BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144514.8 - phase: 0 /pseudo
(555 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [A... 137 1e-30
UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa] 132 3e-29
UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcrip... 130 1e-28
UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabi... 129 2e-28
UniRef100_Q7XT98 OSJNBa0052O21.12 protein [Oryza sativa] 128 5e-28
UniRef100_Q9ZQF8 Putative non-LTR retroelement reverse transcrip... 124 7e-27
UniRef100_Q9FYK1 F21J9.30 [Arabidopsis thaliana] 122 3e-26
UniRef100_Q9FXJ5 F5A9.24 [Arabidopsis thaliana] 122 3e-26
UniRef100_Q6I5L7 Hypothetical protein OSJNBb0088F07.2 [Oryza sat... 122 4e-26
UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcrip... 120 8e-26
UniRef100_O22148 Putative non-LTR retroelement reverse transcrip... 120 8e-26
UniRef100_Q9ZQM0 Putative non-LTR retroelement reverse transcrip... 119 2e-25
UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcrip... 119 3e-25
UniRef100_O22220 Putative non-LTR retroelement reverse transcrip... 117 7e-25
UniRef100_Q75M12 Hypothetical protein P0676G05.2 [Oryza sativa] 117 1e-24
UniRef100_Q7XCS1 Putative reverse transcriptase [Oryza sativa] 116 1e-24
UniRef100_Q7XLZ5 OSJNBa0086O06.14 protein [Oryza sativa] 116 1e-24
UniRef100_Q9SHY0 F1E22.12 [Arabidopsis thaliana] 116 2e-24
UniRef100_Q7XGD3 Putative retroelement [Oryza sativa] 116 2e-24
UniRef100_Q8S5K1 Putative retroelement [Oryza sativa] 116 2e-24
>UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 137 bits (344), Expect = 1e-30
Identities = 70/156 (44%), Positives = 98/156 (61%)
Query: 51 AVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEG 110
A++ K GF +WI + C+ TV + VL+N G IP RGLRQGDPLSPY+FILC E
Sbjct: 375 ALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEV 434
Query: 111 LSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAAS 170
L + IR AE +I+GI + +P++SHLLFADD F KA++ Q ++ IL Y++ S
Sbjct: 435 LIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVS 494
Query: 171 GQAISLPISEIYCNQNVFDALKASITNIIGVQDVLG 206
GQ I+ S I V D++KA I I+G+ ++ G
Sbjct: 495 GQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGG 530
Score = 79.3 bits (194), Expect = 3e-13
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 4/185 (2%)
Query: 370 VAQVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFS 429
+ +VG+ A+IS+ ++PWI G+ + V SLID + W++ ++ +F
Sbjct: 707 IKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFD 766
Query: 430 KDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPEFWM--- 486
+ + + N D L W K G Y+VKS + DL + T L P+
Sbjct: 767 PEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKA 826
Query: 487 GIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPF 546
IW+++ PPK++ + +L +P L+ +G+ C CVS EE + H FQC
Sbjct: 827 YIWKVQCPPKLRH-FLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHP 885
Query: 547 SVQVW 551
+ Q+W
Sbjct: 886 ARQIW 890
>UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa]
Length = 1509
Score = 132 bits (331), Expect = 3e-29
Identities = 64/151 (42%), Positives = 93/151 (61%)
Query: 52 VMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGL 111
+M+K GF+ W+ + CV TV + + VN + F P RGLRQGDPLSPY+F+LC EG
Sbjct: 793 MMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGF 852
Query: 112 SSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASG 171
S+L+ EE + GI IC+GAPS+SHLLFADD + +A+ G+ Q ++ IL Y+ SG
Sbjct: 853 SALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSG 912
Query: 172 QAISLPISEIYCNQNVFDALKASITNIIGVQ 202
