BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144930.1 - phase: 0 /pseudo
         (1322 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q6WAY7 Gag/pol polyprotein [Pisum sativum]                  261  1e-67
UniRef100_Q6WAY5 Gag/pol polyprotein [Pisum sativum]                  259  3e-67
UniRef100_Q6WAY3 Gag/pol polyprotein [Pisum sativum]                  259  3e-67
UniRef100_Q40369 RPE15 protein [Medicago sativa]                      259  3e-67
UniRef100_Q6L419 Putative gag polyprotein [Solanum demissum]          149  7e-34
UniRef100_Q60D62 Putative gag/pol polyprotein, 3'-partial [Solan...   112  8e-23
UniRef100_Q5XWL3 Gag-pol polyprotein-like [Solanum tuberosum]          98  1e-18
UniRef100_Q949K7 Putative gag polyprotein [Cicer arietinum]            96  6e-18
UniRef100_Q69F85 Gag-pol polyprotein [Phaseolus vulgaris]              71  2e-10
UniRef100_Q6L975 GAG-POL [Vitis vinifera]                              69  1e-09
UniRef100_Q94H26 Putative gag-pol polyprotein [Oryza sativa]           63  5e-08
UniRef100_Q7XL48 OSJNBa0056L23.9 protein [Oryza sativa]                61  3e-07
UniRef100_Q75H30 Hypothetical protein OSJNBa0027H16.12 [Oryza sa...    60  3e-07
UniRef100_Q7XN29 OSJNBa0083I11.15 protein [Oryza sativa]               60  4e-07
UniRef100_Q8H8Q2 Putative gag-pol polyprotein [Oryza sativa]           60  6e-07
UniRef100_Q8S5E4 Hypothetical protein OSJNBb0047B19.20 [Oryza sa...    60  6e-07
UniRef100_Q65WZ9 Putative polyprotein [Oryza sativa]                   59  1e-06
UniRef100_Q94I69 Putative retroelement [Oryza sativa]                  59  1e-06
UniRef100_Q94H67 Putative gag-pol protein [Oryza sativa]               59  1e-06
UniRef100_Q65WZ2 Putative polyprotein [Oryza sativa]                   57  3e-06

>UniRef100_Q6WAY7 Gag/pol polyprotein [Pisum sativum]
          Length = 1814

 Score =  261 bits (667), Expect = 1e-67
 Identities = 177/528 (33%), Positives = 266/528 (49%), Gaps = 55/528 (10%)

Query: 156 NADSFKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHC 215
           N+  F   ++ LV  + +P KFK P FD+YNG +CP+ H+  Y RK+  Y D++ + ++ 
Sbjct: 148 NSLGFDVTNMGLVEGLRIPYKFKAPSFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYF 207

Query: 216 FQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFR 275
           FQDSL   + +WY  L ++ I  + +L  AF   Y  N  + P+R  L+SL QK  ESF+
Sbjct: 208 FQDSLSGASLDWYMELKRDSIRCWKDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSGESFK 267

Query: 276 EYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAV 335
           EYAQRWR  AAR+ P + E E+T  F+ TL+  +++RM      +FS++V  G R E  +
Sbjct: 268 EYAQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGSCPFVSFSDVVICGERTESLI 327

Query: 336 RDGIIVFEKAESSVNASKRYGNGHHKKKETEIGMVSAGAGQSMATVAPINAAQMPPSYPY 395
           + G I     ++  ++SK+   G  +++E E   V     Q+ +    + A  +P     
Sbjct: 328 KTGKI----QDAGSSSSKKPFAGAPRRREGETNAVQYRRDQNRSQRCQVAAVTIPA---- 379

Query: 396 VPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQNQQARPTFPPIPMLYA 455
                           P P  Q Q  V    QQ +QQ P Q +Q    R  F  +PM YA
Sbjct: 380 ----------------PQPRQQQQQRVQQPQQQQQQQRPYQPRQRMPDR-RFDSLPMSYA 422

Query: 456 ELLPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLID 515
           ELLP LL  G    R    PP  LPP + ++++CDFH GA GH  E C AL++ V+ LID
Sbjct: 423 ELLPELLRLGMVELRT-MAPPTVLPPGYDANVRCDFHSGAPGHHTEKCRALQHKVQDLID 481

Query: 516 QGKLTFENNVPHVLDNPLPNHAA--VNMIEVCE-EAPRLDVRNVATPLVPLHIKLCKASL 572
              + F   VP+V++NP+P H    VN IE  E E   ++V +V T L+ +  +L    +
Sbjct: 482 AKAINFA-PVPNVVNNPMPQHGGHRVNNIEGKEAEDLVVNVDDVQTSLLVVKGRLLNGGV 540

Query: 573 FSHDHAKCLGCLHNPLGCYTVQDDIQSLMNDNFL----------TVSDV----------- 611
           +S     CLGC  +  GC  ++  IQ +M++  L          TVS +           
Sbjct: 541 YSGCDEDCLGCAESENGCDQLRTGIQGMMDEGCLQFSRAVKDRGTVSTITIYFKPSEGRG 600

Query: 612 --CVIVPVFHDPPVK-SIPLKKNAEPLVIRLPGPVPYTSDRAIPYKYN 656
              V  P  +  PV  S+P+  +A P  I   G     + RA+P+KY+
Sbjct: 601 QRVVSAPATNGTPVTISVPVTISA-PTTIAASGRRAVENSRAVPWKYD 647


