# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00003.fasta.huge -Q ../query/FLJ00003.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00003, 235 aa vs ./tmplib.10216 library 2210759 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.2901+/-0.00528; mu= 13.7209+/- 0.356 mean_var=157.4113+/-34.969, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.102225 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00386 ( 811 res) sj04204 ( 811) 558 93.4 3.5e-20 KIAA0672 ( 824 res) hk02382 ( 824) 123 29.3 0.73 FLJ00141 ( 1326 res) sh04092 (1326) 116 28.6 1.9 KIAA0638 ( 1384 res) hj03347s1 (1384) 116 28.6 2 KIAA1063 ( 593 res) hj04848 ( 593) 110 27.1 2.3 KIAA1138 ( 1239 res) hj05928 (1239) 109 27.5 3.8 KIAA0584 ( 738 res) hj00933 ( 738) 105 26.5 4.3 FLJ00322 ( 659 res) sh08187 ( 659) 104 26.3 4.5 KIAA1816 ( 1162 res) fh16716 (1162) 106 27.0 5 KIAA0298 ( 901 res) hf00341(revised) ( 901) 102 26.2 6.6 FLJ00204 ( 573 res) sj04432 ( 573) 98 25.3 7.8 KIAA0495 ( 209 res) hg00106 ( 209) 92 23.8 8.3 KIAA0998 ( 1226 res) hk08691 (1226) 100 26.1 9.5 KIAA1439 ( 561 res) hg01641b ( 561) 95 24.9 10 KIAA0978 ( 1368 res) fg02182 (1368) 99 26.1 11 KIAA0545 ( 1368 res) hh00165s1 (1368) 98 25.9 12 KIAA1740 ( 1119 res) pj00674 (1119) 96 25.5 14 FLJ00131 ( 173 res) sh01962 ( 173) 86 22.8 14 KIAA1878 ( 453 res) pj01649 ( 453) 91 24.2 14 KIAA0121 ( 312 res) fk13569 ( 312) 89 23.6 14 FLJ00007 ( 701 res) as00007 ( 701) 93 24.7 14 KIAA1727 ( 1130 res) pg00153 (1130) 95 25.4 15 KIAA1052 ( 1456 res) hh04964 (1456) 96 25.7 16 FLJ00214 ( 322 res) sj05155 ( 322) 87 23.3 17 KIAA1030 ( 763 res) fh00432 ( 763) 91 24.5 19 KIAA1645 ( 386 res) fg04139 ( 386) 87 23.5 19 FLJ00050 ( 270 res) as00050 ( 270) 85 22.9 20 FLJ00287 ( 186 res) sh02562 ( 186) 82 22.2 22 KIAA0973 ( 1583 res) hj06871 (1583) 93 25.3 22 KIAA1326 ( 424 res) fh14376 ( 424) 85 23.2 25 KIAA2002 ( 764 res) bf00111 ( 764) 88 24.1 25 KIAA1852 ( 948 res) fj01514 ( 948) 89 24.4 25 KIAA1887 ( 967 res) fk02232 ( 967) 89 24.4 26 KIAA1471 ( 1421 res) fj02383s1 (1421) 91 24.9 26 KIAA0366 ( 1201 res) hh00124 (1201) 90 24.7 26 FLJ00049 ( 133 res) as00049 ( 133) 78 21.4 27 FLJ00163 ( 521 res) sh06933 ( 521) 85 23.4 28 KIAA0985 ( 697 res) hj08038 ( 697) 86 23.7 29 FLJ00175 ( 1516 res) sj00758 (1516) 90 24.8 30 