Q I+ S + + N K ++ + +Q
Sbjct: 913 QVINKDKSAVMFSPNTSSLEKGAVMAALNMQ 943
Score = 77.8 bits (190), Expect = 8e-13
Identities = 60/193 (31%), Positives = 88/193 (45%), Gaps = 17/193 (8%)
Query: 372 QVGTCATISILDEPWIKDGRSINDNLP-GADFVRNFCVDSLIDDETKCWDVPFIQ*VF-S 429
+VG + I+I +PWI G S P GA+ V V+ LID T WD + F
Sbjct: 1126 RVGDGSKINIWADPWIPRGWSRKPMTPRGANLVTK--VEELIDPYTGTWDEDLLSQTFWE 1183
Query: 430 KDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCP------- 482
+D+A + + V+ D L W + G ++VKS +++ E + CP
Sbjct: 1184 EDVA--AIKSIPVHVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWES 1241
Query: 483 ---EFWMGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEH 539
+FW +W+L VP KIK + M L R L +G+ T CV ED H
Sbjct: 1242 GDDDFWKKLWKLGVPGKIKH-FLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGH 1300
Query: 540 IFFQCPFSVQVWQ 552
+FF+C +VWQ
Sbjct: 1301 LFFKCKPVKKVWQ 1313
>UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 1382
Score = 130 bits (326), Expect = 1e-28
Identities = 66/149 (44%), Positives = 91/149 (60%)
Query: 55 KTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLSSL 114
K GF+ WI + CV +V ++V +N + P +P RG+RQGDP+SPY+F+LC EGLS L
Sbjct: 610 KLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCL 669
Query: 115 IRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQAI 174
+ E + GI R P ISHLLFADD F KAD Q +KN L +Y +ASGQ I
Sbjct: 670 LHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKI 729
Query: 175 SLPISEIYCNQNVFDALKASITNIIGVQD 203
+L S I+ + DA+K S+ + + V +
Sbjct: 730 NLHKSSIFFGKRCPDAVKISVKSCLQVDN 758
Score = 80.9 bits (198), Expect = 9e-14
Identities = 53/192 (27%), Positives = 93/192 (47%), Gaps = 16/192 (8%)
Query: 373 VGTCATISILDEPWIKDGR-SINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSKD 431
VG TI I + WI R + L + F + V L++++ +CWD I+ +F D
Sbjct: 941 VGDGKTIKIFSDNWIPGFRPQLVTTL--SPFPTDATVSCLMNEDARCWDGDLIRSLFPVD 998
Query: 432 IAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDL-----------MDTTHLR 480
IA ++L + D W +K G+YSV+S + L + M + L
Sbjct: 999 IAKEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLE 1058
Query: 481 CPEFWMGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHI 540
+ W G+W++ P K+K + + E L T QL+ + + CV + ++++ +EH+
Sbjct: 1059 SQKDWKGLWKINAPGKMKIT-LWRAAHECLATGFQLRRRHIPSTDGCV-FCNRDDTVEHV 1116
Query: 541 FFQCPFSVQVWQ 552
F CPF+ Q+W+
Sbjct: 1117 FLFCPFAAQIWE 1128
>UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 129 bits (325), Expect = 2e-28
Identities = 65/141 (46%), Positives = 90/141 (63%)
Query: 41 YTTLKAYH*RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLS 100
Y +K + V+++ GF+++WI + CV TV +S L+N G +P RGLRQGDPLS
Sbjct: 522 YDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLS 581
Query: 101 PYMFILCVEGLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMK 160
PY+FILC E LS L R A+E ++ GI + RG+P ++HLLFADD F K + +
Sbjct: 582 PYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALS 641
Query: 161 NILITYKAASGQAISLPISEI 181
NIL Y+ ASGQ+I+L S I
Sbjct: 642 NILKKYELASGQSINLAKSAI 662
Score = 48.9 bits (115), Expect = 4e-04
Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 6/183 (3%)
Query: 373 VGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSKDI 432
+G +I++ E W+ P + ++ V LI + K W+V I+ +
Sbjct: 861 IGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLSVHDLICHDVKSWNVEAIRKHLPQ-- 918
Query: 433 AYDVLNTSLVNQVT-NDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPEFWMGIWRL 491
D + +N + D L+W K+G Y+ K+ + L + + L + IW++
Sbjct: 919 YEDQIRKITINALPLQDSLVWLPVKSGEYTTKTGYALAKLNSFPASQLDF-NWQKNIWKI 977