>UniRef100_Q6WAY5 Gag/pol polyprotein [Pisum sativum]
          Length = 1105

 Score =  259 bits (663), Expect = 3e-67
 Identities = 204/689 (29%), Positives = 320/689 (45%), Gaps = 79/689 (11%)

Query: 3   QLRTELATLREELAKANDVMTALLAAQEQ-------SATAIPIATTIPMTTSMLPTASTD 55
           Q++ ELA ++  +A+  ++M  +   QE+          AIP     P      P    +
Sbjct: 3   QVQAELAEMKANMAQFMNMMQGVAQGQEELRAMVQRQEAAIPPVNHAPPEGG--PVNDNN 60

Query: 56  ARFAMPAGFPYGLPPFFTPSTAAGTSGTANNVLIPATNAASINATLPQTTAAVTEPLVHT 115
              A+P      +  +       G    +  ++  A NA +I A      A    P+V  
Sbjct: 61  VAAAVP------INNYDVGDELGGIRINSQPIVPDAANARTIRAP-----ARNPVPIVDR 109

Query: 116 MPQSVNINTQHGSI-PVTKTMEEMMEELAKELRHEIKANRGNADSFKTQDLCLVSKVDVP 174
                 + ++   +       +  ++ LA+++R        N+ SF   ++ LV  + +P
Sbjct: 110 QEDMFTLLSEDEDVLGRVDERDRKVDALAEKIR---AMECQNSLSFDVTNMGLVEGLRIP 166

Query: 175 KKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKN 234
            KFK P FD+YN  +CP+ H+  Y RK+  Y D++ + ++ FQDSL   + +WY  L ++
Sbjct: 167 YKFKAPSFDKYNDTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKRD 226

Query: 235 DIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDE 294
            I  + +L  AF   Y  N  + P+R  L+SL QK  ESF+EYAQRWR  AAR+ P + E
Sbjct: 227 SIRCWRDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSGESFKEYAQRWRELAARVQPPMLE 286

Query: 295 EEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESSVNASKR 354
            E+T  F+ TL+  +++RM      +FS++V  G R E  ++ G I     +   ++SK+
Sbjct: 287 RELTDMFIGTLQGVFMDRMGSCPFGSFSDVVICGERTESLIKTGKI----QDVGSSSSKK 342

Query: 355 YGNGHHKKKETEIGMVSAGAGQSMATVAPINAAQMPPSYPYVPYSQHPFFPPFYHQYPLP 414
              G  +++E E  +V     Q+        A  +P                     P P
Sbjct: 343 PFAGAPRRREGETNVVQHRRDQNRIEYRQAAAVTIPA--------------------PQP 382

Query: 415 PGQPQVPVNAIAQQMKQQLPVQQQQNQQARPTFPPIPMLYAELLPTLLHRGHCTTRQGKP 474
             Q Q  V    QQ +QQ P Q +Q    R  F  +PM YAELLP LL  G    R    
Sbjct: 383 RQQQQQRVQQPQQQQQQQRPYQPRQRMPDR-RFDSLPMSYAELLPELLRLGMVELRT-MA 440

Query: 475 PPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLP 534
           PP  LPP + ++++CDFH GA GH  E C AL++ V+ LID   + F   VP+V++NP+P
Sbjct: 441 PPTVLPPGYDANVRCDFHSGAPGHHTEKCRALQHKVQDLIDAKAINFA-PVPNVVNNPMP 499

Query: 535 NHAA--VNMIEVCE-EAPRLDVRNVATPLVPLHIKLCKASLFSHDHAKCLGCLHNPLGCY 591
            H    VN IE  E E   ++V +V T L+ +  +L    ++S     CLGC  +  GC 
Sbjct: 500 QHGGHRVNNIEGKEAEDLVVNVDDVQTSLLVVKGRLLNGGVYSGCDEDCLGCAESENGCD 559

Query: 592 TVQDDIQSLMNDNFL----------TVSDV-------------CVIVPVFHDPPVK-SIP 627
            ++  IQ +M++  L          TVS +              V  P  +D PV  S+P
Sbjct: 560 QLRAGIQGMMDEGCLQFSRAVKDRGTVSTITIYFKPTEGRGQRVVSAPATNDTPVTISVP 619

Query: 628 LKKNAEPLVIRLPGPVPYTSDRAIPYKYN 656
           +  +A P  I   G     + R +P+KY+
Sbjct: 620 VTISA-PTTIVASGRRAVENSRVVPWKYD 647


>UniRef100_Q6WAY3 Gag/pol polyprotein [Pisum sativum]
          Length = 2262

 Score =  259 bits (663), Expect = 3e-67
 Identities = 206/688 (29%), Positives = 316/688 (44%), Gaps = 79/688 (11%)

Query: 3   QLRTELATLREELAKANDVMTALLAAQEQSATAIPIATTIPMTTSMLPTASTDARFAMPA 62
           Q++TELA +R  +A+   +M  +   QE+      +   +    ++ P  +     A+P 
Sbjct: 3   QVQTELAEMRANMAQFMHMMQGVAQGQEE------LRALVQRQEAVTPPPNQ----ALPE 52

