Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146752.12 + phase: 2 /pseudo
         (127 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q84SC4 Hypothetical protein P0577B11.139 [Oryza sativa]      33  1.9
UniRef100_Q95PB1 Hypothetical protein [Ascaris suum]                   32  2.5

>UniRef100_Q84SC4 Hypothetical protein P0577B11.139 [Oryza sativa]
          Length = 196

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 1/59 (1%)

Query: 13  GNGVGGCGCGRRNF*RSVGYYFLMFLCSLLRLMFG-SGYRTLPKVTLFVGYMICSQIRS 70
           G   GG  CG   F   +G+Y L+ LC +L  MF   G R     TL    ++C  + S
Sbjct: 128 GVTAGGEWCGGGGFWSGLGFYMLLLLCLVLCAMFADEGVRWWIPGTLLAASLLCLNLFS 186


>UniRef100_Q95PB1 Hypothetical protein [Ascaris suum]
          Length = 371

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 20/63 (31%), Positives = 29/63 (45%), Gaps = 3/63 (4%)

Query: 19  CGCGRRNF*RSVGYYFLMFLCSLLRLMFGSGYRTLPKVTLFV---GYMICSQIRSLLRFC 75
           C C   N+ R + Y     LC  +   +G G+ T+  + LF    G+  C    SLL +C
Sbjct: 128 CFCSLFNWCRRLFYRSWCRLCRCVSTRWGHGFVTVRVIPLFAVAAGFHCCWSFCSLLNWC 187

Query: 76  RML 78
           R L
Sbjct: 188 RRL 190


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.358    0.167    0.583 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,245,449
Number of Sequences: 2790947
Number of extensions: 6380942
Number of successful extensions: 33297
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 33295
Number of HSP's gapped (non-prelim): 4
length of query: 127
length of database: 848,049,833
effective HSP length: 103
effective length of query: 24
effective length of database: 560,582,292
effective search space: 13453975008
effective search space used: 13453975008
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 67 (30.4 bits)


Medicago: description of AC146752.12