Query: 492 KVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPFSVQVW 551
PK+K + + LP L + + C E L H+ CP++ +VW
Sbjct: 978 HTSPKVKH-FLWKAMKGALPVGEALSRRNIEAEVTCKRCGQTESSL-HLMLLCPYAKKVW 1035
Query: 552 QFA 554
+ A
Sbjct: 1036 ELA 1038
>UniRef100_Q7XT98 OSJNBa0052O21.12 protein [Oryza sativa]
Length = 427
Score = 128 bits (321), Expect = 5e-28
Identities = 65/149 (43%), Positives = 91/149 (60%)
Query: 53 MVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLS 112
++K GF + WI + CV +V ++V +N + P P RGLRQGDP+SPY+F+LC EGLS
Sbjct: 17 LLKLGFADPWIQTVMRCVTSVRYAVRINGELTNPVTPSRGLRQGDPISPYLFLLCTEGLS 76
Query: 113 SLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQ 172
S+++ E +I GI R P ISHLLFADD F ++D Q +K+ L Y ASGQ
Sbjct: 77 SILQKKESMGVIQGIRNGRLGPPISHLLFADDSIFFARSDLHSVQGLKDALQAYCKASGQ 136
Query: 173 AISLPISEIYCNQNVFDALKASITNIIGV 201
I+L S I+ QN + +K S+ + V
Sbjct: 137 KINLQKSSIFFGQNCLEDIKNSVKETLQV 165
>UniRef100_Q9ZQF8 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 124 bits (311), Expect = 7e-27
Identities = 62/152 (40%), Positives = 94/152 (61%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
RA+M+K GF +W+ + C+ +V + +L+N G P RG+RQGDP+SP++FILC E
Sbjct: 537 RALMLKMGFAQKWVDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPISPFLFILCTE 596
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
L + ++DAE H I G+ I R +PS SHLLFADD F KAD Q + + +IL Y A
Sbjct: 597 ALVAKLKDAEWHGRIQGLQISRASPSTSHLLFADDSLFFCKADPLQGKEIIDILRLYGEA 656
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNIIGV 201
SGQ ++ S + V ++++ +I +G+
Sbjct: 657 SGQQLNPDKSSVMFGHEVDNSIRNTIKVSLGI 688
Score = 47.8 bits (112), Expect = 8e-04
Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 20/191 (10%)
Query: 373 VGTCATISILDEPWIKD--GRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSK 430
+G+ + ++PWI R L D + V+ LID TK W + +Q +
Sbjct: 806 IGSGMLTRVWEDPWIPSFPPRPAKSILNIRD--THLYVNDLIDPVTKQWKLGRLQELVDP 863
Query: 431 DIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPEFWMG--- 487
+L +D W K+G Y+VKS + DL T C + G
Sbjct: 864 SDIPLILGIRPSRTYKSDDFSWSFTKSGNYTVKSGY-WAARDLSRPT---CDLPFQGPSV 919
Query: 488 ------IWRLKVPPKIKKSHVD-DMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHI 540
+W++K K K H + L L T +L + + C +EE + H+
Sbjct: 920 SALQAQVWKIKTTRKFK--HFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHL 977
Query: 541 FFQCPFSVQVW 551
F CP S Q+W
Sbjct: 978 LFLCPPSRQIW 988
>UniRef100_Q9FYK1 F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 122 bits (306), Expect = 3e-26
Identities = 61/152 (40%), Positives = 92/152 (60%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
R++++ GF+ +W+ + +CV +V +SVL+N+ G I RGLRQGDPLSP++F+LC E
Sbjct: 553 RSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTE 612
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
GL+ L+ A+ + GI P + HLLFADD KA Q+ V++ IL Y A
Sbjct: 613 GLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNA 672
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNIIGV 201
+GQ I+L S I + V + LK +I +G+
Sbjct: 673 TGQTINLNKSSITFGEKVDEQLKGTIRTCLGI 704
Score = 41.6 bits (96), Expect = 0.061
Identities = 45/194 (23%), Positives = 77/194 (39%), Gaps = 48/194 (24%)
Query: 372 QVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVD------SLIDDETKCWDVPFIQ 425
+VG A++ + +PWI +DN A + +N D +L++ T WD +
Sbjct: 888 RVGDGASLFVWIDPWI------DDNGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEEVLH 941
Query: 426 *VFSKDIAYDVLNTSLVNQVTN--DKLIWKAEKNGIYSVKSTFRLCV----EDLMDTTHL 479
+F + D+L + V + D +WK K+G +SVKS + L ++L +