KIAA1282 ( 1117 res) hh04440b(revised) (1117) 88 24.3 31 FLJ00305 ( 789 res) sh05120 ( 789) 86 23.8 31 KIAA1762 ( 1460 res) fh27937(revised) (1460) 89 24.6 32 KIAA0505 ( 200 res) hh00043 ( 200) 78 21.7 34 KIAA0771 ( 948 res) hk05113 ( 948) 86 23.9 34 KIAA0380 ( 1539 res) hh00518 (1539) 88 24.5 37 KIAA1059 ( 1297 res) hh12158 (1297) 87 24.3 37 KIAA0337 ( 1609 res) hg01226 (1609) 88 24.6 37 FLJ00222 ( 656 res) sj06165 ( 656) 83 23.2 38 KIAA1526 ( 963 res) fj04743(revised) ( 963) 85 23.8 38 KIAA0957 ( 693 res) hj05670 ( 693) 83 23.3 40 >>FLJ00386 ( 811 res) sj04204 (811 aa) initn: 574 init1: 550 opt: 558 Z-score: 455.6 bits: 93.4 E(): 3.5e-20 Smith-Waterman score: 559; 62.162% identity (74.324% similar) in 148 aa overlap (97-235:667-811) 70 80 90 100 110 120 FLJ000 ARARTLSPPQHRCGFACLGPREVVGRTSGHPSMQSTPGFTFGNLRVRETSSRLCHKLHQN :.: . : . : . :: .:. FLJ003 QQYLCQPLLDAVLANIRSPVFNHSLYRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQS 640 650 660 670 680 690 130 140 150 160 170 FLJ000 LPGCGVLFQSRAVRQGRPGLVQV---------TDRAFCVADDKDLPSVPPLELSVPADYP .:. ..:....: ::.. : . .: :::::::::::::::::::: FLJ003 IPS---VLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYP 700 710 720 730 740 750 180 190 200 210 220 230 FLJ000 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ003 AQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA 760 770 780 790 800 810 >>KIAA0672 ( 824 res) hk02382 (824 aa) initn: 53 init1: 53 opt: 123 Z-score: 108.8 bits: 29.3 E(): 0.73 Smith-Waterman score: 127; 26.154% identity (46.154% similar) in 195 aa overlap (3-180:529-708) 10 20 30 FLJ000 SASWVSVQRAGTGVGKQALTAAPGLCHPSQMA .::. : :...:... : :.. :. : KIAA06 SVATDNMMLEFYKKDGLRKIQSMGVRVMDTNWVA--RRGSSAGRKVSCAPPSMQPPAPPA 500 510 520 530 540 550 40 50 60 70 80 FLJ000 Q--RPEPT-LCSRPARLSALSSHTPGSR--QPGHASVPTARARTLSP-------PQHRCG . : :. : .: : . .:.. ::: . :.... ::: : : KIAA06 ELAAPLPSPLPEQPLDSPAAPALSPSGLGLQPGPERTSTTKSKELSPGSAQKGSPGSSQG 560 570 580 590 600 610 90 100 110 120 130 FLJ000 FACLG--PREVVGRTSGHPSMQSTPGFTFGNLRVRETSSRLCHKLHQNLPGCGVLFQSRA :: : : : : : : . .:..:..: . ..: : KIAA06 TACAGTQPGAQPGAQPGASPSPSQPPADQSPHTLRKVSKKLA-PIPPKVP-----F---- 620 630 640 650 660 140 150 160 170 180 190 FLJ000 VRQGRPGLV--QVTDRAFCVADDKDLPSVP-PLELSVPADYPAQSPLWIDRQWQYDANPF :.:: . : . . :. . ::.: : :: : : : KIAA06 ---GQPGAMADQSAGQLSPVSLSPTPPSTPSPYGLSYPQGYSLASGQLSPAAAPPLASPS 670 680 690 700 710 720 200 210 220 230 FLJ000 LQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA KIAA06 VFTSTLSKSRPTPKPRQRPTLPPPQPPTVNLSASSPQSTEAPMLDGMSPGESMSTDLVHF 730 740 750 760 770 780 >>FLJ00141 ( 1326 res) sh04092 (1326 aa) initn: 100 init1: 75 opt: 116 Z-score: 101.2 bits: 28.6 E(): 1.9 Smith-Waterman score: 116; 29.412% identity (54.902% similar) in 102 aa overlap (15-105:236-334) 10 20 30 40 FLJ000 SASWVSVQRAGTGVGKQALT--AAPGLCHPSQMAQRPEPTLC-- :. :. ..:: .. . :.. FLJ001 EIMDSLVLEEPGAAGKKPAATSPLSPMANGGRYLLSPPTSPGAMSVGSSYENTSPAFSPL 210 220 230 240 250 260 50 60 70 80 90 FLJ000 SRPARLSALSSHTPGSRQPGHASVPTARART------LSPPQHR-CGFACLGPREVVGRT : :: .. .::.:....:: . : . ::. :.::: : : .:: ..: FLJ001 SSPASSGSCASHSPSGQEPGPSVPPLVPARSSSYHLALQPPQSRPSGARSESPR--LSRK 270 280 290 300 310 320 100 110 120 130 140 150 FLJ000 SGHPSMQSTPGFTFGNLRVRETSSRLCHKLHQNLPGCGVLFQSRAVRQGRPGLVQVTDRA .:: : ::. FLJ001 GGHERPPS-PGLRGLLTDSPAATVLAEARRATESPRLGGQLPVVAISLSEYPASGALSQP 330 340 350 360 370 380 >>KIAA0638 ( 1384 res) hj03347s1 (1384 aa) initn: 100 init1: 75 opt: 116 Z-score: 101.0 bits: 28.6 E(): 2 Smith-Waterman score: 116; 29.412% identity (54.902% similar) in 102 aa overlap (15-105:236-334) 10 20 30 40 FLJ000 SASWVSVQRAGTGVGKQALT--AAPGLCHPSQMAQRPEPTLC-- :. :. ..:: .. . :.. KIAA06 EIMDSLVLEEPGAAGKKPAATSPLSPMANGGRYLLSPPTSPGAMSVGSSYENTSPAFSPL 210 220 230 240 250 260 50 60 70 80 90 FLJ000 SRPARLSALSSHTPGSRQPGHASVPTARART------LSPPQHR-CGFACLGPREVVGRT : :: .. .::.:....:: . : . ::. :.::: : : .:: ..: KIAA06 SSPASSGSCASHSPSGQEPGPSVPPLVPARSSSYHLALQPPQSRPSGARSESPR--LSRK 270 280 290 300 310 320 100 110 120 130 140 150 FLJ000 SGHPSMQSTPGFTFGNLRVRETSSRLCHKLHQNLPGCGVLFQSRAVRQGRPGLVQVTDRA .:: : ::. KIAA06 GGHERPPS-PGLRGLLTDSPAATVLAEARRATESPRLGGQLPVVAISLSEYPASGALSQP 330 340 350 360 370 380 >>KIAA1063 ( 593 res) hj04848 (593 aa) initn: 85 init1: 59 opt: 110 Z-score: 99.8 bits: 27.1 E(): 2.3 Smith-Waterman score: 110; 43.860% identity (56.140% similar) in 57 aa overlap (21-75:3-55) 10 20 30 40 50 FLJ000 SASWVSVQRAGTGVGKQALTAAPGLCHPSQMAQR-PEPTLCSRPARLSALSSHTPGSRQP :: : : : .. . .: :: :: ::: :. :: :: KIAA10 AAAARGRCLPCSLPSAIAQPHLC--PA--SALCSRRPGLGQP 10 20 30 60 70 80 90 100 110 FLJ000 