# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00013.fasta.huge -Q ../query/FLJ00013.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00013, 75 aa vs ./tmplib.10216 library 2210919 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.3941+/-0.00284; mu= 12.5611+/- 0.192 mean_var=47.8545+/-10.255, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.185401 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1846 ( 354 res) fg06344s1 ( 354) 312 90.3 4.3e-20 KIAA0112 ( 399 res) ha00609 ( 399) 66 24.6 3 KIAA2005 ( 1587 res) eg01633 (1587) 70 26.4 3.4 KIAA1729 ( 1020 res) pg00954 (1020) 67 25.3 4.5 KIAA1139 ( 1124 res) hk00330 (1124) 67 25.4 4.7 FLJ00050 ( 270 res) as00050 ( 270) 61 23.0 5.9 KIAA0026 ( 288 res) ha00640 ( 288) 61 23.0 6.1 KIAA0671 ( 537 res) hk02368 ( 537) 63 23.9 6.3 KIAA0615 ( 943 res) hg01354a ( 943) 64 24.5 7.4 FLJ00137 ( 1512 res) sh02727s1 (1512) 65 25.0 8.3 KIAA0391 ( 571 res) hj00118 ( 571) 61 23.4 9.4 KIAA0705 ( 1483 res) hg03359s1 (1483) 63 24.5 12 KIAA1246 ( 832 res) hh00149a ( 832) 61 23.6 12 KIAA0946 ( 667 res) hj04787 ( 667) 60 23.2 13 KIAA1161 ( 680 res) hj01210s1 ( 680) 60 23.2 13 KIAA0901 ( 1233 res) hk09716 (1233) 62 24.1 13 KIAA0856 ( 2237 res) bf00171 (2237) 64 24.9 13 KIAA0897 ( 419 res) hk09524 ( 419) 57 22.2 16 KIAA1958 ( 607 res) ha04850 ( 607) 58 22.6 17 FLJ00262 ( 1112 res) sj01172 (1112) 60 23.5 17 KIAA1160 ( 351 res) hj01067 ( 351) 56 21.8 18 FLJ00320 ( 267 res) sh07586 ( 267) 55 21.4 18 KIAA1495 ( 502 res) fj08986 ( 502) 57 22.3 18 KIAA1790 ( 1369 res) fh24104 (1369) 60 23.6 20 FLJ00395 ( 1105 res) sj06062 (1105) 59 23.2 21 KIAA1761 ( 837 res) ha03234 ( 837) 58 22.8 21 KIAA1256 ( 1676 res) hh15293 (1676) 60 23.7 22 KIAA0242 ( 529 res) ha03111(revised) ( 529) 56 22.0 23 KIAA1857 ( 549 res) fk03350 ( 549) 56 22.1 23 KIAA0700 ( 1137 res) fh14187 (1137) 58 23.0 25 KIAA0833 ( 1734 res) hg01719s1 (1734) 59 23.5 27 KIAA1817 ( 997 res) fj14474 ( 997) 57 22.6 28 KIAA0605 ( 1031 res) hg03238a (1031) 57 22.7 29 FLJ00252 ( 819 res) sj09394 ( 819) 56 22.3 30 FLJ00378 ( 855 res) sj00210 ( 855) 56 22.3 31 KIAA0465 ( 4433 res) hg01123s2 (4433) 61 24.5 34 FLJ00162 ( 449 res) sh06750 ( 449) 53 21.1 35 KIAA1768 ( 1207 res) ph00672(revised) (1207) 56 22.5 38 KIAA1542 ( 1654 res) hh03408 (1654) 57 22.9 38 KIAA0500 ( 213 res) hg00404 ( 213) 50 19.9 39 FLJ00032 ( 705 res) as00032 ( 705) 54 21.7 39 KIAA0918 ( 966 res) hk09360(revised) ( 966) 55 22.1 40 FLJ00110 ( 224 res) as00110 ( 224) 50 20.0 40 FLJ00044 ( 1051 res) as00044 (1051) 55 22.1 42 KIAA0851 ( 607 res) hk06032 ( 607) 53 21.3 43 FLJ00345 ( 339 res) sf00014 ( 339) 51 20.5 43 KIAA1450 ( 1139 res) fh12401b (1139) 55 22.2 44 KIAA0841 ( 641 res) hk04975 ( 641) 53 21.3 44 KIAA1239 ( 1164 res) fh23104 (1164) 55 22.2 44 KIAA1509 ( 1365 res) fh14721 (1365) 55 22.3 49 >>KIAA1846 ( 354 