Sbjct: 942 DLFLPE---DILRIKAIKPVISQADFFVWKLNKSGDFSVKSAYWLAYQTKSQNLRSEVSM 998
Query: 480 RCPEFWM--GIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDL 537
+ + +W L+ PKI K + + E+ E
Sbjct: 999 QPSTLGLKTQVWNLQTDPKI-KIFLWKVCGEL------------------------GEST 1033
Query: 538 EHIFFQCPFSVQVW 551
H F CP S Q+W
Sbjct: 1034 NHTLFLCPLSRQIW 1047
>UniRef100_Q9FXJ5 F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 122 bits (306), Expect = 3e-26
Identities = 61/152 (40%), Positives = 92/152 (60%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
R++++ GF+ +W+ + +CV +V +SVL+N+ G I RGLRQGDPLSP++F+LC E
Sbjct: 556 RSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTE 615
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
GL+ L+ A+ + GI P + HLLFADD KA Q+ V++ IL Y A
Sbjct: 616 GLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNA 675
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNIIGV 201
+GQ I+L S I + V + LK +I +G+
Sbjct: 676 TGQTINLNKSSITFGEKVDEQLKGTIRTCLGI 707
Score = 44.3 bits (103), Expect = 0.009
Identities = 42/164 (25%), Positives = 74/164 (44%), Gaps = 24/164 (14%)
Query: 372 QVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVD------SLIDDETKCWDVPFIQ 425
+VG A++ + +PWI +DN A + +N D +L++ T WD +
Sbjct: 891 RVGDGASLFVWIDPWI------DDNGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEEVLH 944
Query: 426 *VFSKDIAYDVLNTSLVNQVTN--DKLIWKAEKNGIYSVKSTFRLCV----EDLMDTTHL 479
+F + D+L + V + D +WK K+G +SVKS + L ++L +
Sbjct: 945 DLFLPE---DILRIKAIKPVISQADFFVWKLNKSGDFSVKSAYWLAYQTKSQNLRSEVSM 1001
Query: 480 RCPEFWM--GIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV 521
+ + +W L+ PKI K + +L ILP L +G+
Sbjct: 1002 QPSTLGLKTQVWNLQTDPKI-KIFLWKVLSGILPVAENLNGRGM 1044
>UniRef100_Q6I5L7 Hypothetical protein OSJNBb0088F07.2 [Oryza sativa]
Length = 1264
Score = 122 bits (305), Expect = 4e-26
Identities = 55/150 (36%), Positives = 91/150 (60%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
R +M++ GF+++W+ + CV +V + + +N + P RGLRQGDPLSPY+FI+C E
Sbjct: 938 RHMMLRLGFHDQWVNLVMKCVTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAE 997
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
GLS+L++ A+ I GI +CR P I+HL FADD + +A + Q ++ +L Y+ A
Sbjct: 998 GLSALLQKAQADGKIEGIKVCRDTPRINHLFFADDSLVLMRAGQNDAQELRRVLNIYEVA 1057
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNII 199
SGQ I+ S + + N + + + + +
Sbjct: 1058 SGQVINKDKSSVLFSPNTLQSDRMEVRSAL 1087
>UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 120 bits (302), Expect = 8e-26
Identities = 60/155 (38%), Positives = 90/155 (57%)
Query: 52 VMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGL 111
VM++ GF RW+ + CV +V + VL+N G P RG+RQGDPLSPY+F+ C E L
Sbjct: 954 VMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVL 1013
Query: 112 SSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASG 171
S+++R AE ++ I G+ I + +ISHLLFADD F +A + + I Y+ ASG
Sbjct: 1014 SNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASG 1073
Query: 172 QAISLPISEIYCNQNVFDALKASITNIIGVQDVLG 206
Q I+ S I Q + + + ++G+ +V G
Sbjct: 1074 QKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRG 1108
Score = 54.3 bits (129), Expect = 9e-06
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 24/196 (12%)
Query: 372 QVGTCATISILDEPWIKD-------GRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFI 424
++G T I ++PW+ G +++++ AD R + + WD
Sbjct: 1269 RLGDGQTTKIWEDPWLPTLPPRPARGPILDEDMKVADLWR---------ENKREWDPVIF 1319
Query: 425 Q*VFSKDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTF------RLCVEDLMDTTH 478
+ V + + + L N D W +N Y+V+S + L E++++
