hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna/full/aisin/as00007/interpro/cnk_1/seq.in
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Query:  as00007  701

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3      Src homology 3 domains                         107.0    2.2e-27   2
FCH      Fes/CIP4 homology domain                        49.0    6.2e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FCH        1/1      27   118 ..     1   103 []    49.0  6.2e-10
SH3        1/2     482   539 ..     1    58 []    45.5  7.3e-09
SH3        2/2     560   619 ..     1    58 []    62.5  5.3e-14

Alignments of top-scoring domains:
FCH: domain 1 of 1, from 27 to 118: score 49.0, E = 6.2e-10
                   *->mgfwselwsddGfeaLlsrlknglrlledlkkflreRakiEeeYAkk
                      + f ++l        L  +++ ++ lled++++ ++Ra+iE+eY++ 
     as00007    27    LRFLEQL------SILQTWQQREADLLEDIRSYSKQRAAIEREYGQA 67   

                   Lqklskkyfnkkssvgdlravreteselgslkkswevllsetdalakshl
                   Lqkl+  +++++     ++++ e++s   ++  +w+ ll+ t a ++++l
     as00007    68 LQKLAGPFLKRE-----GHRSGEMDSRGRTVFGAWRCLLDATVAGGQTRL 112  

                   qlsedL<-*
                   q s+ +   
     as00007   113 QASDRY    118  

SH3: domain 1 of 2, from 482 to 539: score 45.5, E = 7.3e-09
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks.ddgWweGelnrtGke
                      + + +++ y+a  edEL++++G+ ++v+e+ + d+W +++++  G++
     as00007   482    CPAHVVFRYQAGREDELTITEGEWLEVIEEGdADEWVKARNQ-HGEV 527  

                   GlfPsnYVeeie<-*
                   G++P  Y+   +   
     as00007   528 GFVPERYLNFPD    539  

SH3: domain 2 of 2, from 560 to 619: score 62.5, E = 5.3e-14
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks....ddgWweGelnrt
                      + ++AlY+y++q+++ELsF +G  i++l + +++ ddg w+Ge +  
     as00007   560    FLAQALYSYTGQSAEELSFPEGALIRLLPRAqdgvDDGFWRGEFG-- 604  

                   GkeGlfPsnYVeeie<-*
                   G++G fPs  Vee+    
     as00007   605 GRVGVFPSLLVEELL    619  

//