Query: 63  GFP-YGLPPFFTPSTAAGTSGTANNVLIPATNAA--SINATLPQTTAAVTEPLVHTMPQS 119
           G P +  P    P            + +     A  + NA +    A    P+V      
Sbjct: 53  GNPVHDTPAAAIPVNNYAVGEELMGIRVDGQPIAPDAANARVIHAPARNRIPIVDRQEDL 112

Query: 120 VNINTQHGSIPVTK-TMEEMMEELAKELRHEIKANRGNADSFKTQDLCLVSKVDVPKKFK 178
             + ++   IP      +  ++ LA+++R        N+  F   ++ LV  + +P KFK
Sbjct: 113 FTMFSEDEDIPGRNDARDRKVDALAEKIR---AMECQNSLGFDVTNMGLVEGLRIPYKFK 169

Query: 179 IPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKNDIHT 238
            P FD+YNG +CP+ H+  Y RK+  Y D++ + ++ FQDSL   + +WY  L  + I  
Sbjct: 170 APSFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKSDSIRC 229

Query: 239 FDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMT 298
           + +L  AF   Y  N  + P+R  L+SL QK  ESF+EYAQRWR  AAR+ P + E E+T
Sbjct: 230 WRDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSNESFKEYAQRWRELAARVQPPMLERELT 289

Query: 299 QTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESSVNASKRYGNG 358
             F+ TL+  +++RM      +FS++V  G R E  ++ G I     +   ++SK+   G
Sbjct: 290 DMFIGTLQGVFMDRMGSCPFGSFSDVVICGERTESLIKTGKI----QDVGSSSSKKPFAG 345

Query: 359 HHKKKETEIGMVSAGAGQSMATVAPINAAQMPPSYPYVPYSQHPFFPPFYHQYPLPPGQP 418
             +++E E   V     Q+        A  +P                     P P  Q 
Sbjct: 346 APRRREGETNAVQHRRDQNRIEYRQAAAVTIPA--------------------PQPRQQQ 385

Query: 419 QVPVNAIAQQMKQQLPVQQQQNQQARPTFPPIPMLYAELLPTLLHRG---HCTTRQGKPP 475
           Q  V    QQ +QQ P Q +Q    R  F  +PM YAELLP LL  G    CT      P
Sbjct: 386 QQRVQQ-PQQQQQQRPYQPRQRMPDR-RFDSLPMSYAELLPELLRLGLVELCT----MAP 439

Query: 476 PDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPN 535
           P  LPP + ++++CDFH GA GH  E C AL++ V+ LID   + F   VP+V++NP+P 
Sbjct: 440 PTVLPPGYDANVRCDFHSGAPGHHTEKCRALQHKVQDLIDANAINFA-PVPNVVNNPMPQ 498

Query: 536 HAA--VNMIEVCEEAPRLD-VRNVATPLVPLHIKLCKASLFSHDHAKCLGCLHNPLGCYT 592
           H    VN IE  E    +D V +V T L+ +  +L    ++S     CLGC  +  GC  
Sbjct: 499 HGGHRVNNIEGKEAEDLVDNVDDVQTSLLVVKSRLLNEGVYSGCDEDCLGCAESENGCDQ 558

Query: 593 VQDDIQSLMNDNFLTVS-------DVCVIVPVF-----HDPPVKSIPLKKNAEPLVIRLP 640
           ++  IQ +M++  L  S        V  I   F     H   V S P   N  P+ I +P
Sbjct: 559 LRAGIQGMMDEGCLQFSRAVKDRGTVSTITIYFKPSEGHGQRVVSAP-ATNGTPVTIPVP 617

Query: 641 ------------GPVPYTSDRAIPYKYN 656
                       G     + RA+P+KY+
Sbjct: 618 VTISAPTTIVASGRRAVENSRAVPWKYD 645


>UniRef100_Q40369 RPE15 protein [Medicago sativa]
          Length = 219

 Score =  259 bits (663), Expect = 3e-67
 Identities = 129/192 (67%), Positives = 151/192 (78%), Gaps = 11/192 (5%)

Query: 284 AAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFE 343
           AAAR++P LDEEE+TQTFLKTLKK++ ERMI++APNNFS+MVTMGTRLEEAVR+GIIV E
Sbjct: 13  AAARVSPRLDEEELTQTFLKTLKKEHKERMIVSAPNNFSDMVTMGTRLEEAVREGIIVLE 72

Query: 344 KAESSVNASKRYGNGHHKKKET-EIGMVSAGAGQSMATVAPINAAQMPPSYPYVPYSQHP 402
           K E S +A K+YGNGHHK+KE+ ++GMVS           P+NA Q+P  Y Y+  SQHP
Sbjct: 73  KGECSASAPKKYGNGHHKRKESKKVGMVSGNHD------TPVNATQLPLPYQYMQISQHP 126

Query: 403 FFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQNQQARPT----FPPIPMLYAELL 458
           FFPPFY QYPLPPGQP VPVNA+AQQ++ Q P QQQQ QQ  P     FPPIPM YAELL
Sbjct: 127 FFPPFYQQYPLPPGQPPVPVNAMAQQVQHQPPAQQQQQQQQGPRPKTYFPPIPMRYAELL 186