Sbjct: 1320 EGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVATHVNLTEEEIINPLE 1379
Query: 479 LRCPEFWMGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLE 538
P IWRLK+ PKIK + L L T QL+++ + C + +E +
Sbjct: 1380 GDVP-LKQEIWRLKITPKIKH-FIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETIN 1437
Query: 539 HIFFQCPFSVQVWQFA 554
HI F C ++ VW+ A
Sbjct: 1438 HIIFTCSYAQVVWRSA 1453
>UniRef100_O22148 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 120 bits (302), Expect = 8e-26
Identities = 60/147 (40%), Positives = 92/147 (61%), Gaps = 2/147 (1%)
Query: 57 GFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLSSLIR 116
GF + WI + CV++V + VL+N G IP RGLRQGDPLSPY+F++C E L +++
Sbjct: 597 GFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQ 656
Query: 117 DAEEHRIISGISICRGAPSISHLLFADDCFLFFKA-DEGQTQVMKNILITYKAASGQAIS 175
AE+ I+G+ + RGAP ISHLLFADD + K DE Q+++ I+ Y ASGQ ++
Sbjct: 657 SAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIR-IIEEYSLASGQRVN 715
Query: 176 LPISEIYCNQNVFDALKASITNIIGVQ 202
S IY +++ + + + +G++
Sbjct: 716 YLKSSIYFGKHISEERRCLVKRKLGIE 742
Score = 54.7 bits (130), Expect = 7e-06
Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 14/194 (7%)
Query: 371 AQVGTCATISILDEPWI-----KDGRSINDNLPGADFVRN--FCVDSLIDDETKCWDVPF 423
A +G TI++ +PWI K +++ + + + N V L+ + + W+
Sbjct: 924 AVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNL 983
Query: 424 IQ*VFSKDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDL------MDTT 477
+ +F + ++L + T D+ W+ ++G YSVKS + + E + +
Sbjct: 984 VSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVL 1043
Query: 478 HLRCPEFWMGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDL 537
+ IW+L VPPKI + ++ L L + + CV E +
Sbjct: 1044 QPSLDPIFQQIWKLDVPPKI-HHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETV 1102
Query: 538 EHIFFQCPFSVQVW 551
H+ F+CPF+ W
Sbjct: 1103 NHLLFKCPFARLTW 1116
>UniRef100_Q9ZQM0 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1044
Score = 119 bits (298), Expect = 2e-25
Identities = 64/157 (40%), Positives = 91/157 (57%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
+ VM + GF+ WI + C+ TV +S L+N A G P RGLRQGDPLSP++FI+C E
Sbjct: 416 KLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSE 475
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
LS L R A+ + G+ + +G P ++HLLFADD F ++D + IL Y+ A
Sbjct: 476 VLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEA 535
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNIIGVQDVLG 206
SGQ I+ S I ++ D +K I+G+Q V G
Sbjct: 536 SGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGG 572
>UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 119 bits (297), Expect = 3e-25
Identities = 57/156 (36%), Positives = 92/156 (58%)
Query: 51 AVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEG 110
A+M + GF+ +W + C+ T +S+L+N V IP RG+RQGDP+SPY+++LC EG
Sbjct: 46 AIMKQMGFSEKWCNWIMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEG 105
Query: 111 LSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAAS 170
LS+LI+ + + + + G R P+ISHLLFA D +F KA + + N+L Y+ AS
Sbjct: 106 LSALIQASIKAKQLHGFKASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKAS 165
Query: 171 GQAISLPISEIYCNQNVFDALKASITNIIGVQDVLG 206
GQA++ S I + + ++ ++G+ G
Sbjct: 166 GQAVNFQKSAILFGKGLDFRTSEQLSQLLGIYKTEG 201
Score = 50.8 bits (120), Expect = 1e-04
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 447 NDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPE--------FWMGIWRLKVPPKIK 498
ND + W +G YSVKS + L + L H P + IW+ PPKIK
