hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna/full/aisin/as00002/interpro/cnk_1/seq.in
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Query:  as00002  1513

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
ABC_tran     ABC transporter                            294.5    1.3e-84   2
ABC_membrane ABC transporter transmembrane region       150.3    3.3e-41   2

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
ABC_membrane   1/2     306   572 ..     1   286 []    84.8  1.8e-21
ABC_tran       1/2     647   821 ..     1   199 []   116.0  6.9e-31
ABC_membrane   2/2     906  1219 ..     1   286 []    72.4  9.7e-18
ABC_tran       2/2    1294  1476 ..     1   199 []   185.8    7e-52

Alignments of top-scoring domains:
ABC_membrane: domain 1 of 2, from 306 to 572: score 84.8, E = 1.8e-21
                   *->lliailllilagatalvtfplllgrlldsgfplsdgnddhearssli
                      +l+++ll+++++ +++   plll++l+ +   l +g  +    s+++
     as00002   306    YLALGLLKLVGTMLGFS-GPLLLSLLVGF---LEEGQEP---LSHGL 345  

                   slailsllavfvliglllqgsfyllagerlgqrlrkrlfrallrqilglf
                    +a++ l + +vl + l +++ y     +++ ++r ++   l+ + l+l 
     as00002   346 LYALG-LAGGAVLGAVLQNQYGYE--VYKVTLQARGAVLNILYCKALQLG 392  

                   dsffdtnsvGeltsRltnDvekirdglgeklgllfqslatvvgglivmfy
                    s   + ++Ge +++l +D e++ ++ g +   + ++l++ +++++++ +
     as00002   393 PS---RPPTGEALNLLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQQ 439  

                   yswkLtLillailpllillsavlakklrklsrkeqkayakagsvaeEsls
                   +++ +  +l+ + +ll+++++v+a +++  ++++ ++ + + ++++E ls
     as00002   440 VGVAFVGGLI-LALLLVPVNKVIATRIMASNQEMLQHKDARVKLVTELLS 488  

                   girTVkafgrEeyelerfdkaledaekagikkaiiagllfgitqlisyls
                   gir++k  g+E++  +r +  ++ +e+  +++++++ +    ++++ ++ 
     as00002   489 GIRVIKFCGWEQALGARVEACRA-RELGRLRVIKYLDAACVYLWAALPV- 536  

                   yalalwfGgylvasvisgglsvgtlfaflslgnqligpl<-*
                   ++ ++ f++y     ++++l+  ++f++l l+ +li pl   
     as00002   537 VISIVIFITYV---LMGHQLTATKVFTALALVRMLILPL    572  

ABC_tran: domain 1 of 2, from 647 to 821: score 116.0, E = 6.9e-31
                   *->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
                      G ++++vG  G+GKS+LL +i+G+l+   G + + G           
     as00002   647    GMLVGIVGKVGCGKSSLLAAIAGELHRLRGHVAVRG----------- 682  

                   erlellrknigvvfQdptlfpnpeltvreniafglrlslglskdeqddrl
                        l k  g   Q+p +    + t+r+ni+fg       + + ++++l
     as00002   683 -----LSKGFGLATQEPWIQ---FATIRDNILFGKTF----DAQLYKEVL 720  

                   kkagaeelLerlglgyddlldrrpgtLSGGqkQRvaiARaLltkpklLlL
                   + + +++ L+ l+ g+ + +++++ tLSGGq+ R+a+ARa++++ +l+lL
     as00002   721 EACALNDDLSILPAGDQTEVGEKGVTLSGGQRARIALARAVYQEKELYLL 770  

