA10 YRPAMGFTTLATGYPSPPPGP--APAGPGD-SLDVF----GQTPSPRRTGEELLRPETPP 690 700 710 720 730 220 230 240 250 260 270 FLJ000 AEDVLNTQCGYDVRLKLELEQQGFIHTKGCVGQFEKWLQDNLIVVAGVFMGIALLQIFGI KIAA10 PTLPTSGKLRRDRPAPATSPPERALSKL 740 750 760 >>KIAA0458 ( 1552 res) ef01252 (1552 aa) initn: 138 init1: 75 opt: 102 Z-score: 96.0 bits: 28.4 E(): 3.8 Smith-Waterman score: 102; 30.645% identity (58.065% similar) in 62 aa overlap (30-91:698-753) 10 20 30 40 50 FLJ000 GVLGGGDGVWDDASRHGGNGVARLWGWQDSPPVPALKRGGLCRTSGASVGGLLQTWGPA :: .:. . . ..... .::. :: KIAA04 EGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPS-PQDNESDSDSSAQQQMLQAQPPA 670 680 690 700 710 720 60 70 80 90 100 110 FLJ000 VSAATGLGPAPASQVVWRKPQSLNQYPCPTPSLFLASLGSGKGELSVPSLAPLCLHQPGG ..: ::. :::.: : . : : : :. KIAA04 LQAPTGVTPAPSSA-----PPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPV 730 740 750 760 770 780 120 130 140 150 160 170 FLJ000 WAQACGGGEVATHLAVPALSQTALYSCSLGLFPNRVRLLGWAWLTWGSPLPPQWSCCGAR KIAA04 PHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPH 790 800 810 820 830 840 >>KIAA1490 ( 749 res) fj08103 (749 aa) initn: 56 init1: 56 opt: 98 Z-score: 94.8 bits: 27.1 E(): 4.4 Smith-Waterman score: 98; 26.891% identity (47.899% similar) in 119 aa overlap (6-122:4-114) 10 20 30 40 50 FLJ000 GVLGGGDGVWDDASRHGGNGVARL-WGWQDSP-PVPALKRGGLCRTSGASVGGLLQTWGP :.: : .: . :: : . : : . :: : . .: : .. ::: KIAA14 SMSGSGRKDFDVKH----ILRLRWKLFSHPSPSTGGPAGGGCLQQDGS--GSFEHWGP 10 20 30 40 50 60 70 80 90 100 110 FLJ000 AVSAATGLGPAPASQVVWRKPQSLNQYPCPTPSLFLASLGSGKGELSVPSLAPLCLHQPG . : . .. :.::.: .. .:: .:.. .: : .: . : :: KIAA14 SQSRLLKSQERSGVSTFWKKPSS-SSSSSSSPSSSSSSFNPLNGTL-LPVATRLQQGAPG 60 70 80 90 100 110 120 130 140 150 160 170 FLJ000 GWAQACGGGEVATHLAVPALSQTALYSCSLGLFPNRVRLLGWAWLTWGSPLPPQWSCCGA .: KIAA14 QGTQQPARTLFYVESLEEEVVPGMDFPGPHEKGLVLQELKVEPDNSSQATGEGCGHRLSS 120 130 140 150 160 170 >>FLJ00232 ( 318 res) sj06640 (318 aa) initn: 39 init1: 39 opt: 94 Z-score: 93.9 bits: 25.7 E(): 4.9 Smith-Waterman score: 98; 28.571% identity (46.218% similar) in 119 aa overlap (67-181:215-316) 40 50 60 70 80 90 FLJ000 KRGGLCRTSGASVGGLLQTWGPAVSAATGLGPAPASQVVWRKPQSLNQYPCPTPSLFLAS :: : . . .:. . . : : : FLJ002 FEPSLVNSTVYIMAMAMQMATFAINYKVRPGPCPNIHCLPTQPHPM-KPSVPHPHRARPS 190 200 210 220 230 240 100 110 120 130 140 150 FLJ000 LGSGKGELSVPSLAPLC-LHQPGGWAQ-ACGGGEVATHLAVPALSQTALYSCSLGLFPNR . : .: : . : .: . ::... : : : : :.:.: : .: : FLJ002 WRA------CPRTSPWCGVWQFHSWPSLACSSAPRPTSTASLA-SWTSLWSSSWSL-P-- 250 260 270 280 290 160 170 180 190 200 210 FLJ000 VRLLGW--AWLTWGSPLPPQWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRD : .: :: .: : :: .. :: FLJ002 -RSCSWTSAWRSW-----PTASCSSSWGPRS 300 310 >>FLJ00086 ( 399 res) as00086 (399 aa) initn: 141 init1: 73 opt: 94 Z-score: 93.2 bits: 25.9 E(): 5.4 Smith-Waterman score: 94; 36.170% identity (68.085% similar) in 47 aa overlap (57-98:289-335) 30 40 50 60 70 80 FLJ000 WQDSPPVPALKRGGLCRTSGASVGGLLQTWGPAVSAATGL--GPAPASQVVWRKP---QS ::.. ...: ::::: .. . : . FLJ000 KPGTTLPQPPPTTCPPGALQAPEAPASRAEGPVAVVVNGHTEGPAPARSAPKEPPGLPRP 260 270 280 290 300 310 90 100 110 120 130 140 FLJ000 LNQYPCPTPSLFLASLGSGKGELSVPSLAPLCLHQPGGWAQACGGGEVATHLAVPALSQT :...:::::. . .:: FLJ000 LGSFPCPTPQEDFPALGGPCPPRMPPPPGFSAVVLLKGTPPPPPPGLVPPISKPPPGFSG 320 330 340 350 360 370 >>KIAA1938 ( 1376 res) hg00912s1 (1376 aa) initn: 116 init1: 85 opt: 98 Z-score: 92.8 bits: 27.6 E(): 5.7 Smith-Waterman score: 98; 26.596% identity (55.319% similar) in 94 aa overlap (47-132:897-990) 20 30 40 50 60 70 FLJ000 GGNGVARLWGWQDSPPVPALKRGGLCRTSGASVGGLLQTWGPAVSAATGLGPAPASQVVW :.:: ::.. ...:: :: ::::... KIAA19 MLSVNKSVSMLDLQGDGPGGRLNSSSVSNLAAVGDLLHSSQASLTAALGLRPAPAGRLSQ 870 880 890 900 910 920 80 90 100 110 120 FLJ000 RKPQSLNQYPCPTPSLFLASLGSGKGELSVP-SLAPLCLHQ-------PGGWAQACGGGE . .:.. .. ... : .: .: :. .:. ::: . . : : KIAA19 GSGSSITAAGMRLSQMGVTTDGVPAQQLRIPLSFQNPLFHMAADGPGPPGGHGGGGGHGP 930 940 950 960 970 980 130 140 150 160 170 180 FLJ000 VATHLAVPALSQTALYSCSLGLFPNRVRLLGWAWLTWGSPLPPQWSCCGARGPNDWNLNI ..: KIAA19 PSSHHHHHHHHHHRGGEPPGDTFAPFHGYSKSEDLSSGVPKPPAASILHSHSYSDEFGPS 990 1000 1010 1020 1030 1040 >>FLJ00403 ( 225 res) sj07657 (225 aa) initn: 41 init1: 41 opt: 90 Z-score: 91.4 bits: 24.8 E(): 6.8 Smith-Waterman score: 91; 27.160% identity (47.531% similar) in 162 aa overlap (38-184:82-221) 10 20 30 40 50 60 FLJ000 GVWDDASRHGGNGVARLWGWQDSPPVPALKRGGLCRTSGASVGGLLQTWGPAVSAATGLG :: ... :.. : : :.:: :. FLJ004 SATLSGVDLMKTEALVTVKANSSHAGNVNGRGCGTESGWAALKGAL--WAPAGPLPGPLA 60 70 80 90 100 70 80 90 100 110 FLJ000 PAPASQVVWRKPQ-------SLNQYPCPTPSLF---LASLGSGKGELSVPSLAPLCLHQP : : ::. ..:. .... : :: :: .:.:. :. .: : : : FLJ004 P-PLSQL--QRPRLGVPPGATVSSRP-PTGLLFPDDVATLSPGSW---LPC--PRCEHPT 110 120 130 140 150 160 120 130 140 150 160 170 FLJ000 GG--WAQACGGGEVATHLAVPALSQTALYSCSLGLFPNRVRLLGWAWLTWGSPLP---PQ . :. ::.: . : : :. . :: : . .. : .:. . : FLJ004 STERWGGQCGAGTRGLDL-YP---QAPI--CS---FADPDPFVCVIWGHFGGIFGRCGPG 170 180 190 200 210 180 190 200 210 220 230 FLJ000 WSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAEDVLNTQCGYDVRLKLEL : : :: . : FLJ004 WVC--ARDAGCWCHKR 220 349 residues in 1 query sequences 2210645 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:26:48 2009 done: Fri Feb 27 10:26:48 2009 Total Scan time: 0.470 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]