Sbjct: 453 NDAITWIYTHDGNYSVKSGYHL-LRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIK 511
Query: 499 KSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPFSVQVWQFA 554
LPT LK + + C ED+ H+ FQC S ++W+ A
Sbjct: 512 HFWWRSA-HNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQA 566
>UniRef100_O22220 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1094
Score = 117 bits (294), Expect = 7e-25
Identities = 65/158 (41%), Positives = 88/158 (55%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
+ +++ GFN+ WI M CV +V +SVL+N G P RGLRQGDPLSP++F+LC E
Sbjct: 319 KGILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTE 378
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
L ++ AE+ ISGI PS++HLLFADD L KA + + + + L Y
Sbjct: 379 ALIHILNQAEKIGKISGIQFNGTGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHI 438
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNIIGVQDVLGT 207
SGQ I+ S I V + K I N G+Q GT
Sbjct: 439 SGQMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGT 476
Score = 55.5 bits (132), Expect = 4e-06
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 10/151 (6%)
Query: 408 VDSLIDDETKCWDVPFIQ*VFS-KDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTF 466
V LID ++ W++ ++ +F K+I + ++ D W +G+Y+VKS +
Sbjct: 690 VSQLIDPFSRNWNLNMLRDLFPWKEIQIICQQRPMASR--QDSFCWFGTNHGLYTVKSEY 747
Query: 467 RLCVEDLMDTTHLRCPE------FWMGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKG 520
LC + E + IW L PKIK + +L + +L+ +G
Sbjct: 748 DLCSRQVHKQMFKEAEEQPSLNPLFGKIWNLNSAPKIKV-FLWKVLKGAVAVEDRLRTRG 806
Query: 521 V*CPTYCVSYEHQEEDLEHIFFQCPFSVQVW 551
V C + E L HI FQCP + QVW
Sbjct: 807 VLIEDGCSMCPEKNETLNHILFQCPLARQVW 837
>UniRef100_Q75M12 Hypothetical protein P0676G05.2 [Oryza sativa]
Length = 1936
Score = 117 bits (292), Expect = 1e-24
Identities = 58/148 (39%), Positives = 89/148 (59%)
Query: 55 KTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLSSL 114
K GF +RW+ + +CV TV +SV N + F P RGLRQG+PLSP++F+ +GLS L
Sbjct: 1235 KLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADGLSLL 1294
Query: 115 IRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQAI 174
+++ ++ + ICR AP IS+LLFADD LFFKA++ + +V+K +L Y +GQ I
Sbjct: 1295 LKEKVAQNSLTPLKICRQAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQLI 1354
Query: 175 SLPISEIYCNQNVFDALKASITNIIGVQ 202
+ I + ++ I N + V+
Sbjct: 1355 NPAKCSILFGEASPSSVSEDIRNTLQVE 1382
Score = 48.1 bits (113), Expect = 7e-04
Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 372 QVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSKD 431
++G ++ I +PWI S A+ + D + +D T WD I F K
Sbjct: 1565 RIGNGNSVRIWRDPWIPRDLSRRPVSSKANCRLKWVSDLIAEDGT--WDSAKINQYFLKI 1622
Query: 432 IAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVE-----DLMDTTHLRCPEFWM 486
A + + ++ D + W +K G +SV+S ++L ++ + ++ R + W
Sbjct: 1623 DADIIQKICISARLEEDFIAWHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRLNKSWE 1682
Query: 487 GIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPF 546
IW+ VP K+ + + L T K + + C + ++ED H +C
Sbjct: 1683 LIWKCNVPQKV-RIFAWRVASNSLATMENKKKRNLERFDVCGICDREKEDAGHALCRCVH 1741
Query: 547 SVQVW 551
+ +W
Sbjct: 1742 ANSLW 1746
>UniRef100_Q7XCS1 Putative reverse transcriptase [Oryza sativa]
Length = 791
Score = 116 bits (291), Expect = 1e-24
Identities = 59/150 (39%), Positives = 87/150 (57%)
Query: 53 MVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLS 112
M K GF RW+ + CV +V + V N + F P RGLRQGDPLSP++F+ +GLS
Sbjct: 3 MNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLSPFLFLFVADGLS 62
Query: 113 SLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQ 172