Query: 459 PTLLHRGHCTTR 470
           PTLL +GHC TR
Sbjct: 187 PTLLAKGHCVTR 198


>UniRef100_Q6L419 Putative gag polyprotein [Solanum demissum]
          Length = 421

 Score =  149 bits (375), Expect = 7e-34
 Identities = 104/364 (28%), Positives = 174/364 (47%), Gaps = 32/364 (8%)

Query: 61  PAGFPYGLPPFFTPSTAAGTSGTANNVLIPATNAASINATLPQTTAAVTEPLVHTMPQSV 120
           P   P    P F P+  A T+ T+N  ++P +N       L        E L   +P S 
Sbjct: 78  PLNTPMMSNPLFVPT--APTNSTSNPTVVPKSNNDPSFQVLHDHGYTPEEAL--KIPSSY 133

Query: 121 NINTQHGS-IPVTKTME----EMMEELAKELRHEIKANRG--NADSFKTQDLCLVSKVDV 173
               Q+ S   + KT++    E M +  K L H I+  +G          DLC+   V +
Sbjct: 134 PQTHQYSSPFKIEKTVKNEEHEEMTKKMKSLEHSIRDMQGLGGHKGISFSDLCMFPHVHL 193

Query: 174 PKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSK 233
           P  FK P+F++Y+G   P  H+ +Y  ++   +  + L++  F +SL+  A++W+     
Sbjct: 194 PTGFKTPNFEKYDGHGDPIAHLKRYYNQLRGAEGKEELLMAYFGESLVGIASKWFIDQDI 253

Query: 234 NDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALD 293
            + HT+D+LA  F   + +N  + P+R  L ++ +K  E+FREYA RWR  AAR+ P + 
Sbjct: 254 ANWHTWDDLARCFVQQFQYNIDIVPDRSSLANMRKKTTENFREYAVRWREQAARVKPPMK 313

Query: 294 EEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESSVNASK 353
           E EM   FL+  + DY   ++ A    F+E++ +G  +E  ++ G IV + A  +   + 
Sbjct: 314 ELEMIDVFLQAQEPDYFHYLLSAVGKTFTEVIKVGEMVENGIKSGKIVSQAALKATTQAL 373

Query: 354 RYGNGH---HKKKETEIGMVSAGAGQSMATVAPINAAQMPPSYPYVPYSQHPFFPPFYHQ 410
             G+G+    K++E    +VSA                 P +Y    ++QH +FPP   Q
Sbjct: 374 PNGSGNIGGKKRREDVATVVSA-----------------PRTYAQDNHTQH-YFPPQIPQ 415

Query: 411 YPLP 414
           Y +P
Sbjct: 416 YLVP 419


>UniRef100_Q60D62 Putative gag/pol polyprotein, 3'-partial [Solanum demissum]
          Length = 1784

 Score =  112 bits (280), Expect = 8e-23
 Identities = 95/367 (25%), Positives = 159/367 (42%), Gaps = 58/367 (15%)

Query: 61  PAGFPYGLPPFFTPSTAAGTSGTANNVLIPATNAASINATLPQTTAAVTEPLVHTMPQSV 120
           P   P    P F P+  A T+ T+N  ++P +N       L        E L   +P S 
Sbjct: 598 PLNTPMMSNPLFVPT--APTNSTSNPTVVPKSNNDPSFQVLHDHGYTPEEAL--KIPSSY 653

Query: 121 NINTQHGS-IPVTKTME-EMMEELAKELRHEIKANR-----GNADSFKTQDLCLVSKVDV 173
               Q+ S   + KT++ E  EE+AK+++   ++ R     G        DLC+   V +
Sbjct: 654 PQTHQYSSPFKIEKTVKNEEHEEMAKKMKSLEQSIRDMQGLGGHKGISFSDLCMFPHVHL 713

Query: 174 PKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSK 233
           P                               +  + L++  F +SL+  A+EW+     
Sbjct: 714 PT----------------------------GAEGKEELLMAYFGESLVGIASEWFIDQDI 745

Query: 234 NDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALD 293
            + HT+D LA  F   + +N  + P+R  L ++ +K  E+FREYA RWR  AAR+  ++ 
Sbjct: 746 ANWHTWDNLARCFVQQFQYNIDIVPDRSSLANMRKKTTENFREYAVRWREQAARVKLSMK 805

Query: 294 EEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESSVNASK 353
           E EM   FL+  + DY   ++ A    F E++ +G  +E  ++ G IV + A  +   + 
Sbjct: 806 ESEMIDVFLQAQEPDYFHYLLSAVGKTFVEVIKVGEMVENGIKSGKIVSQAALKATTQAL 865

Query: 354 RYGNGH--HKKKETEIGMVSAGA-------GQSMAT----------VAPINAAQMPPSYP 394
           + G+G+   KK+  ++  V  GA       G+S A+          ++PI      P   
Sbjct: 866 QNGSGNIGGKKRREDVATVGNGAKDEFTPIGESYASLFQKLRTLNVLSPIERKMSNPPPR 925

Query: 395 YVPYSQH 401
            + YSQH
Sbjct: 926 NLDYSQH 932



 Score = 67.0 bits (162), Expect = 4e-09
 Identities = 69/265 (26%), Positives = 112/265 (42%), Gaps = 42/265 (15%)

