# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00005.fasta.huge -Q ../query/FLJ00005.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00005, 111 aa vs ./tmplib.10216 library 2210883 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.3298+/-0.00525; mu= 11.5832+/- 0.355 mean_var=160.2650+/-35.787, 0's: 0 Z-trim: 0 B-trim: 155 in 1/39 Lambda= 0.101311 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1538 ( 1029 res) fg06773 (1029) 115 27.3 1.6 KIAA1668 ( 791 res) fh11717 ( 791) 108 26.1 2.9 KIAA1139 ( 1124 res) hk00330 (1124) 109 26.5 3.2 KIAA1196 ( 851 res) fg01776 ( 851) 104 25.6 4.5 FLJ00361 ( 366 res) sh04352 ( 366) 98 24.2 5.3 KIAA0665 ( 760 res) hk02064 ( 760) 101 25.1 5.8 KIAA0616 ( 634 res) hg03623 ( 634) 97 24.4 7.8 KIAA0149 ( 830 res) ha01221 ( 830) 95 24.3 11 KIAA2001 ( 689 res) bj00176 ( 689) 90 23.4 17 KIAA0599 ( 697 res) hj03137 ( 697) 90 23.4 17 KIAA0575 ( 952 res) hj00216 ( 952) 91 23.8 18 FLJ00242 ( 804 res) sj07550 ( 804) 90 23.5 18 KIAA1940 ( 821 res) ah04227 ( 821) 90 23.5 18 KIAA1688 ( 1094 res) fh26207 (1094) 91 23.9 19 KIAA1983 ( 418 res) fk09737(revised) ( 418) 85 22.4 21 FLJ00084 ( 641 res) as00084 ( 641) 87 22.9 22 FLJ00222 ( 656 res) sj06165 ( 656) 87 23.0 22 FLJ00417 ( 600 res) sj06336 ( 600) 86 22.7 23 KIAA0434 ( 1571 res) hh02165 (1571) 91 24.1 24 FLJ00169 ( 432 res) sh07709 ( 432) 84 22.2 24 KIAA1870 ( 832 res) hh05136b ( 832) 87 23.1 25 KIAA1866 ( 1783 res) pf09734 (1783) 91 24.2 25 KIAA1855 ( 1270 res) fg04654 (1270) 89 23.7 26 FLJ00248 ( 501 res) sj08681 ( 501) 84 22.3 26 FLJ00141 ( 1326 res) sh04092 (1326) 89 23.7 26 KIAA0638 ( 1384 res) hj03347s1 (1384) 89 23.7 27 FLJ00149 ( 792 res) sh05462 ( 792) 86 22.9 27 KIAA0945 ( 797 res) hj04760 ( 797) 86 22.9 27 KIAA0450 ( 1182 res) hj05822 (1182) 88 23.5 27 FLJ00355 ( 469 res) sh02302 ( 469) 83 22.1 27 KIAA0855 ( 632 res) hk06219 ( 632) 84 22.5 29 FLJ00414 ( 1129 res) sg00016 (1129) 87 23.3 29 KIAA1581 ( 545 res) fj05690 ( 545) 83 22.2 30 KIAA0170 ( 2090 res) ha02399 (2090) 90 24.2 30 KIAA1292 ( 595 res) hk05468(revised) ( 595) 83 22.3 31 FLJ00155 ( 612 res) sh06465 ( 612) 83 22.3 32 FLJ00294 ( 681 res) sh03769 ( 681) 83 22.4 33 KIAA1737 ( 400 res) pj00125 ( 400) 80 21.6 34 KIAA1522 ( 1044 res) fh14706(revised) (1044) 85 23.0 34 KIAA1295 ( 550 res) fg01760 ( 550) 81 22.0 36 KIAA1813 ( 673 res) ph00819b ( 673) 82 22.2 37 KIAA1957 ( 481 res) fk12643 ( 481) 80 21.7 38 KIAA0293 ( 1505 res) hg03205 (1505) 86 23.4 38 KIAA1511 ( 1253 res) fg04486(revised) (1253) 85 23.1 38 KIAA1811 ( 715 res) ha06731 ( 715) 82 22.3 38 KIAA1282 ( 1117 res) hh04440b(revised) (1117) 84 22.9 39 