hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna/full/aisin/as00007/interpro/cnk_1/seq.in
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Query:  as00007  701

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3_1    SH3 domain                                      67.1    3.9e-16   2
SH3_2    Variant SH3 domain                              65.9    8.8e-16   2
FCH      Fes/CIP4 homology domain                        42.3    1.1e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FCH        1/1      27   118 ..     1   107 []    42.3  1.1e-08
SH3_2      1/2     483   537 ..     1    69 []    28.2  0.00019
SH3_1      1/2     482   538 ..     1    58 []    29.0  0.00011
SH3_1      2/2     560   618 ..     1    58 []    38.1    2e-07
SH3_2      2/2     561   618 ..     1    69 []    37.7  2.7e-07

Alignments of top-scoring domains:
FCH: domain 1 of 1, from 27 to 118: score 42.3, E = 1.1e-08
                   *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk
                        F+++l       +L+ +++ + +lled++++ ++Ra+iE+eY++ 
     as00007    27    LRFLEQL------SILQTWQQREADLLEDIRSYSKQRAAIEREYGQA 67   

                   LqklskkyfnkkRkSdgsvskgsltekgpdslsslkkawnvllsetdqls
                   Lqkl+  +++++         g++  ++ + + ++  aw+ ll+ t + +
     as00007    68 LQKLAGPFLKRE---------GHRSGEMDSRGRTVFGAWRCLLDATVAGG 108  

                   klHsqlseqL<-*
                   ++++q s+ +   
     as00007   109 QTRLQASDRY    118  

SH3_2: domain 1 of 2, from 483 to 537: score 28.2, E = 0.00019
                   *->yvrairdyvaAtdenenleeeLslkkGdvvkVldvggskdddgwwlg
                      ++ +++ y a  +e+e     L++++G+ ++V+   ++ d d+w  +
     as00007   483    PAHVVFRYQA-GREDE-----LTITEGEWLEVI---EEGDADEWVKA 520  

                   es.geEmaGrrmGlvPssaveel<-*
                   ++++    G++ G+vP  ++ +    
     as00007   521 RNqH----GEV-GFVPERYL-NF    537  

SH3_1: domain 1 of 2, from 482 to 538: score 29.0, E = 0.00011
                   *->kkvvALYDYearesdELsFkkGDvitvleksdd.gWWkgrlkgtgGk
                        + + + Y+a  +dEL++++G+ ++v+e+ d+++W k+r++   G+
     as00007   482    CPAHVVFRYQAGREDELTITEGEWLEVIEEGDAdEWVKARNQH--GE 526  

                   eGliPsNYVepv<-*
                   +G++P  Y+      
     as00007   527 VGFVPERYLNFP    538  

SH3_1: domain 2 of 2, from 560 to 618: score 38.1, E = 2e-07
                   *->kkvvALYDYearesdELsFkkGDvitvleksdd....gWWkgrlkgt
                        ++ALY Y++++++ELsF +G  i +l +  d+ ++g W+g+    
     as00007   560    FLAQALYSYTGQSAEELSFPEGALIRLLPRAQDgvddGFWRGEFG-- 604  

                   gGkeGliPsNYVepv<-*
                    G++G +Ps  Ve+    
     as00007   605 -GRVGVFPSLLVEEL    618  

SH3_2: domain 2 of 2, from 561 to 618: score 37.7, E = 2.7e-07
                   *->yvrairdyvaAtdenenleeeLslkkGdvvkVldvggskddd....g
                      +++a+ +y++ +++ e     Ls+ +G ++++l     + +d+ ++g
     as00007   561    LAQALYSYTG-QSAEE-----LSFPEGALIRLL----PRAQDgvddG 597  

                   wwlgesgeEmaGrrmGlvPssaveel<-*
                   +w+ge g    Gr+ G++Ps +veel   
     as00007   598 FWRGEFG----GRV-GVFPSLLVEEL    618  

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