GHA-SVPTARARTLSPPQHRCGFACLGPREVVGRTSGHPSMQSTPGFTFGNLRVRETSSR :. : : : . ::: KIAA10 GQPPSSPHAALASSSPPSPPPPARGRALPPMVSRPEPEGEAMDAELAVAPPGCSHLGSFK 40 50 60 70 80 90 >>KIAA1138 ( 1239 res) hj05928 (1239 aa) initn: 56 init1: 56 opt: 109 Z-score: 95.9 bits: 27.5 E(): 3.8 Smith-Waterman score: 109; 28.866% identity (52.577% similar) in 97 aa overlap (9-104:695-784) 10 20 30 FLJ000 SASWVSVQRAGTGVGKQALTAAPGLCH-PSQMAQRPEP : : .: .: .:. .:.::: KIAA11 KGLSGLTTLFPGQKRRISHLSKQGQEVEPPRRGPAVPPARPPTAQEVCYLRAQQAQRASA 670 680 690 700 710 720 40 50 60 70 80 90 FLJ000 TLCSRPARLSALSSHTPGSRQPGHASVPTARARTLSPPQHRCGFACLGPREVVGRTSGHP .: . ::::. : :. : :.: . : :. : . : : ..... ....: KIAA11 SLLQAPARLAEKS---PSV----HISAPGEKRRIAHIPNPRLAAAPTGAKRTLAASGSQP 730 740 750 760 770 100 110 120 130 140 150 FLJ000 SMQSTPGFTFGNLRVRETSSRLCHKLHQNLPGCGVLFQSRAVRQGRPGLVQVTDRAFCVA : :: KIAA11 SNGPEPGGQQLKTRTLSGMASKTTTTIIPKRIAHSPSLQSLKKPIIPKEFGGKVPTVIRQ 780 790 800 810 820 830 >>KIAA0584 ( 738 res) hj00933 (738 aa) initn: 116 init1: 92 opt: 105 Z-score: 94.9 bits: 26.5 E(): 4.3 Smith-Waterman score: 105; 42.424% identity (56.061% similar) in 66 aa overlap (13-75:46-107) 10 20 30 40 FLJ000 SASWVSVQRAGTGVGKQALTAAPGLCHPSQMAQRP--EPTLC :.: : :: : .:. :: ::. KIAA05 RAHSPSATTVCEPEAQGSASGCRYAAHPHWGLGGAA--AAGGSWEPQ--PPRPVCEPAGR 20 30 40 50 60 70 50 60 70 80 90 FLJ000 SRPARLSALSSHT-PGSRQPGHASVPTARARTLSPPQHRCGFACLGPREVVGRTSGHPSM ..: .: : ::::. ::. : ::::: :: KIAA05 GKPHPPAAPRSPLLPGSRRRPHAAQPGARARTSPPPASARNMAARPAATLAWSLLLLSSA 80 90 100 110 120 130 100 110 120 130 140 150 FLJ000 QSTPGFTFGNLRVRETSSRLCHKLHQNLPGCGVLFQSRAVRQGRPGLVQVTDRAFCVADD KIAA05 LLREGCRARFVAERDSEDDGEEPVVFPESPLQSPTVLVAVLARNAAHTLPHFLGCLERLD 140 150 160 170 180 190 >>FLJ00322 ( 659 res) sh08187 (659 aa) initn: 53 init1: 53 opt: 104 Z-score: 94.6 bits: 26.3 E(): 4.5 Smith-Waterman score: 104; 28.696% identity (56.522% similar) in 115 aa overlap (50-155:79-188) 20 30 40 50 60 70 FLJ000 TAAPGLCHPSQMAQRPEPTLCSRPARLSALSSHTPGSRQPGHA---SVPTAR-ARTLS-- : : :. :.:. . :.: . :. :. FLJ003 CSSSFWWTPIPFPLAISATTPSPPRWPRWRSRHRPAPRSPSSGWPQSAPHREGAQQLGLG 50 60 70 80 90 100 80 90 100 110 120 130 FLJ000 ---PPQHRCGFACLGPREVVGRTSGHPSMQSTPGFTFGNLRVRETSSRLCHKLHQNLPGC ::: : . : :: . : :::..:. : . . .. ...: ..: .. : FLJ003 CPGPPQLR-QLRC-GPAPGLRRCCGHPGQQQPCGRAASAAQLY-AAGRCMQRLGHTRPP- 