Query: 443  ARPTFPPIPMLYAEL---LPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHD 499
            A+  F PI   YA L   L TL        +   PPP  L         C +   A GH+
Sbjct: 888  AKDEFTPIGESYASLFQKLRTLNVLSPIERKMSNPPPRNLD----YSQHCAYCSDAPGHN 943

Query: 500  VEGCYALKYIVKKLIDQGKLTFEN-NVPHVLDNPLPNHAAVNMIEVCEEAPRLDVRNVAT 558
            +E C+ LK  ++ LID  ++  E+ N P++  NPLP H   NM+E+       +   VA 
Sbjct: 944  IERCWYLKKAIQDLIDTRRIIVESPNGPNINQNPLPRHTETNMLEMVN-----NHEEVAV 998

Query: 559  PLVPLHIKL---CKASLFSHDHAKCLGCLHNPLGCYTVQD----------DIQSLMNDNF 605
            P  P+ +K+    ++S    D  K +     P G  +  +           I+  + D +
Sbjct: 999  PYKPI-LKVETGMESSTNVIDLTKIM-----PSGAESTSEKLTPSSAPILTIKGALEDVW 1052

Query: 606  LTVSDVCVIVPVFHDPPVKSIPLKKNAEPLVIRLPGPVPYTSDRAIPYKYNATIIE-NGV 664
             +  +  ++VP   D P+  I       P++IR    +P T+ +A+P+ Y  T++   G 
Sbjct: 1053 ASQREARLVVPRGPDKPI-LIVQGAYIPPVIIRPVSQLPMTNPKAVPWNYEPTVVTYEGK 1111

Query: 665  EVPLVSLAVVNNTAEGTSAALRSGR 689
            E        +N   +      RSGR
Sbjct: 1112 E--------INEEVDEIGGMTRSGR 1128


>UniRef100_Q5XWL3 Gag-pol polyprotein-like [Solanum tuberosum]
          Length = 1716

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 81/294 (27%), Positives = 126/294 (42%), Gaps = 72/294 (24%)

Query: 258 PNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAA 317
           P+R  L  + QK  ES+RE+A RWR  AAR+ P + E+E+ + F++  K           
Sbjct: 299 PDRYSLEKMKQKSTESYREFAYRWRKEAARVRPPMSEKEIVEVFVRVAK----------- 347

Query: 318 PNNFSEMVTMGTRLEEAVRDGIIVFEKA--ESSVNASKRYGNGHHKKKETEIGMVSAGAG 375
              F+E+V +G  +E+ +R G IV+  A  ESS+           KKK  ++  +S   G
Sbjct: 348 ---FAEIVKIGETIEDGLRTGKIVYVAASPESSILL---------KKKRDDVSSISY-EG 394

Query: 376 QSMATVAPINAAQMPPSYPYVPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPV 435
           +  A  +     +  PS        H  F                               
Sbjct: 395 KKTAKKSSSCQGRSRPS--------HSSF------------------------------- 415

Query: 436 QQQQNQQARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQGA 495
              + + AR  F P+     +L   L   G+     G  P D     +R D +C +H  +
Sbjct: 416 ---EKKPAR-NFTPLIKSRTKLFERLTVAGYIHP-VGPKPVDTSSKFYRPDQRCAYHSNS 470

Query: 496 LGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPNHA--AVNMIEVCEE 547
           +GHD E C  LK+ ++ LI+Q  ++ +   P+V  NPLPNH    +NMIE  E+
Sbjct: 471 VGHDTEDCINLKHKIQDLINQNVVSLQTVAPNVNSNPLPNHGGITINMIETDED 524


>UniRef100_Q949K7 Putative gag polyprotein [Cicer arietinum]
          Length = 88

 Score = 96.3 bits (238), Expect = 6e-18
 Identities = 41/88 (46%), Positives = 59/88 (66%)

Query: 165 LCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDA 224
           +CLV  V +P+KFK+ +F++Y G TCP+NH+  Y RKM ++  ND L+IH FQDSL   +
Sbjct: 1   MCLVPDVTIPRKFKVLEFEKYKGATCPKNHLTMYGRKMASHAHNDKLLIHFFQDSLSGAS 60

Query: 225 AEWYTSLSKNDIHTFDELAAAFKSHYGF 252
             WY  L +N IH++ +LA AF   Y +
Sbjct: 61  LSWYMHLERNRIHSWKDLADAFLRQYKY 88


>UniRef100_Q69F85 Gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score = 71.2 bits (173), Expect = 2e-10
 Identities = 79/348 (22%), Positives = 125/348 (35%), Gaps = 76/348 (21%)

Query: 173 VPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLS 232
           +P K++    + Y+G T P  H+  +  +M  Y  + ++    F  SL E    W++ L 
Sbjct: 221 LPDKWRGLTINLYDGSTDPDEHLNIFRTQMTLYTTDRTVWCKVFPTSLREGPLGWFSDLP 280

Query: 233 KNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPAL 292
            N I +FD L   F + Y  +   + +   L ++ Q++ ES R +  R+      I    
Sbjct: 281 PNSIASFDALELKFTTQYATSRPHRTSSMSLLNVKQERGESLRTFMNRFSKVCMNIRNLN 340

