BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC119419.1 + phase: 0 /partial
(107 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_P46298 40S ribosomal protein S13 [Pisum sativum] 209 2e-53
UniRef100_Q9MAV9 Cytoplasmic ribosomal protein S13 [Panax ginseng] 208 3e-53
UniRef100_P59224 40S ribosomal protein S13-2 [Arabidopsis thaliana] 207 4e-53
UniRef100_P59223 40S ribosomal protein S13-1 [Arabidopsis thaliana] 207 4e-53
UniRef100_P62302 40S ribosomal protein S13 [Glycine max] 207 6e-53
UniRef100_Q6L4B2 Cytoplasmic ribosomal protein S13 [Solanum demi... 206 8e-53
UniRef100_Q5XUU9 Cytoplasmatic ribosomal protein S13 [Triticum a... 184 4e-46
UniRef100_Q69UI2 Putative 40S RIBOSOMAL PROTEIN S13 [Oryza sativa] 183 1e-45
UniRef100_Q69UI1 Putative 40S RIBOSOMAL PROTEIN S13 [Oryza sativa] 183 1e-45
UniRef100_Q05761 40S ribosomal protein S13 [Zea mays] 182 1e-45
UniRef100_UPI000021A959 UPI000021A959 UniRef100 entry 181 4e-45
UniRef100_Q7SDH0 Hypothetical protein [Neurospora crassa] 180 8e-45
UniRef100_UPI00003AEF8F UPI00003AEF8F UniRef100 entry 179 1e-44
UniRef100_P62277 40S ribosomal protein S13 [Homo sapiens] 179 1e-44
UniRef100_P49393 40S ribosomal protein S13 [Xenopus laevis] 179 1e-44
UniRef100_Q9WVH0 40S ribosomal protein S13 [Cricetulus griseus] 179 1e-44
UniRef100_O77303 40S ribosomal protein S13 [Lumbricus rubellus] 179 2e-44
UniRef100_Q6C242 Yarrowia lipolytica chromosome F of strain CLIB... 178 3e-44
UniRef100_P62299 40S ribosomal protein S13 [Brugia pahangi] 177 4e-44
UniRef100_Q7SZT6 Rps13-prov protein [Xenopus laevis] 177 7e-44
>UniRef100_P46298 40S ribosomal protein S13 [Pisum sativum]
Length = 151
Score = 209 bits (531), Expect = 2e-53
Identities = 104/107 (97%), Positives = 106/107 (98%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
VDETICKFAKKGLTPSQIGVILRDSHGIAQVK+VTG+KILRILKAHGLAPEIPEDLYHLI
Sbjct: 33 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAVSIRKHLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 93 KKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139
>UniRef100_Q9MAV9 Cytoplasmic ribosomal protein S13 [Panax ginseng]
Length = 151
Score = 208 bits (529), Expect = 3e-53
Identities = 102/107 (95%), Positives = 106/107 (98%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
VD+ ICKFAKKGLTPSQIGVILRDSHGIAQVK+VTG+KILRILKAHGLAPEIPEDLYHLI
Sbjct: 33 VDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 93 KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139
>UniRef100_P59224 40S ribosomal protein S13-2 [Arabidopsis thaliana]
Length = 151
Score = 207 bits (528), Expect = 4e-53
Identities = 102/107 (95%), Positives = 106/107 (98%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
VDE+ICKFAKKGLTPSQIGVILRDSHGI QVK+VTG+KILRILKAHGLAPEIPEDLYHLI
Sbjct: 33 VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 93 KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139
>UniRef100_P59223 40S ribosomal protein S13-1 [Arabidopsis thaliana]
Length = 151
Score = 207 bits (528), Expect = 4e-53
Identities = 102/107 (95%), Positives = 106/107 (98%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
VDE+ICKFAKKGLTPSQIGVILRDSHGI QVK+VTG+KILRILKAHGLAPEIPEDLYHLI
Sbjct: 33 VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 93 KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139
>UniRef100_P62302 40S ribosomal protein S13 [Glycine max]
Length = 151
Score = 207 bits (526), Expect = 6e-53
Identities = 102/107 (95%), Positives = 105/107 (97%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V+E ICKFAKKGLTPSQIGVILRDSHGIAQV +VTG+KILRILKAHGLAPEIPEDLYHLI
Sbjct: 33 VEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 93 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139
>UniRef100_Q6L4B2 Cytoplasmic ribosomal protein S13 [Solanum demissum]
Length = 151
Score = 206 bits (525), Expect = 8e-53
Identities = 101/107 (94%), Positives = 106/107 (98%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V++ ICKFAKKGLTPSQIGVILRDSHGIAQVK+VTG+KILRILKAHGLAPEIPEDLYHLI
Sbjct: 33 VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 93 KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139
>UniRef100_Q5XUU9 Cytoplasmatic ribosomal protein S13 [Triticum aestivum]
Length = 151
Score = 184 bits (467), Expect = 4e-46
Identities = 92/107 (85%), Positives = 97/107 (89%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
VDE I K AKKG PSQIGV+LRD HGI VK+VTG+KILRILKAHGLAPEIPEDLY LI