110 120 130 140 150 160 140 150 160 170 180 190 FLJ000 GVLFQSRAVRQGRPGLVQVTDRAFCVADDKDLPSVPPLELSVPADYPAQSPLWIDRQWQY :... ..: : : :... ::: FLJ003 GLVLGGKAFLVGLP-WVSLVKFAFCFMGCWGPGRRGAGGHGEAGRYLSEEPEPYLAVYLH 170 180 190 200 210 220 >>KIAA1816 ( 1162 res) fh16716 (1162 aa) initn: 90 init1: 48 opt: 106 Z-score: 93.8 bits: 27.0 E(): 5 Smith-Waterman score: 106; 28.704% identity (56.481% similar) in 108 aa overlap (6-108:1033-1135) 10 20 30 FLJ000 SASWVSVQRAGTGVGKQALTAAPG-LCHPSQMAQR :: :.::. . :: : :: .: KIAA18 LGPFNNGASYPLQAGQPRLTKQHFPQGLSQSVVDANTGTVRTLNPAAMGRQMMPSLPGQ- 1010 1020 1030 1040 1050 1060 40 50 60 70 80 90 FLJ000 PEPTLCSRPARLSALSSHTPG----SRQPGHASVPTARARTLSPPQHRCGFACLGPREVV . : .:: .:.::. .:: :..:.. ..:.. ...: .. .. .:..: KIAA18 -QGTSQARPMVMSGLSQGVPGMPAFSQHPAQQQIPSG---SFAPSSQSQAYERNAPQDVS 1070 1080 1090 1100 1110 100 110 120 130 140 150 FLJ000 GRTSGHPSMQSTPGFTFGNLRVRETSSRLCHKLHQNLPGCGVLFQSRAVRQGRPGLVQVT :: . : ::. : KIAA18 YNYSGDGAGGSFPGLPDGADLVDSIIKGGPGDEWMQELDELFGNP 1120 1130 1140 1150 1160 >>KIAA0298 ( 901 res) hf00341(revised) (901 aa) initn: 34 init1: 34 opt: 102 Z-score: 91.7 bits: 26.2 E(): 6.6 Smith-Waterman score: 102; 31.200% identity (49.600% similar) in 125 aa overlap (25-142:336-455) 10 20 30 40 50 FLJ000 SASWVSVQRAGTGVGKQALTAAPGLCHPSQMAQRPEPTLCSRPARLSALSSHTP : :::. : :..:: . : : .: KIAA02 SRADAPAYGGLQGSSPFYQSHQSPVAQQEALSHPSHKFQS--PAVCSSSVCCSHCSPVSP 310 320 330 340 350 360 60 70 80 90 100 FLJ000 GSR-QPGHASVPTARARTLSP---PQHRCGFAC--LGPREVVGRTSGHPSMQSTPGF-TF . . : :. :.. : ::. .. : : ::: : :: : . : KIAA02 SLKGQVPPPSIHPAHSFRQPPEMVPQQLGSLQCSALLPREKELACSPHPPKLLQPWLETQ 370 380 390 400 410 420 110 120 130 140 150 160 FLJ000 GNLRVRETSSRLCHKLHQNLPGCGVLFQSRAVRQGRPGLVQVTDRAFCVADDKDLPSVPP .. . ::.:: ..: . : : : :. :.:: KIAA02 PPVEQESTSQRLGQQL-TSQPVCIVPPQD--VQQGAHAQPTLQTPSIQVQFGHHQKLKLS 430 440 450 460 470 480 170 180 190 200 210 220 FLJ000 LELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSV KIAA02 HFQQQPQQQLPPPPPPLPHPPPPLPPPPQQPHPPLPPSQHLASSQHESPPGPACSQNMDI 490 500 510 520 530 540 235 residues in 1 query sequences 2210759 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:26:00 2009 done: Fri Feb 27 10:26:00 2009 Total Scan time: 0.400 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]