Query: 293 DEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESSVNAS 352
            E  M       L   + E +I   P N  E+ T  T+           F + E  ++  
Sbjct: 341 PEIAMHHLVSAILPGRFTESLIKRPPCNMDELRTRATK-----------FMQIEEHID-- 387

Query: 353 KRYGNGHHKKKETEIGMVSAGAGQSMATVAPINAAQMPPSYPYVPYSQHPFFPPFYHQY- 411
                 +H+K   E    S G                PP+ P       P   P +H Y 
Sbjct: 388 ------YHRKTYAENTDNSKGI--------------RPPTIPTDRERHRPNRGPRFHNYT 427

Query: 412 PLPPGQPQVPVNAIAQQMKQQLPVQQQQNQQARPTFPPIPMLYAELLPTLLHRGHCTTRQ 471
           PL      VP   +  +                        L  EL+PTL          
Sbjct: 428 PL-----IVPRGKVLDE-----------------------ALQIELIPTL---------- 449

Query: 472 GKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKL 519
               P   PP   +  +C +H+   GH  EGC ALK  +++L+  G L
Sbjct: 450 ---RPSQTPPNADTSKRCQYHRN-YGHTTEGCQALKDKIEELVQAGHL 493


>UniRef100_Q6L975 GAG-POL [Vitis vinifera]
          Length = 549

 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 40/132 (30%), Positives = 66/132 (49%), Gaps = 1/132 (0%)

Query: 174 PKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSK 233
           P+ F +P F  Y+G + P +HI+ Y + M     ND+L+   F  SL   A  W+  L  
Sbjct: 16  PRGFLVPKFSTYDGTSDPFDHIMHYRQLMTLDIGNDALLCKVFPASLQGQALSWFHRLPP 75

Query: 234 NDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALD 293
           N +  F +L+ AF   Y  + R K N   L+++  +  ES RE+ +R+ G A     A  
Sbjct: 76  NSVGNFRDLSEAFVGQYLCSARHKQNISTLQNIKMQDNESLREFVKRF-GQAVLQVEACS 134

Query: 294 EEEMTQTFLKTL 305
            + + Q F +++
Sbjct: 135 MDAVLQIFKRSI 146



 Score = 40.4 bits (93), Expect = 0.36
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 19/124 (15%)

Query: 434 PVQQQQNQQARPTFPPIPML---YAELLPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKCD 490
           P  ++Q   +RP  PP+  L   Y +LLP +  +G    +  +P       R RS  +C 
Sbjct: 211 PSDRRQEGPSRPKMPPLTPLSISYEKLLPMI--QGLSDFKWPRPIATDPSTRDRSR-RCA 267

Query: 491 FHQGALGHDVEGCYALKYIVKKLIDQGKL------------TFENNVPHVLDNPLPNHAA 538
           FH+   GH  E C + +Y+V++LI  G L              ++N P     P+   A 
Sbjct: 268 FHKDH-GHTTETCRSFQYLVERLIKAGHLKQYLRTDTGGRDVSQHNNPGAPRAPVATKAV 326

Query: 539 VNMI 542
           +N I
Sbjct: 327 INYI 330


>UniRef100_Q94H26 Putative gag-pol polyprotein [Oryza sativa]
          Length = 1538

 Score = 63.2 bits (152), Expect = 5e-08
 Identities = 61/246 (24%), Positives = 107/246 (42%), Gaps = 11/246 (4%)

Query: 40  TTIPMTTSMLPTASTDARFAMPAGFPYGLPPFFTPSTAAGTSGTANNVLIPATNAASINA 99
           T   M  SM+  +  + +   P   P G+ P + P     T       LIP  NA S   
Sbjct: 168 TLANMVKSMVDGSMAEYQATGPVYLPGGVFPNYRPII---TDNQPVVQLIPL-NAPSAQP 223

Query: 100 TLPQTTAAVTEPLVHTMPQSVNINT-QHGSIPVTKTMEEMMEELAKELRHEIKANRGNAD 158
           T P  +A    P +    Q +N    Q    P  +   +++ ++ KE       + GN  
Sbjct: 224 TAP-VSAHAPAPTLSAPGQVINPRLLQSQGTPQQRPWADLIADVMKEQFGLRLKDAGNL- 281

Query: 159 SFKTQDLCLVSKVDVPKKFKIPDFDRYNGLTC--PQNHIIKYVRKMGNYKDNDSLMIHCF 216
            ++        +V +P +FK+PDF ++ G        HI +++ + G     D+L +  F
Sbjct: 282 -YRQPYPEWFERVPLPNRFKVPDFSKFLGQDSISTYKHISRFLAQCGEASAVDALKVRLF 340

Query: 217 QDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFRE 276
           + SL   A  W++SL    I+++ +L   F S++ ++   +     L S+ Q+ +E   E
Sbjct: 341 RLSLYGSAFTWFSSLPYGSINSWADLEKQFHSYF-YSGVHEMKLSDLTSIKQRHDEPVHE 399

Query: 277 YAQRWR 282
           Y QR+R
Sbjct: 400 YIQRFR 405


>UniRef100_Q7XL48 OSJNBa0056L23.9 protein [Oryza sativa]
          Length = 836

 Score = 60.8 bits (146), Expect = 3e-07
 Identities = 72/308 (23%), Positives = 128/308 (41%), Gaps = 27/308 (8%)