                   DEPTagLDpasraqllellrelrqqggTvllvtHdldlldrlaDrilvle
                   D P a+ D++   +ll      +   +T ll tH+ +  ++ aD +l +e
     as00002   771 DDPLAAVDADVANHLLHRCILGMLSYTTRLLCTHRTEY-LERADAVLLME 819  

                   dG<-*
                   +G   
     as00002   820 AG    821  

ABC_membrane: domain 2 of 2, from 906 to 1219: score 72.4, E = 9.7e-18
                   *->lliailllilagatalvtfplllgrlldsgfplsdgnddhearssli
                       l+++++l+l  at  +   ++l+++++    l + n   ea +s  
     as00002   906    ALAILFSLLLMQATRNA-ADWWLSHWISQ---LKAENSSQEAQPSTS 948  

                   slails...................................llavfvlig
                     +++  +++    ++++   +  + ++  ++++++ +   +++++++ +
     as00002   949 PASMGLfspqlllfspgnlyipvfplpkaapngssdirfylTVYATIAGV 998  

                   lllqgsfyllagerlgqrlrkrlfrallrqilglfdsffdtnsvGeltsR
                    +l++ ++ + +   + +++ +l+r+ll+ +l ++  ff+ +++G++++R
     as00002   999 NSLCTLLRAVLFAAGTLQAAATLHRRLLHRVLMAPVTFFNATPTGRILNR 1048 

                   ltnDvekirdglgeklgllfqslatvvgglivmfyyswkLtLillailpl
                   +++Dv+  +d+l++ l +l+ + a ++g+l+v  +  ++L+L+l +++  
     as00002  1049 FSSDVACADDSLPFILNILLANAAGLLGLLAVLGSGLPWLLLLLPPLSIM 1098 

                   lillsavlakklrklsrkeqkayakagsvaeEslsgirTVkafgrEeyel
                   ++ +++ +   +r+l+r+ +   ++++s++ ++l g+ + +a g+  +++
     as00002  1099 YYHVQRHYRASSRELRRLGSLTLSPLYSHLADTLAGLSVLRATGATYRFE 1148 

                   erfdkaledaekagikkaiiagllfgitqlisylsyalalwfGgylvasv
                   e+    le +++ ++   +++ +l++++ql++ + ++ a+  ++      
     as00002  1149 EENLRLLELNQRCQFATSATMQWLDIRLQLMGAA-VVSAIAGIALV---Q 1194 

                   isggls.vgtlfaflslgnqligpl<-*
                   + +gl ++g + ++ls+ ++l+g l   
     as00002  1195 HQQGLAnPGLVGLSLSYALSLTGLL    1219 

ABC_tran: domain 2 of 2, from 1294 to 1476: score 185.8, E = 7e-52
                   *->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
                      Ge+l++vG+ G+GKS+LL ++ +ll+p +G++lldG  d s+l+   
     as00002  1294    GEKLGIVGRTGSGKSSLLLVLFRLLEPSSGRVLLDG-VDTSQLE--- 1336 

                   erlellrknigvvfQdptlfpnpeltvreniafglrlslglskdeqddrl
                     l+ lr +++ ++Q+p+lf   ++tvren++      +gl kd++ +++
     as00002  1337 --LAQLRSQLAIIPQEPFLF---SGTVRENLDP-----QGLHKDRALWQA 1376 

                   .kkagaeelLerlglgyddlldrrpgtLSGGqkQRvaiARaLltkpklLl
                    k ++++e+++++g  +   l++ +++LS Gq+Q +++ARaLlt++k+L+
     as00002  1377 lKQCHLSEVITSMGGLD-GELGEGGRSLSLGQRQLLCLARALLTDAKILC 1425 

                   LDEPTagLDpasraqllellrelrqqggTvllvtHdldlldrlaDrilvl
                    DE+Ta+ D ++ + l++++ +  + ++Tvl++ H+l+  +  +Dr+lvl
     as00002  1426 IDEATASVDQKTDQLLQQTICKRFA-NKTVLTIAHRLNT-ILNSDRVLVL 1473 

                   edG<-*
                   ++G   
     as00002  1474 QAG    1476 

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