L+++ ++ +CR AP ISHLLFADD LFFKA + + +V+K +L +Y +GQ
Sbjct: 63 LLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQ 122
Query: 173 AISLPISEIYCNQNVFDALKASITNIIGVQ 202
I+ I A+ +I+ I+ V+
Sbjct: 123 LINPAKCSILMGGASTPAVSEAISEILQVE 152
Score = 64.7 bits (156), Expect = 7e-09
Identities = 48/185 (25%), Positives = 82/185 (43%), Gaps = 8/185 (4%)
Query: 372 QVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSKD 431
+VG +I I +PW+ S A+ + D + +D + WDVP I F
Sbjct: 335 RVGNGNSIRIWRDPWLPRDHSRRPITGKANCRLKWVSDLITEDGS--WDVPKIHQYFHNL 392
Query: 432 IAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLC-----VEDLMDTTHLRCPEFWM 486
A +LN + ++ D + W +KNG++SV+S +RL +E+ + + W
Sbjct: 393 DAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWE 452
Query: 487 GIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPF 546
IW+ KVP K+ K + L T + K + + C + + ED H +C
Sbjct: 453 MIWKCKVPQKV-KIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQ 511
Query: 547 SVQVW 551
+ Q+W
Sbjct: 512 ASQLW 516
>UniRef100_Q7XLZ5 OSJNBa0086O06.14 protein [Oryza sativa]
Length = 1205
Score = 116 bits (291), Expect = 1e-24
Identities = 69/172 (40%), Positives = 98/172 (56%), Gaps = 8/172 (4%)
Query: 27 DFILLLLLLAKS*NYTTLKAYH*RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGP 86
DF L L L+K+ Y + + K GF N W + CV +V +SV +N + + P
Sbjct: 557 DFCALKLDLSKA--YDRVDWGFLDGALQKLGFGNIWRKWIMSCVTSVRYSVRLNGNMLEP 614
Query: 87 FIPGRGLRQGDPLSPYMFILCVEGLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCF 146
F P RGLR+GDPL+PY+F+ +GLS++++ + R I + +CR AP +SHLLFADD
Sbjct: 615 FYPTRGLREGDPLNPYLFLFIADGLSNILQRRRDERQIQPLKVCRSAPGVSHLLFADDSL 674
Query: 147 LFFKADEGQTQVMKNILITYKAASGQAI-----SLPISEIYCNQNVFDALKA 193
LFFKA+ Q +K L Y+ +GQ I SL S + C Q D +KA
Sbjct: 675 LFFKAEVIQATRIKEALDLYERCTGQLINPKECSLLFSAL-CPQERQDGIKA 725
Score = 51.2 bits (121), Expect = 8e-05
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 9/135 (6%)
Query: 372 QVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSKD 431
++G + I W+ G ++ L + R V LI +TK W+ P I+ + ++
Sbjct: 913 RIGDGSKTKIWRNHWVAHGENLKI-LEKKTWNRVIYVRELIVTDTKTWNEPLIRHIIREE 971
Query: 432 IAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCP--------E 483
A ++L + + D W EK GI+SV+S +RL T+ +
Sbjct: 972 DADEILKIRIPQREEEDFPAWHYEKTGIFSVRSVYRLAWNLARKTSEQASSSSGGADGRK 1031
Query: 484 FWMGIWRLKVPPKIK 498
W +W+ V PK++
Sbjct: 1032 IWDNVWKANVQPKVR 1046
>UniRef100_Q9SHY0 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 116 bits (290), Expect = 2e-24
Identities = 63/157 (40%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Query: 53 MVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLS 112
+V GF+ W+ + CV D S+L N + PF P RGLRQGD LSPY+F+LC+E L
Sbjct: 33 LVAAGFSEVWVTWIMQCVSGPDMSLLWNGEKTTPFKPLRGLRQGDLLSPYLFVLCMERLC 92
Query: 113 SLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQ 172
LI + + I++ RG P +SH+ FADD LF +A Q Q+++ +L + ASGQ
Sbjct: 93 HLIERSINAKQWKPINLSRGGPKLSHICFADDLILFAEASVEQVQIVRRVLEAFCTASGQ 152
Query: 173 AISLPISEIYCNQNVFDALKASITNIIGVQDVLGTCN 209
+SL S+I+ ++NV L I++ G+Q TC+
Sbjct: 153 KVSLEKSKIFFSKNVSRELGKLISDESGIQ---STCD 186
Score = 39.3 bits (90), Expect = 0.30
Identities = 29/132 (21%), Positives = 63/132 (46%), Gaps = 11/132 (8%)
Query: 428 FSKDIAYDVLNTSL------VNQVTN--DKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHL 479
F+K Y NT L ++ VT D+L WK ++G +SV+S + + D + ++
Sbjct: 334 FAKIDPYTTNNTRLELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNM 393
Query: 480 RCPEFWMGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEH 539
F+ +W+++VP ++ K+ + + ++ + T + + + C + E + H