Query: 102 PQTTAAVTEPLVHTMPQSVNINTQHGSIPV---TKTMEEMMEELAKELRHEIKANRGNAD 158
           PQ  A     L+ T+ +   +N     + +   TKTM       A+   H +  +  + D
Sbjct: 281 PQQNAVAAITLLDTLLKENELNQSDHVVNILNQTKTMIAASRRAARGHHHSLDRHDDDLD 340

Query: 159 SFK--TQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCF 216
                T DL    +VD P  FK    ++Y+G T P++ +  Y   +     +   + +  
Sbjct: 341 GVAAFTNDL---RRVDWPAGFKPTGIEKYDGSTNPESWLTVYGLAIRAAGGDSKALANYL 397

Query: 217 QDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESFR 275
             +L + A  W   L +  I ++ EL   F +++   T  +P  +F L ++ QK  ES R
Sbjct: 398 PVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQFDLYNVIQKSGESLR 456

Query: 276 EYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAV 335
           +Y +R+     +I+   D + +   F K ++ + +       P       T+    E+A 
Sbjct: 457 DYIRRFSEQCNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPK-----TVKLMFEKAN 510

Query: 336 RDGIIVFEKAESSVNASKRYGNGHHKKKETEIGMVSAGAGQSMATVAPINAAQ--MPPSY 393
                 + KAE +V ASK+ G+    KK+T     + G G   +  + +N     M    
Sbjct: 511 E-----YAKAEDAVIASKQSGSSWKPKKDTP----ATGGGGRSSKRSRVNTFDKIMNSQC 561

Query: 394 PYVPYSQH 401
           P+ P S H
Sbjct: 562 PHHPKSNH 569


>UniRef100_Q75H30 Hypothetical protein OSJNBa0027H16.12 [Oryza sativa]
          Length = 1782

 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 32/115 (27%), Positives = 63/115 (53%), Gaps = 3/115 (2%)

Query: 170 KVDVPKKFKIPDFDRYNGL--TCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEW 227
           +V +P +FK+PDF +++G        HI +++ + G     D+L +  F+ SL   A  W
Sbjct: 464 RVPLPNRFKVPDFSKFSGQDGVSTYEHISRFLAQYGEASAVDALKVRLFKLSLSGSAFTW 523

Query: 228 YTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWR 282
           ++SL    I+++ +L   F S++ ++   +    +L ++ Q+ +E   EY QR+R
Sbjct: 524 FSSLPYGSINSWADLEKQFHSYF-YSGVHEMKLSYLIAIKQRHDEPVHEYIQRFR 577


>UniRef100_Q7XN29 OSJNBa0083I11.15 protein [Oryza sativa]
          Length = 1563

 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 33/115 (28%), Positives = 62/115 (53%), Gaps = 3/115 (2%)

Query: 170 KVDVPKKFKIPDFDRYNGL--TCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEW 227
           +V +P +FKIPDF +++G        HI +Y+ + G     D+L +  F+ SL   A  W
Sbjct: 466 RVPLPNRFKIPDFSKFSGQEGVSTYEHISRYLAQYGEASAVDALRVRMFRLSLSGSAFTW 525

Query: 228 YTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWR 282
           ++SL    ++++ +L   F S++ ++   +     L ++ Q+ +E   EY QR+R
Sbjct: 526 FSSLPYGSVNSWADLEKQFHSYF-YSGVHEMKLSDLTAIKQRYDEPVHEYIQRFR 579


>UniRef100_Q8H8Q2 Putative gag-pol polyprotein [Oryza sativa]
          Length = 1152

 Score = 59.7 bits (143), Expect = 6e-07
 Identities = 54/253 (21%), Positives = 107/253 (41%), Gaps = 23/253 (9%)

Query: 38  IATTIPMTTSMLPTASTDARFAMPAGFPYGLPPFFTPSTAAGTSGTANNVLI-----PAT 92
           + T +  +T  +P+ +   +   PA  P        P+T+A   G   N  +     P  
Sbjct: 115 LITDVQSSTQAVPSVTPTTQPTAPASTPL-------PATSAMAPGQPMNPRLLLREHPQH 167

Query: 93  NAASINATLPQTTAAVTEPLVHTMPQSVNINTQHGSIPVTKTMEEMMEELAKELRHEIKA 152
           +    N       AA+  P  H +        Q   I  T  ++++++ + +++      
Sbjct: 168 SGQVANRPTQDLVAAMFLPPQHAVDLIQQQPIQQQPIQQTPQIQQVVQPIQQQVMQP--- 224

Query: 153 NRGNADSFKTQDLC-LVSKVDVPKKFKIPDFDRYNGL--TCPQNHIIKYVRKMGNYKDND 209
               A   + Q       +V +P +FK+PDF +++G        HI + + + G     D
Sbjct: 225 ----AQPIQQQPYPEWFERVPLPNRFKVPDFSKFSGQDGVSTYEHISRLLAQCGEASAVD 280

Query: 210 SLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQK 269
           +L +  F+ SL   A  W++SL    I+++ +L   F S++ ++   +     L ++ Q+
Sbjct: 281 ALKVRLFRLSLSGSAFTWFSSLPYGSINSWADLEKQFHSYF-YSGVHEMKLSDLTAIKQQ 339

