# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00003.fasta.nr -Q ../query/FLJ00003.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00003, 235 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826234 sequences Expectation_n fit: rho(ln(x))= 5.2548+/-0.000189; mu= 8.6577+/- 0.011 mean_var=81.5288+/-15.991, 0's: 32 Z-trim: 35 B-trim: 770 in 1/67 Lambda= 0.142043 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|7209307|dbj|BAA92228.1| FLJ00003 protein [Homo ( 235) 1646 346.2 2.6e-93 gi|50949499|emb|CAH10623.1| hypothetical protein [ ( 277) 558 123.3 3.8e-26 gi|14043091|gb|AAH07529.1| MED15 protein [Homo sap ( 384) 558 123.5 4.8e-26 gi|193784960|dbj|BAG54113.1| unnamed protein produ ( 404) 558 123.5 5e-26 gi|50949442|emb|CAH10580.1| hypothetical protein [ ( 404) 558 123.5 5e-26 gi|119623354|gb|EAX02949.1| PC2 (positive cofactor ( 456) 558 123.5 5.5e-26 gi|117938842|gb|AAH03221.1| Med15 protein [Mus mus ( 310) 555 122.8 6.3e-26 gi|119623355|gb|EAX02950.1| PC2 (positive cofactor ( 667) 558 123.7 7.3e-26 gi|47678605|emb|CAG30423.1| PCQAP [Homo sapiens] ( 674) 558 123.7 7.3e-26 gi|119623353|gb|EAX02948.1| PC2 (positive cofactor ( 677) 558 123.7 7.4e-26 gi|193784871|dbj|BAG54024.1| unnamed protein produ ( 404) 555 122.9 7.7e-26 gi|194377598|dbj|BAG57747.1| unnamed protein produ ( 718) 558 123.7 7.7e-26 gi|119623358|gb|EAX02953.1| PC2 (positive cofactor ( 722) 558 123.7 7.7e-26 gi|14276857|gb|AAK58423.1|AF328769_1 PC2-glutamine ( 746) 558 123.7 7.9e-26 gi|15559260|gb|AAH13985.1| Mediator complex subuni ( 748) 558 123.7 7.9e-26 gi|45708378|gb|AAH03078.1| MED15 protein [Homo sap ( 767) 558 123.7 8.1e-26 gi|27734440|sp|Q96RN5.2|MED15_HUMAN RecName: Full= ( 788) 558 123.7 8.3e-26 gi|21748618|dbj|BAC03446.1| FLJ00386 protein [Homo ( 811) 558 123.7 8.4e-26 gi|109093354|ref|XP_001084461.1| PREDICTED: simila ( 858) 558 123.8 8.8e-26 gi|194043420|ref|XP_001927322.1| PREDICTED: simila ( 747) 557 123.5 9.1e-26 gi|194213957|ref|XP_001488170.2| PREDICTED: simila ( 748) 557 123.5 9.2e-26 gi|73995885|ref|XP_849892.1| PREDICTED: similar to ( 749) 557 123.5 9.2e-26 gi|114685221|ref|XP_525528.2| PREDICTED: similar t ( 947) 558 123.8 9.5e-26 gi|74151422|dbj|BAE38826.1| unnamed protein produc ( 639) 555 123.0 1.1e-25 gi|29612457|gb|AAH49891.1| Med15 protein [Mus musc ( 651) 555 123.0 1.1e-25 gi|32451779|gb|AAH54779.1| Mediator complex subuni ( 749) 555 123.1 1.2e-25 gi|100817039|ref|NP_001035773.1| mediator complex ( 749) 555 123.1 1.2e-25 gi|47847528|dbj|BAD21436.1| mFLJ00386 protein [Mus ( 769) 555 123.1 1.2e-25 gi|148665060|gb|EDK97476.1| positive cofactor 2, m ( 789) 555 123.1 1.3e-25 gi|20177999|sp|Q924H2.2|MED15_MOUSE RecName: Full= ( 792) 555 123.1 1.3e-25 gi|149019754|gb|EDL77902.1| positive cofactor 2, m ( 790) 554 122.9 1.5e-25 gi|221040200|dbj|BAH11863.1| unnamed protein produ ( 722) 552 122.5 1.8e-25 gi|148743887|gb|AAI42513.1| MED15 protein [Bos tau ( 711) 546 121.2 4.2e-25 gi|126325142|ref|XP_001376424.1| PREDICTED: simila ( 805) 473 106.3 1.5e-20 gi|21956190|gb|AAM83255.1|AF378334_1 ARC105 [Xenop ( 754) 455 102.6 1.8e-19 gi|82185335|sp|Q6NS15.1|MED15_XENLA RecName: Full= ( 777) 455 102.6 1.8e-19 