Sbjct: 394 --ASFFNCLWKVRVPERV-KTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLH 450
Query: 540 IFFQCPFSVQVW 551
+ CP + +W
Sbjct: 451 VLRDCPAQLGIW 462
>UniRef100_Q7XGD3 Putative retroelement [Oryza sativa]
Length = 1694
Score = 116 bits (290), Expect = 2e-24
Identities = 60/151 (39%), Positives = 89/151 (58%)
Query: 53 MVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLS 112
MVK GF + W+ + C+ V ++V +N + F P RGLRQGDPLSP++F+ +GLS
Sbjct: 1207 MVKLGFAHCWVKWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLS 1266
Query: 113 SLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQ 172
L+ + + ++ I ICR AP++ HLLFADD LFFKA Q VMK +L TY + +GQ
Sbjct: 1267 FLLEEKVDQGAMNPIHICRHAPAVLHLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQ 1326
Query: 173 AISLPISEIYCNQNVFDALKASITNIIGVQD 203
I+ I Q+ A++ I + + +
Sbjct: 1327 LINPSKCSIMFGQSSPTAVQNQIKQTLQISN 1357
Score = 41.6 bits (96), Expect = 0.061
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 372 QVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSKD 431
++G ++ + +PWI S + R V LID ++ WD I F
Sbjct: 1538 RIGNGKSVRLWRDPWIPRSYSRRP-ISAKRNCRLRWVSDLID-QSGSWDTDKISQHFLPM 1595
Query: 432 IAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLC-----VEDLMDTTHLRCPEFWM 486
A +LN L +++ +D + W +K G +SV+S + L V++ ++ W
Sbjct: 1596 DAEAILNIRLSSRLEDDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWN 1655
Query: 487 GIWRLKVPPKIK 498
+W+ P K+K
Sbjct: 1656 ALWKCNAPQKVK 1667
>UniRef100_Q8S5K1 Putative retroelement [Oryza sativa]
Length = 1888
Score = 116 bits (290), Expect = 2e-24
Identities = 60/151 (39%), Positives = 89/151 (58%)
Query: 53 MVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLS 112
MVK GF + W+ + C+ V ++V +N + F P RGLRQGDPLSP++F+ +GLS
Sbjct: 1164 MVKLGFAHCWVKWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLS 1223
Query: 113 SLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQ 172
L+ + + ++ I ICR AP++ HLLFADD LFFKA Q VMK +L TY + +GQ
Sbjct: 1224 FLLEEKVDQGAMNPIHICRHAPAVLHLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQ 1283
Query: 173 AISLPISEIYCNQNVFDALKASITNIIGVQD 203
I+ I Q+ A++ I + + +
Sbjct: 1284 LINPSKCSIMFGQSSPTAVQNQIKQTLQISN 1314
Score = 39.3 bits (90), Expect = 0.30
Identities = 31/131 (23%), Positives = 57/131 (42%), Gaps = 7/131 (5%)
Query: 372 QVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSKD 431
++G ++ + +PWI S + R V LID ++ WD I F
Sbjct: 1495 RIGNGKSVRLWRDPWIPRSYSRRP-ISAKRNCRLRWVSDLID-QSGSWDTDKISQHFLPM 1552
Query: 432 IAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLC-----VEDLMDTTHLRCPEFWM 486
A +LN L +++ +D + W +K G +SV+S + L V++ ++ W
Sbjct: 1553 DAEAILNIRLSSRLEDDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWN 1612
Query: 487 GIWRLKVPPKI 497
+W+ P K+
Sbjct: 1613 ALWKCNAPQKL 1623
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.343 0.152 0.517
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 861,675,007
Number of Sequences: 2790947
Number of extensions: 34124399
Number of successful extensions: 112210
Number of sequences better than 10.0: 496
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 242
Number of HSP's that attempted gapping in prelim test: 111505
Number of HSP's gapped (non-prelim): 652
length of query: 555
length of database: 848,049,833
effective HSP length: 133
effective length of query: 422
effective length of database: 476,853,882
effective search space: 201232338204
effective search space used: 201232338204
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 77 (34.3 bits)
Medicago: description of AC144514.8