res) fg06344s1 (354 aa) initn: 309 init1: 309 opt: 312 Z-score: 454.1 bits: 90.3 E(): 4.3e-20 Smith-Waterman score: 312; 90.385% identity (96.154% similar) in 52 aa overlap (14-65:33-84) 10 20 30 40 FLJ000 TMSALLLTVNFGLSVGRYWETVERLKINQFYGAPTAVRLLLKY ..:::::::::::::::::::::::::::: KIAA18 GWITGHSYVVYGPLCNGATSVLFESTPVYPNAGRYWETVERLKINQFYGAPTAVRLLLKY 10 20 30 40 50 60 50 60 70 FLJ000 GDAWVKKYDRSSLRTLGSGERPALQQERLCLP :::::::::::::::::: .: KIAA18 GDAWVKKYDRSSLRTLGSVGEPINCEAWEWLHRVVGDSRCTLVDTWWQTETGGICIAPRP 70 80 90 100 110 120 >>KIAA0112 ( 399 res) ha00609 (399 aa) initn: 43 init1: 43 opt: 66 Z-score: 97.9 bits: 24.6 E(): 3 Smith-Waterman score: 66; 25.862% identity (55.172% similar) in 58 aa overlap (14-71:265-320) 10 20 30 40 FLJ000 TMSALLLTVNFGLSVGRYWETVERLKINQFYGAPTAVRLLLKY ::::. : . . :. . : . : . KIAA01 LPSAAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRKFQPL--F 240 250 260 270 280 290 50 60 70 FLJ000 GDAWVKKYDRSSLRTLGSGERPALQQERLCLP :: ..: .. : . ....: :. : KIAA01 GDFAAEKKNQLELLRVMNSKKPQLDVTRATNKQMREEDQEEAAKRRKMSQKGKRKGGRQG 300 310 320 330 340 350 >>KIAA2005 ( 1587 res) eg01633 (1587 aa) initn: 89 init1: 62 opt: 70 Z-score: 96.9 bits: 26.4 E(): 3.4 Smith-Waterman score: 70; 32.558% identity (62.791% similar) in 43 aa overlap (22-63:1491-1533) 10 20 30 40 50 FLJ000 TMSALLLTVNFGLSVGRYWETVERLKINQFYGAPTAVRLLLKYGDAWVKKY :.. ::.:.. . : . ::.: :. KIAA20 SFRGQYKRMCRSKQASTLFYLGKRKGLNSIVHKAKIEQYFDKAQNTNSLWHSGDVWKKNE 1470 1480 1490 1500 1510 1520 60 70 FLJ000 DRSSLRTL-GSGERPALQQERLCLP .. :: : :..: KIAA20 VKDLLRRLTGQAEGKLISVEYGTEEKIKIPVISVYSGPLRSGRNIERVSFYLGFSIEGPL 1530 1540 1550 1560 1570 1580 >>KIAA1729 ( 1020 res) pg00954 (1020 aa) initn: 69 init1: 44 opt: 67 Z-score: 94.7 bits: 25.3 E(): 4.5 Smith-Waterman score: 67; 28.571% identity (55.357% similar) in 56 aa overlap (20-74:404-459) 10 20 30 40 FLJ000 TMSALLLTVNFGLSVGRYWETVERL-KINQFYGAPTAVRLLLKYGDAWV ::.: . : :..: :: . : . . KIAA17 QLKNVKWVRSYDFIMPNSSVHNNGKSFINSETIEDFQKKNNLYPHRTAFPSVALKGHSLA 380 390 400 410 420 430 50 60 70 FLJ000 KKYDRSSLRTLGSGERPALQQERLCLP . . : ::.::.. : . .:. KIAA17 SVFKNSVLRSLGAASNPFPYKAAVCFAESGRNLHSNSQQLLPFAASPATCSFSGEKGLLP 440 450 460 470 480 490 >>KIAA1139 ( 1124 res) hk00330 (1124 aa) initn: 69 init1: 46 opt: 67 Z-score: 94.2 bits: 25.4 E(): 4.7 Smith-Waterman score: 67; 31.915% identity (65.957% similar) in 47 aa overlap (12-56:134-180) 10 20 30 40 FLJ000 TMSALLLTVNFGLSVGRYWETVERLKINQFYGAPTAVRLLL :. ..: .: :. .:: .::::: KIAA11 KDPCDPNYTTPLHLAAKNGHREVIRQLLRAGIEINRQTKTGTALHEAALYGKTEVVRLLL 110 120 130 140 150 160 50 60 70 FLJ000 KYG-DAWVKK-YDRSSLRTLGSGERPALQQERLCLP . : :. ... :....: KIAA11 EGGVDVNIRNTYNQTALDIVNQFTTSQASREIKQLLREASGILKVRALKDFWNLHDPTAL 170 180 190 200 210 220 >>FLJ00050 ( 270 res) as00050 (270 aa) initn: 70 init1: 45 opt: 61 Z-score: 92.6 bits: 23.0 E(): 5.9 Smith-Waterman