gi|28374176|gb|AAH46263.1| LOC398566 protein [Xeno ( 846) 455 102.6 2e-19 gi|166203452|gb|ABY84679.1| mediator complex subun ( 792) 454 102.4 2.2e-19 gi|166203454|gb|ABY84680.1| mediator complex subun ( 794) 454 102.4 2.2e-19 gi|182890882|gb|AAI65669.1| Med15 protein [Danio r ( 809) 442 100.0 1.2e-18 gi|118098691|ref|XP_415235.2| PREDICTED: similar t ( 821) 439 99.4 1.9e-18 gi|82188674|sp|Q7ZVN7.1|MED15_DANRE RecName: Full= ( 809) 436 98.7 2.8e-18 gi|190617973|gb|EDV33497.1| GF20664 [Drosophila an ( 751) 292 69.2 2e-09 gi|194123360|gb|EDW45403.1| GM16747 [Drosophila se ( 690) 290 68.8 2.5e-09 gi|194189656|gb|EDX03232.1| GD23029 [Drosophila si ( 749) 290 68.8 2.7e-09 gi|74872931|sp|Q9Y149.1|MED15_DROME RecName: Full= ( 749) 288 68.4 3.6e-09 gi|193914227|gb|EDW13094.1| GI21723 [Drosophila mo ( 488) 284 67.4 4.6e-09 gi|194173536|gb|EDW87147.1| GE16869 [Drosophila ya ( 750) 283 67.4 7.3e-09 gi|190660045|gb|EDV57237.1| GG24724 [Drosophila er ( 750) 282 67.1 8.5e-09 gi|194149296|gb|EDW64994.1| GJ17780 [Drosophila vi ( 880) 279 66.6 1.5e-08 >>gi|7209307|dbj|BAA92228.1| FLJ00003 protein [Homo sapi (235 aa) initn: 1646 init1: 1646 opt: 1646 Z-score: 1831.6 bits: 346.2 E(): 2.6e-93 Smith-Waterman score: 1646; 100.000% identity (100.000% similar) in 235 aa overlap (1-235:1-235) 10 20 30 40 50 60 FLJ000 SASWVSVQRAGTGVGKQALTAAPGLCHPSQMAQRPEPTLCSRPARLSALSSHTPGSRQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|720 SASWVSVQRAGTGVGKQALTAAPGLCHPSQMAQRPEPTLCSRPARLSALSSHTPGSRQPG 10 20 30 40 50 60 70 80 90 100 110 120 FLJ000 HASVPTARARTLSPPQHRCGFACLGPREVVGRTSGHPSMQSTPGFTFGNLRVRETSSRLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|720 HASVPTARARTLSPPQHRCGFACLGPREVVGRTSGHPSMQSTPGFTFGNLRVRETSSRLC 70 80 90 100 110 120 130 140 150 160 170 180 FLJ000 HKLHQNLPGCGVLFQSRAVRQGRPGLVQVTDRAFCVADDKDLPSVPPLELSVPADYPAQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|720 HKLHQNLPGCGVLFQSRAVRQGRPGLVQVTDRAFCVADDKDLPSVPPLELSVPADYPAQS 130 140 150 160 170 180 190 200 210 220 230 FLJ000 PLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|720 PLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA 190 200 210 220 230 >>gi|50949499|emb|CAH10623.1| hypothetical protein [Homo (277 aa) initn: 577 init1: 550 opt: 558 Z-score: 625.7 bits: 123.3 E(): 3.8e-26 Smith-Waterman score: 559; 62.162% identity (74.324% similar) in 148 aa overlap (97-235:133-277) 70 80 90 100 110 120 FLJ000 ARARTLSPPQHRCGFACLGPREVVGRTSGHPSMQSTPGFTFGNLRVRETSSRLCHKLHQN :.: . : . : . :: .:. gi|509 QQYLCQPLLDAVLANIRSPVFNHSLYRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQS 110 120 130 140 150 160 130 140 150 160 170 FLJ000 LPGCGVLFQSRAVRQGRPGLVQV---------TDRAFCVADDKDLPSVPPLELSVPADYP .:. ..:....: ::.. : . .: :::::::::::::::::::: gi|509 IPS---VLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYP 170 180 190 200 210 180 190 200 210 220 230 FLJ000 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|509 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA 220 230 240 250 260 270 >>gi|14043091|gb|AAH07529.1| MED15 protein [Homo sapiens (384 aa) initn: 588 init1: 550 opt: 558 Z-score: 623.8 bits: 123.5 E(): 4.8e-26 Smith-Waterman score: 559; 62.162% identity (74.324% similar) in 