Query: 270 KEESFREYAQRWR 282
            +E   EY QR+R
Sbjct: 340 HDEPVHEYIQRFR 352


>UniRef100_Q8S5E4 Hypothetical protein OSJNBb0047B19.20 [Oryza sativa]
          Length = 821

 Score = 59.7 bits (143), Expect = 6e-07
 Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 8/172 (4%)

Query: 113 VHTMPQSVNINTQHGSIPVTKTMEEMMEELAKELRHEIKANRGNADSFKTQDLCLVSKVD 172
           V+T+         H   P  K   +M+ ++ +E       + GN   ++   L    +V 
Sbjct: 96  VYTIDSCYKKTGVHKGAPQQKPWADMIADVMREQFGLKPKDSGNL--YRHPYLEHFERVP 153

Query: 173 VPKKFKIPDFDRYNGL--TCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTS 230
           +P ++K+PDF +++G        H+ +++   G     D+L +  F       A  W+++
Sbjct: 154 LPNRYKVPDFSKFSGKDNVTTYEHVNRFLAHCGEVSATDALRVRLFPS---RSAFTWFSA 210

Query: 231 LSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWR 282
           L  N +HT+ +L   F  ++ ++   +     L S+ QK +ES ++Y QR+R
Sbjct: 211 LPYNFVHTWADLERQFHKYF-YSGIHQMKLSDLTSIKQKHDESVQDYIQRFR 261


>UniRef100_Q65WZ9 Putative polyprotein [Oryza sativa]
          Length = 1316

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 31/115 (26%), Positives = 63/115 (53%), Gaps = 3/115 (2%)

Query: 170 KVDVPKKFKIPDFDRYNGL--TCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEW 227
           +V +P  +K+PDF +++G        HI +++ + G     D+L +  F  SL   A  W
Sbjct: 227 RVPLPSGYKVPDFSKFSGQDNVSTYEHISRFLAQSGEASTIDALRVRLFPLSLSGSAFTW 286

Query: 228 YTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWR 282
           ++SL  N ++++ +L   F S++ ++   +     L ++ Q+ +ES ++Y QR+R
Sbjct: 287 FSSLPYNSVNSWADLEKQFHSYF-YSGIHEMKLSDLMAIRQRHDESMQDYIQRFR 340


>UniRef100_Q94I69 Putative retroelement [Oryza sativa]
          Length = 2014

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 33/115 (28%), Positives = 61/115 (52%), Gaps = 3/115 (2%)

Query: 170 KVDVPKKFKIPDFDRYN--GLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEW 227
           +V +P +FK+PDF +++    T    HI +++ + G     D+L +  F+ SL      W
Sbjct: 400 RVPLPNRFKVPDFSKFSWQDSTSTYEHISRFLAQCGEASAVDALKVRLFRLSLAGSTFTW 459

Query: 228 YTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWR 282
           ++SL    I+++ +L   F S++ ++   +     L S+ QK +E   EY QR+R
Sbjct: 460 FSSLPYGSINSWADLEKQFHSYF-YSGIHEMKLSDLTSIKQKHDEPVHEYIQRFR 513


>UniRef100_Q94H67 Putative gag-pol protein [Oryza sativa]
          Length = 2273

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 33/115 (28%), Positives = 61/115 (52%), Gaps = 3/115 (2%)

Query: 170 KVDVPKKFKIPDFDRYN--GLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEW 227
           +V +P +FK+PDF +++    T    HI +++ + G     D+L +  F+ SL      W
Sbjct: 653 RVPLPNRFKVPDFSKFSWQDSTSTYEHISRFLAQCGEASAVDALKVRLFRLSLAGSTFTW 712

Query: 228 YTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWR 282
           ++SL    I+++ +L   F S++ ++   +     L S+ QK +E   EY QR+R
Sbjct: 713 FSSLPYGSINSWADLEKQFHSYF-YSGIHEMKLSDLTSIKQKHDEPVHEYIQRFR 766


>UniRef100_Q65WZ2 Putative polyprotein [Oryza sativa]
          Length = 1490

 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 30/115 (26%), Positives = 64/115 (55%), Gaps = 3/115 (2%)

Query: 170 KVDVPKKFKIPDFDRYNGL--TCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEW 227
           +V +P ++K+PDF +++G        HI +++ + G     D+L +  F  SL   A  W
Sbjct: 245 RVPLPSRYKVPDFSKFSGQDNVSTYEHISRFLAQCGEASAIDTLRVRLFPLSLSGSAFTW 304

Query: 228 YTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWR 282
           ++SL  N ++++ +L   F +++ ++   +     L ++ Q+ +ES ++Y QR+R
Sbjct: 305 FSSLPYNSVNSWADLEKQFHNYF-YSGIHEMKLLDLTAIRQRHDESVQDYIQRFR 358


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.332    0.143    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,174,283,827
Number of Sequences: 2790947
Number of extensions: 93246459
Number of successful extensions: 336343
Number of sequences better than 10.0: 835
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 795
Number of HSP's that attempted gapping in prelim test: 331373
Number of HSP's gapped (non-prelim): 3384
length of query: 1322
length of database: 848,049,833
effective HSP length: 140
effective length of query: 1182
effective length of database: 457,317,253
effective search space: 540548993046
effective search space used: 540548993046
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 81 (35.8 bits)