BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147429.6 - phase: 0 /pseudo
         (974 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_O64712 Putative reverse transcriptase [Arabidopsis tha...    44  0.024
UniRef100_Q60DM2 F-box domain containing protein [Oryza sativa]        40  0.45
UniRef100_Q7Y193 Putative reverse transcriptase [Oryza sativa]         40  0.45
UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcrip...    39  0.59
UniRef100_Q7XLQ1 OSJNBa0044M19.5 protein [Oryza sativa]                38  1.3
UniRef100_Q8LNW5 Hypothetical protein OSJNBa0012L23.45 [Oryza sa...    38  1.7
UniRef100_Q9ZQD9 Putative non-LTR retroelement reverse transcrip...    38  1.7
UniRef100_O81441 T24H24.17 protein [Arabidopsis thaliana]              37  2.9
UniRef100_Q5UXJ3 Ribonuclease H-like protein [Haloarcula marismo...    35  8.5

>UniRef100_O64712 Putative reverse transcriptase [Arabidopsis thaliana]
          Length = 365

 Score = 43.9 bits (102), Expect = 0.024
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 897 YGFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDGNHTA 956
           +G R V FE+D++SL+  I  G   D S LG  + +I    L    C   F+ R+ N  A
Sbjct: 274 HGLRYVWFESDSKSLVTLINNG--EDHSLLGTLIYDIRHWMLKLPYCSLEFVNRERNSAA 331

Query: 957 HSLAQLAHSEPNL 969
            +LA   H+   L
Sbjct: 332 DALASHVHARDPL 344


>UniRef100_Q60DM2 F-box domain containing protein [Oryza sativa]
          Length = 855

 Score = 39.7 bits (91), Expect = 0.45
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 893 LLKDYGFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDG 952
           L K+ G + +   +D  ++I+RI+     DRS +G  + +I +L   F +C F  + R  
Sbjct: 761 LAKEEGLQHIVMASDCLTVIRRIQTS-GRDRSGVGCVIEDIKKLASTFVLCSFMHVNRLS 819

Query: 953 NHTAHSLAQLA 963
           N  AHSLA+ A
Sbjct: 820 NLAAHSLARNA 830


>UniRef100_Q7Y193 Putative reverse transcriptase [Oryza sativa]
          Length = 404

 Score = 39.7 bits (91), Expect = 0.45
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 893 LLKDYGFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDG 952
           L K+ G + +   +D  ++I+RI+     DRS +G  + +I +L   F +C F  + R  
Sbjct: 310 LAKEEGLQHIVMASDCLTVIRRIQTS-GRDRSGVGCVIEDIKKLASTFVLCSFMHVNRLS 368

Query: 953 NHTAHSLAQLA 963
           N  AHSLA+ A
Sbjct: 369 NLAAHSLARNA 379


>UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
          Length = 1382

 Score = 39.3 bits (90), Expect = 0.59
 Identities = 24/71 (33%), Positives = 38/71 (52%), Gaps = 1/71 (1%)

Query: 893  LLKDYGFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDG 952
            L K+ G   +   +D  ++I+RI+     DRS +G  + +I +L   F +C F  + R  
Sbjct: 1288 LAKEEGLEHIVMASDCLTVIRRIQTS-GRDRSGVGCVIEDIKKLASTFVLCSFMHVNRLS 1346

Query: 953  NHTAHSLAQLA 963
            N  AHSLA+ A
Sbjct: 1347 NLAAHSLARNA 1357


>UniRef100_Q7XLQ1 OSJNBa0044M19.5 protein [Oryza sativa]
          Length = 140

 Score = 38.1 bits (87), Expect = 1.3
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 898 GFRQVQFEADNESLIQRIKVGIDVDRSYLG-LFLSEIHQLQLNFDICHFSFIPRDGNHTA 956
           G  +VQFE D+ +L+Q +K       +  G L L  +    ++F++  F + PR+ N  A
Sbjct: 43  GMMRVQFETDSLTLVQGLKSSNGYRLAATGGLCLDILQPCVISFNVFSFHYCPRNCNRVA 102

Query: 957 HSLAQL 962
           H+LA L
Sbjct: 103 HALAAL 108


>UniRef100_Q8LNW5 Hypothetical protein OSJNBa0012L23.45 [Oryza sativa]
          Length = 243

 Score = 37.7 bits (86), Expect = 1.7
 Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 3/77 (3%)

Query: 898 GFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDGNHTAH 957
           G   +Q E+D+ +LIQ ++          GL L   + +  +F  C FS+ PR+ N  A 
Sbjct: 147 GMANIQLESDSLTLIQALREENFRYAPLGGLLLEAKNIITSSFVSCQFSYCPRECNKVAD 206

Query: 958 SLAQLAHSEP---NLVW 971
           ++A +  + P   +LVW
Sbjct: 207 AIASIGCNSPLNTDLVW 223


>UniRef100_Q9ZQD9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 280

 Score = 37.7 bits (86), Expect = 1.7
 Identities = 21/64 (32%), Positives = 34/64 (52%), Gaps = 2/64 (3%)

Query: 898 GFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDGNHTAH 957
           G +++ F +D+ +L++ I          L   L +IH L ++FD C F FI R  N  A 
Sbjct: 208 GIKRISFASDSLTLVKAINRKFLTKE--LHRILHDIHSLSISFDACSFFFISRKHNSEAD 265

Query: 958 SLAQ 961
           +LA+
Sbjct: 266 ALAK 269


>UniRef100_O81441 T24H24.17 protein [Arabidopsis thaliana]
          Length = 1077

 Score = 37.0 bits (84), Expect = 2.9
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 900  RQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDGNHTAHSL 959
            + + F +D++ +++ +   + V    L   L +I  L  +FD C F+FI R+ NH A +L
Sbjct: 1009 KAISFASDSQIIVKALNQKLQVKE--LHGILHDILSLSSSFDACTFTFINREFNHQADAL 1066

Query: 960  AQLA 963
            A+ A
Sbjct: 1067 AKRA 1070


>UniRef100_Q5UXJ3 Ribonuclease H-like protein [Haloarcula marismortui]
          Length = 198

 Score = 35.4 bits (80), Expect = 8.5
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 895 KDYGFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDGNH 954
           +DYGF  V    D+E ++++++   D +   L      + +L  +FD      +PR+ N 
Sbjct: 126 RDYGFDDVHIRGDSELIVKQVRGEWDTNDPELREHRVRVRELLTDFDDWQIEHVPREIND 185

Query: 955 TAHSLA 960
            A  LA
Sbjct: 186 RADELA 191


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.363    0.165    0.602 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,339,473,952
Number of Sequences: 2790947
Number of extensions: 47803232
Number of successful extensions: 162937
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 162933
Number of HSP's gapped (non-prelim): 10
length of query: 974
length of database: 848,049,833
effective HSP length: 137
effective length of query: 837
effective length of database: 465,690,094
effective search space: 389782608678
effective search space used: 389782608678
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 80 (35.4 bits)