148 aa overlap (97-235:240-384) 70 80 90 100 110 120 FLJ000 ARARTLSPPQHRCGFACLGPREVVGRTSGHPSMQSTPGFTFGNLRVRETSSRLCHKLHQN :.: . : . : . :: .:. gi|140 QQYLCQPLLDAVLANIRSPVFNHSLYRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQS 210 220 230 240 250 260 130 140 150 160 170 FLJ000 LPGCGVLFQSRAVRQGRPGLVQV---------TDRAFCVADDKDLPSVPPLELSVPADYP .:. ..:....: ::.. : . .: :::::::::::::::::::: gi|140 IPS---VLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYP 270 280 290 300 310 320 180 190 200 210 220 230 FLJ000 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|140 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA 330 340 350 360 370 380 >>gi|193784960|dbj|BAG54113.1| unnamed protein product [ (404 aa) initn: 588 init1: 550 opt: 558 Z-score: 623.5 bits: 123.5 E(): 5e-26 Smith-Waterman score: 559; 62.162% identity (74.324% similar) in 148 aa overlap (97-235:260-404) 70 80 90 100 110 120 FLJ000 ARARTLSPPQHRCGFACLGPREVVGRTSGHPSMQSTPGFTFGNLRVRETSSRLCHKLHQN :.: . : . : . :: .:. gi|193 QQYLCQPLLDAVLANIRSPVFNHSLYRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQS 230 240 250 260 270 280 130 140 150 160 170 FLJ000 LPGCGVLFQSRAVRQGRPGLVQV---------TDRAFCVADDKDLPSVPPLELSVPADYP .:. ..:....: ::.. : . .: :::::::::::::::::::: gi|193 IPS---VLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYP 290 300 310 320 330 340 180 190 200 210 220 230 FLJ000 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA 350 360 370 380 390 400 >>gi|50949442|emb|CAH10580.1| hypothetical protein [Homo (404 aa) initn: 588 init1: 550 opt: 558 Z-score: 623.5 bits: 123.5 E(): 5e-26 Smith-Waterman score: 559; 62.162% identity (74.324% similar) in 148 aa overlap (97-235:260-404) 70 80 90 100 110 120 FLJ000 ARARTLSPPQHRCGFACLGPREVVGRTSGHPSMQSTPGFTFGNLRVRETSSRLCHKLHQN :.: . : . : . :: .:. gi|509 QQYLCQPLLDAVLANIRSPVFNHSLYRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQS 230 240 250 260 270 280 130 140 150 160 170 FLJ000 LPGCGVLFQSRAVRQGRPGLVQV---------TDRAFCVADDKDLPSVPPLELSVPADYP .:. ..:....: ::.. : . .: :::::::::::::::::::: gi|509 IPS---VLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYP 290 300 310 320 330 340 180 190 200 210 220 230 FLJ000 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|509 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA 350 360 370 380 390 400 >>gi|119623354|gb|EAX02949.1| PC2 (positive cofactor 2, (456 aa) initn: 588 init1: 550 opt: 558 Z-score: 622.8 bits: 123.5 E(): 5.5e-26 Smith-Waterman score: 559; 62.162% identity (74.324% similar) in 148 aa overlap (97-235:312-456) 70 80 90 100 110 120 FLJ000 ARARTLSPPQHRCGFACLGPREVVGRTSGHPSMQSTPGFTFGNLRVRETSSRLCHKLHQN :.: . : . : . :: .:. gi|119 QQYLCQPLLDAVLANIRSPVFNHSLYRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQS 290 300 310 320 330 340 130 140 150 160 170 FLJ000 LPGCGVLFQSRAVRQGRPGLVQV---------TDRAFCVADDKDLPSVPPLELSVPADYP .:. ..:....: ::.. : . .: :::::::::::::::::::: gi|119 IPS---VLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYP 350 360 370 380 390 180 190 200 210 220 230 FLJ000 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA 400 410 420 430 440 450 >>gi|117938842|gb|AAH03221.1| Med15 protein [Mus musculu (310 aa) initn: 