KIAA0435 ( 787 res) hh02241 ( 787) 82 22.3 40 FLJ00269 ( 1383 res) sj06049 (1383) 85 23.2 40 KIAA0689 ( 547 res) hk03417 ( 547) 80 21.8 40 KIAA1029 ( 1015 res) fh00363 (1015) 83 22.7 41 >>KIAA1538 ( 1029 res) fg06773 (1029 aa) initn: 121 init1: 81 opt: 115 Z-score: 102.5 bits: 27.3 E(): 1.6 Smith-Waterman score: 115; 28.283% identity (50.505% similar) in 99 aa overlap (13-109:527-619) 10 20 30 40 FLJ000 TAEPSGRALRLSTPGPRPSGARDRAPGAAGPPSGQIGNRALR : ::: :. : :: .. . KIAA15 VIVHGGSSSGGGGSGTASTGGSQAASVITYTAPPRPPKKREYPP----PPPEPAATPTSP 500 510 520 530 540 550 50 60 70 80 90 100 FLJ000 LGERTPAAVEKRGPYMVTRAPSIQAKLQKHRDLAKAVLRRKGMLGASPNRPDSSGKR-SQ .::.. :: :.: . ... . . . : .:.. . : ..:. :: KIAA15 ATAVSPATAA--GPAMATTTEEAKGRNPRAGRTLTYTAKPVGGIGGGGGPPTGAGRGPSQ 560 570 580 590 600 610 110 FLJ000 -QAPPPLCQQL :::::::: KIAA15 LQAPPPLCQITVRIGEEAIVKRRISETDLRPGELSGEEMEESEEDEEEEDEEEEEEDEEE 620 630 640 650 660 670 >>KIAA1668 ( 791 res) fh11717 (791 aa) initn: 88 init1: 53 opt: 108 Z-score: 98.1 bits: 26.1 E(): 2.9 Smith-Waterman score: 108; 22.917% identity (53.125% similar) in 96 aa overlap (3-97:496-591) 10 20 30 FLJ000 TAEPSGRALRLSTPGPRPSGARDRAPGAAGPP :: . . ..:: : . .: : : KIAA16 SEPAVHAPGTPGNPVSLSTNSSLASSGELVEPRVEQMPQASPGLAPRTRGSSGPQPAKPC 470 480 490 500 510 520 40 50 60 70 80 90 FLJ000 SGQIGNRALRLGERTPAAVE-KRGPYMVTRAPSIQAKLQKHRDLAKAVLRRKGMLGASPN :: . : .:.:.:. . .: . ... . .... . : . .:. :..: KIAA16 SGATPTPLLLVGDRSPVPSPGSSSPQLQVKSSCKENPFNRKPSPAASPATKKATKGSKPV 530 540 550 560 570 580 100 110 FLJ000 RPDSSGKRSQQAPPPLCQQL :: . : KIAA16 RPPAPGHGFPLIKRKVQADQYIPEEDIHGEMDTIERRLDALEHRGVLLEEKLRGGLNEGR 590 600 610 620 630 640 >>KIAA1139 ( 1124 res) hk00330 (1124 aa) initn: 96 init1: 57 opt: 109 Z-score: 97.4 bits: 26.5 E(): 3.2 Smith-Waterman score: 109; 28.846% identity (54.808% similar) in 104 aa overlap (4-107:716-811) 10 20 30 FLJ000 TAEPSGRALRLSTPGPRPSGARDRAPGAAGPPS :. :. :: ::: . :. .: : .: KIAA11 SSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPTEGDAEGEAEGPVGSTL 690 700 710 720 730 740 40 50 60 70 80 90 FLJ000 GQIGNRALRLGERTPAAVEKRGPYMVTRAPSIQAKLQKHRDLAKAVLRRKGMLGASPNRP :. .. . : :. .:. . .: . .:. . ...: . :::: :.: KIAA11 GSYATLTRRPGR---SALVRTSPSV---TPTPARGTPRSQSFALRA-RRKGPPPPPPKRL 750 760 770 780 790 100 110 FLJ000 DSSGKRSQQAPPPLCQQL .: . : . :::: KIAA11 SSVSGPSPE-PPPLDGSPGPKEGATGPRRRTLSEPAGPSEPPGPPAPAGPASDTEEEEPG 800 810 820 830 840 850 >>KIAA1196 ( 851 res) fg01776 (851 aa) initn: 75 init1: 49 opt: 104 Z-score: 94.6 bits: 25.6 E(): 4.5 Smith-Waterman score: 104; 28.431% identity (52.941% similar) in 102 aa overlap (13-107:349-447) 10 20 30 40 FLJ000 