score: 61; 29.167% identity (48.611% similar) in 72 aa overlap (13-75:98-168) 10 20 30 40 FLJ000 TMSALLLTVNFGLSVGRYWETVERLKINQFYGAPTAVRLLLK :: . :: :::. . ...: : FLJ000 LWDVLILEGEQVLTAMAHASFKIHREHLMKLSWSTVWEFQERLSQSWALEDNSVLRNLQT 70 80 90 100 110 120 50 60 70 FLJ000 YGDAWVKKY---------DRSSLRTLGSGERPALQQERLCLP .::. .:.: : .. : :: . .:: :: FLJ000 SMKELTKKHWDLPSPGELERGSSR-VSPGIRPLCEGDRLALPSPPAQLQGLMPSAPQDKS 130 140 150 160 170 180 FLJ000 LVLPQPGLTGLSPWRRPRPSSTKGLPQNPGQQAALWVAQRIKMWPPCFPVRSGLVLHKNT 190 200 210 220 230 240 >>KIAA0026 ( 288 res) ha00640 (288 aa) initn: 52 init1: 52 opt: 61 Z-score: 92.2 bits: 23.0 E(): 6.1 Smith-Waterman score: 61; 44.444% identity (77.778% similar) in 18 aa overlap (27-44:219-236) 10 20 30 40 50 FLJ000 TMSALLLTVNFGLSVGRYWETVERLKINQFYGAPTAVRLLLKYGDAWVKKYDRSSL ..: :::: .::... : KIAA00 YFNVMLGTQLLYKFERPQYAEILLAHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKS 190 200 210 220 230 240 60 70 FLJ000 RTLGSGERPALQQERLCLP KIAA00 LALLLGYLHDFLKYLAKNSASLFTASDYKVASAEYHRKAL 250 260 270 280 >>KIAA0671 ( 537 res) hk02368 (537 aa) initn: 49 init1: 49 opt: 63 Z-score: 92.1 bits: 23.9 E(): 6.3 Smith-Waterman score: 63; 41.667% identity (63.889% similar) in 36 aa overlap (42-75:156-191) 20 30 40 50 60 70 FLJ000 GLSVGRYWETVERLKINQFYGAPTAVRLLLKYGDAWVKKYDRSSLRTLGS-GERPALQQE .:: . :. .: : ::.:: . : ::. KIAA06 KHSCSTKTQSSLDADKKFGRTRSGLQRRERRYGVSSVHDMDSVSSRTVGSRSLRQRLQDT 130 140 150 160 170 180 FLJ000 R-LCLP ::.: KIAA06 VGLCFPMRTYSKQSKPLFSNKRKIHLSELMLEKCPFPAGSDLAQKWHLIKQHTAPVSPHS 190 200 210 220 230 240 >>KIAA0615 ( 943 res) hg01354a (943 aa) initn: 41 init1: 41 opt: 64 Z-score: 90.8 bits: 24.5 E(): 7.4 Smith-Waterman score: 64; 29.091% identity (54.545% similar) in 55 aa overlap (7-61:396-448) 10 20 30 FLJ000 TMSALLLTVNFGLSVGRYWETVERLKINQFYGAPTA . ::: ..: : :: :. . :: : KIAA06 NVIADLSDSSADSENLSPDIKETTEEMEYNILVNFFKTMGYSQEIVE--KVIKVYGPSTE 370 380 390 400 410 420 40 50 60 70 FLJ000 VRLLLKYGDAWVKKYDRSSLRTLGSGERPALQQERLCLP :::. . :..... . :. KIAA06 PLLLLEEIEKENKRFQEDREFSAGTVYPETNKTKNKGVYSSTNELTTDSTPKKTQAHTQQ 430 440 450 460 470 480 >>FLJ00137 ( 1512 res) sh02727s1 (1512 aa) initn: 86 init1: 62 opt: 65 Z-score: 89.9 bits: 25.0 E(): 8.3 Smith-Waterman score: 65; 44.000% identity (68.000% similar) in 25 aa overlap (13-37:990-1014) 10 20 30 40 FLJ000 TMSALLLTVNFGLSVGRYWETVERLKINQFYGAPTAVRLLLK ::. . .:.:: :: :.:: :. FLJ001 AGYHVWLWAVEAFAKQLCFQDQYVKAASHLLSIHKVYEAVELLKSNHFYREAIAIAKARL 960 970 980 990 1000 1010 50 60 70 FLJ000 YGDAWVKKYDRSSLRTLGSGERPALQQERLCLP FLJ001 RPEDPVLKDLYLSWGTVLERDGHYAVAAKCYLGATCAYDAAKVLAKKGDAASLRTAAELA 1020 1030 1040 1050 1060 1070 75 residues in 1 query sequences 2210919 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:26:45 2009 done: Fri Feb 27 10:26:45 2009 Total Scan time: 0.270 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]