572 init1: 547 opt: 555 Z-score: 621.7 bits: 122.8 E(): 6.3e-26 Smith-Waterman score: 555; 95.062% identity (97.531% similar) in 81 aa overlap (155-235:230-310) 130 140 150 160 170 180 FLJ000 QNLPGCGVLFQSRAVRQGRPGLVQVTDRAFCVADDKDLPSVPPLELSVPADYPAQSPLWI : ::::::::::::::::::::::::.:: gi|117 LQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPMWI 200 210 220 230 240 250 190 200 210 220 230 FLJ000 DRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA ::::::::::::::::::::::::::::::::::::::::::.:::::::: gi|117 DRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSIHQACLSAA 260 270 280 290 300 310 >>gi|119623355|gb|EAX02950.1| PC2 (positive cofactor 2, (667 aa) initn: 584 init1: 550 opt: 558 Z-score: 620.6 bits: 123.7 E(): 7.3e-26 Smith-Waterman score: 559; 62.162% identity (74.324% similar) in 148 aa overlap (97-235:523-667) 70 80 90 100 110 120 FLJ000 ARARTLSPPQHRCGFACLGPREVVGRTSGHPSMQSTPGFTFGNLRVRETSSRLCHKLHQN :.: . : . : . :: .:. gi|119 QQYLCQPLLDAVLANIRSPVFNHSLYRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQS 500 510 520 530 540 550 130 140 150 160 170 FLJ000 LPGCGVLFQSRAVRQGRPGLVQV---------TDRAFCVADDKDLPSVPPLELSVPADYP .:. ..:....: ::.. : . .: :::::::::::::::::::: gi|119 IPS---VLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYP 560 570 580 590 600 180 190 200 210 220 230 FLJ000 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA 610 620 630 640 650 660 >>gi|47678605|emb|CAG30423.1| PCQAP [Homo sapiens] g (674 aa) initn: 588 init1: 550 opt: 558 Z-score: 620.5 bits: 123.7 E(): 7.3e-26 Smith-Waterman score: 559; 62.162% identity (74.324% similar) in 148 aa overlap (97-235:530-674) 70 80 90 100 110 120 FLJ000 ARARTLSPPQHRCGFACLGPREVVGRTSGHPSMQSTPGFTFGNLRVRETSSRLCHKLHQN :.: . : . : . :: .:. gi|476 QQYLCQPLLDAVLANIRSPVFNHSLYRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQS 500 510 520 530 540 550 130 140 150 160 170 FLJ000 LPGCGVLFQSRAVRQGRPGLVQV---------TDRAFCVADDKDLPSVPPLELSVPADYP .:. ..:....: ::.. : . .: :::::::::::::::::::: gi|476 IPS---VLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYP 560 570 580 590 600 610 180 190 200 210 220 230 FLJ000 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA 620 630 640 650 660 670 >>gi|119623353|gb|EAX02948.1| PC2 (positive cofactor 2, (677 aa) initn: 588 init1: 550 opt: 558 Z-score: 620.5 bits: 123.7 E(): 7.4e-26 Smith-Waterman score: 559; 62.162% identity (74.324% similar) in 148 aa overlap (97-235:533-677) 70 80 90 100 110 120 FLJ000 ARARTLSPPQHRCGFACLGPREVVGRTSGHPSMQSTPGFTFGNLRVRETSSRLCHKLHQN :.: . : . : . :: .:. gi|119 QQYLCQPLLDAVLANIRSPVFNHSLYRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQS 510 520 530 540 550 560 130 140 150 160 170 FLJ000 LPGCGVLFQSRAVRQGRPGLVQV---------TDRAFCVADDKDLPSVPPLELSVPADYP .:. ..:....: ::.. : . .: :::::::::::::::::::: gi|119 IPS---VLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYP 570 580 590 600 610 180 190 200 210 220 230 FLJ000 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA 620 630 640 650 660 670 235 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:00:13 2009 done: Fri Feb 27 11:05:17 2009 Total Scan time: 713.860 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]