TAEPSGRALRLSTPGPRPSGARD--RAPGAAGPPSGQIGNRA .:: ::::. . .: : :.:: . KIAA11 ARPENGEYGPSSMGQSSAFQLSADTSSGSLSPGSRPSGGMEALKAAGPASPPEEDPERTK 320 330 340 350 360 370 50 60 70 80 90 FLJ000 LRLGERTPAAVEKRGPYMVTRAPSIQAKLQKHRDLAKAVLRRKGMLGASPNR-----PDS : ..:: . : .. . .... : : .: :. : : : . : .:. : . KIAA11 HRRKQKTPKKFTGEQPS-ISGTFGLKG-LVKAEDKAR-VHRSKKQEGPGPEDARKKVPAA 380 390 400 410 420 430 100 110 FLJ000 SGKRSQQAPPPLCQQL :..:: :. KIAA11 PITVSKEAPAPVAHPAPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKL 440 450 460 470 480 490 >>FLJ00361 ( 366 res) sh04352 (366 aa) initn: 134 init1: 59 opt: 98 Z-score: 93.4 bits: 24.2 E(): 5.3 Smith-Waterman score: 107; 33.065% identity (51.613% similar) in 124 aa overlap (2-106:166-280) 10 20 FLJ000 TAEPSGRALRLSTPGP-RPS------GARDR :.: . : ..::: ::. : . : FLJ003 PAWRGRRGAAATESPGRFRRSPGGPPGTICAQPPAGA---GVPGPGRPARELLSVGLQRR 140 150 160 170 180 190 30 40 50 60 70 FLJ000 --APGAAGP-----PSGQIGNRALRLGERTPAAVEKRGPYMVTRA--PSIQAKLQKHRDL :::::.: : . : :: ::: : ::. . :. .. :: : ..:. .: FLJ003 PGAPGAASPGPRLQPHAPTG-RA-RLGVRGPAGCQARSASVARRANSPRATSRLRPGLQL 200 210 220 230 240 250 80 90 100 110 FLJ000 A-KAVLRRKGMLGA--SPNRPDSSGKRSQQAPPPLCQQL .. : . . : :: :: . . : :: FLJ003 QPRGEHRPRDLHGDLLSPRRPPD----DPWARPPRSDRFPGRSVWAEPAWGDGATGGLSV 260 270 280 290 300 FLJ003 YATEDDEGDARARARIALYSVFPRDQVDRVMAAFPELSDLARLILLVQRCQSAGAPLGKP 310 320 330 340 350 360 >>KIAA0665 ( 760 res) hk02064 (760 aa) initn: 55 init1: 55 opt: 101 Z-score: 92.7 bits: 25.1 E(): 5.8 Smith-Waterman score: 101; 29.592% identity (50.000% similar) in 98 aa overlap (12-105:12-107) 10 20 30 40 50 FLJ000 TAEPSGRALRLSTPGPRPSGARDRAPGAAGPPSGQI--GNRALRLGERTPAA-VEKRGPY : :: .: : . : :: ..:. : :::: .:.. . ..: KIAA06 PLGSMASAPPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLG--APVGGPDPQSPG 10 20 30 40 50 60 70 80 90 100 110 FLJ000 MVTRAPSIQAKLQKHRDLAKAVLRRKGMLGASPNRPDS-SGKRSQQAPPPLCQQL . ::. : . . . : . : .:. : :: :.: : : KIAA06 LDEPAPGAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPRSEA 60 70 80 90 100 110 KIAA06 PLPELDPLFSWTEEPEECGPASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTAGELAL 120 130 140 150 160 170 >>KIAA0616 ( 634 res) hg03623 (634 aa) initn: 107 init1: 80 opt: 97 Z-score: 90.3 bits: 24.4 E(): 7.8 Smith-Waterman score: 97; 27.473% identity (53.846% similar) in 91 aa overlap (21-103:40-128) 10 20 30 40 FLJ000 TAEPSGRALRLSTPGPRPSGARDRAPGAAGPPSGQIGNRALRL------- .: . :.. : .:::. .. : KIAA06 AAFEEVMKDLSLTRAARLQLQKSQYLQLGPSRGQYYGGSLPNVNQIGSGTMDLPFQPSGF 10 20 30 40 50 60 50 60 70 80 90 100 FLJ000 -GERTPAAVEKRGPYMVTRAPSIQAKLQKHRDLAKAVLRRKGMLGASPNRPDSSGKRSQQ :: :: . :.. . . .. .:. :. : :..: ::. :: : :...: KIAA06 LGEALAAAPVSLTPFQSSGLDT--SRTTRHHGLVDRVYRERGRLGSPHRRPLSVDKHGRQ 70 80 90 100 110 120 110 FLJ000 APPPLCQQL : KIAA06 ADSCPYGTMYLSPPADTSWRRTNSDSALHQSTMTPTQPESFSSGSQDVHQKRVLLLTVPG 130 140 150 160 170 180 >>KIAA0149 ( 830 res) ha01221 (830 aa) initn: 99 init1: 71 opt: 95 Z-score: 87.6 bits: 24.3 E(): 11 Smith-Waterman score: 99; 29.730% identity (54.054% similar) in 111 aa overlap (4-105:627-732) 10 20 30 FLJ000 TAEPSGRALRLSTPGPRPSGARDRAPGAAGPPS : :: . :: :: . : . :.::.: . KIAA01 KFAPQSRRSSGELSSPLRKPKRLSRGAQSGPEGREAEEST-GPDEAEAPESFPAAASPGD 600 610 620 630 640 650 40 50 60 70 80 FLJ000 GQIGNRALRLGERTPA----AVE-----KRGPYMVTRAPSIQAKLQKHRDLAKAVLRRKG . :.: :: :: : :.: . :: :: . .: . . ...:.:. : KIAA01 SATGHRWPPLGSRTVAEHVEAIEGSVQESSGP--VTTIYMLAGKPRGSEGPVRSVFRHFG 660 670 680 690 700 710 90 100 110 FLJ000 MLGASPNRPDSSGKRSQQAPPPLCQQL . . .. ... ::. :: KIAA01 SF--QKGQAEAKVKRAIPKPPRQALNRKKGSPGLASGSVGQSPNSAPKAGLPGATGPMAV 720 730 740 750 760 770 >>KIAA2001 ( 689 res) bj00176 (689 aa) initn: 76 init1: 54 opt: 90 Z-score: 84.4 bits: 23.4 E(): 17 Smith-Waterman score: 91; 33.333% identity (48.485% similar) in 99 aa overlap (7-104:28-116) 10 20 30 FLJ000 TAEPSGRALRLSTPGPRPSGARDRAPGAAGPPSGQIGNR : :::. ::: : : . .:: : . : KIAA20 RSPLPPAPLAPARPPARSRGRRRHRVARILRLAPPGPVPPPALS-GPGDEVTRPGP-SRR 10 20 30 40 50 40 50 60 70 80 90 FLJ000 ALRLGERTPAAVEKRGPYMVTRAPSIQAKLQKHRDLAKAVLRRKGMLGASPNRP-DSSGK ::: .: :.. . : . .::: : ..: . :.: : : : KIAA20 ALRPERRPPSSPRWVWPGL-SRAP------LPHFGPSRAPPPHFGLL-RPPVAPVPLSPP 60 70 80 90 100 110 100 110 FLJ000 RSQQAPPPLCQQL :: .:: KIAA20 RSPRAPGLVEMSEASGNLNSLRMANVALREELNALRGENANLGLQLGRALAEVNSLRGNV 120 130 140 150 160 170 >>KIAA0599 ( 697 res) hj03137 (697 aa) initn: 59 init1: 59 opt: 90 Z-score: 84.4 bits: 23.4 E(): 17 Smith-Waterman score: 90; 27.523% identity (55.046% similar) in 109 aa overlap (4-109:497-599) 10 20 30 FLJ000 TAEPSGRALRLSTPGPRPSGARDRAPGA--AGP ::. . : ..:: :::. .: . : KIAA05 FDYEQLMAQEHSPPKPSSAGEMSPQRFFFNPSAVSQRTTSPGGRPSARSPLSPTETFSWP 470 480 490 500 510 520 40 50 60 70 80 90 FLJ000 PSGQIGNR-ALRLGERTPAAVEKRGPYMVTRAPSIQAKLQKHRDLAKAVLRRKGMLGASP .. .. : : : .. . ::: :.:. :. .. . :. : : ... : KIAA05 DVRELCSKYASRDEARRAGGGRPRGPP-VNRSHSVPENMVEP-PLSGRVGRCRSL---ST 530 540 550 560 570 580 100 110 FLJ000 NRPDSSGKRSQQAPPPLCQQL .: ..:. . :.: :: : KIAA05 KRGRGGGE-AAQSPGPLPQSKPDGGETLYVTADLTLEDNRRVIVMEKGPLPSPTAGLEES 590 600 610 620 630 640 111 residues in 1 query sequences 2210883 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:26:02 2009 done: Fri Feb 27 10:26:02 2009 Total Scan time: 0.300 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]