Sbjct: 33 VDELITKAAKKGQMPSQIGVLLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP W
Sbjct: 93 KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTW 139
>UniRef100_Q69UI2 Putative 40S RIBOSOMAL PROTEIN S13 [Oryza sativa]
Length = 156
Score = 183 bits (464), Expect = 1e-45
Identities = 91/107 (85%), Positives = 97/107 (90%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V+E I K AKKG PSQIGV+LRD HGI VK+VTG+KILRILKAHGLAPEIPEDLY LI
Sbjct: 33 VEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP W
Sbjct: 93 KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTW 139
>UniRef100_Q69UI1 Putative 40S RIBOSOMAL PROTEIN S13 [Oryza sativa]
Length = 151
Score = 183 bits (464), Expect = 1e-45
Identities = 91/107 (85%), Positives = 97/107 (90%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V+E I K AKKG PSQIGV+LRD HGI VK+VTG+KILRILKAHGLAPEIPEDLY LI
Sbjct: 33 VEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP W
Sbjct: 93 KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTW 139
>UniRef100_Q05761 40S ribosomal protein S13 [Zea mays]
Length = 151
Score = 182 bits (463), Expect = 1e-45
Identities = 91/107 (85%), Positives = 97/107 (90%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V+E I K AKKG PSQIGV+LRD HGI VK+VTG+KILRILKAHGLAPEIPEDLY LI
Sbjct: 33 VEEMITKAAKKGQMPSQIGVLLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP W
Sbjct: 93 KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTW 139
>UniRef100_UPI000021A959 UPI000021A959 UniRef100 entry
Length = 151
Score = 181 bits (459), Expect = 4e-45
Identities = 89/107 (83%), Positives = 96/107 (89%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E ICK A+KG TPSQIGV+LRDSHGIAQVK VTGNKILRILK++GLAP+IPEDLY LI
Sbjct: 33 VVEQICKLARKGATPSQIGVVLRDSHGIAQVKIVTGNKILRILKSNGLAPDIPEDLYMLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAVS+RKHLERNRKDKDSKFRLIL+ESRIHRLARYYK LPP W
Sbjct: 93 KKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYKTVGVLPPTW 139
>UniRef100_Q7SDH0 Hypothetical protein [Neurospora crassa]
Length = 151
Score = 180 bits (456), Expect = 8e-45
Identities = 88/107 (82%), Positives = 96/107 (89%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V + ICK AKKG TPSQIGVILRDSHGIAQVK VTGNKILRILK++GLAP++PEDLY LI
Sbjct: 33 VVDQICKLAKKGATPSQIGVILRDSHGIAQVKVVTGNKILRILKSNGLAPDLPEDLYMLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV++RKHLERNRKDKDSKFRLIL+ESRIHRLARYYK LPP W
Sbjct: 93 KKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYKTVGVLPPTW 139
>UniRef100_UPI00003AEF8F UPI00003AEF8F UniRef100 entry
Length = 127
Score = 179 bits (454), Expect = 1e-44
Identities = 87/107 (81%), Positives = 97/107 (90%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K AKKGLTPSQIGVILRDSHG+AQV+ VTGNKILRILK+ GLAP++PEDLYHLI
Sbjct: 9 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLI 68
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK + LPP W
Sbjct: 69 KKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNW 115
>UniRef100_P62277 40S ribosomal protein S13 [Homo sapiens]
Length = 150
Score = 179 bits (454), Expect = 1e-44
Identities = 87/107 (81%), Positives = 97/107 (90%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K AKKGLTPSQIGVILRDSHG+AQV+ VTGNKILRILK+ GLAP++PEDLYHLI
Sbjct: 32 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK + LPP W
Sbjct: 92 KKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNW 138
>UniRef100_P49393 40S ribosomal protein S13 [Xenopus laevis]
Length = 150
Score = 179 bits (454), Expect = 1e-44
Identities = 87/107 (81%), Positives = 97/107 (90%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K AKKGLTPSQIGVILRDSHG+AQV+ VTGNKILRILK+ GLAP++PEDLYHLI
Sbjct: 32 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK + LPP W
Sbjct: 92 KKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTRRVLPPNW 138
>UniRef100_Q9WVH0 40S ribosomal protein S13 [Cricetulus griseus]
Length = 150
Score = 179 bits (454), Expect = 1e-44
Identities = 87/107 (81%), Positives = 97/107 (90%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K AKKGLTPSQIGVILRDSHG+AQV+ VTGNKILRILK+ GLAP++PEDLYHLI
Sbjct: 32 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK + LPP W
Sbjct: 92 KKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNW 138
>UniRef100_O77303 40S ribosomal protein S13 [Lumbricus rubellus]
Length = 150
Score = 179 bits (453), Expect = 2e-44
Identities = 91/107 (85%), Positives = 94/107 (87%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K AKKGLTPSQIGVILRDSHG+AQ + V GNKILRILKA GLAP IPEDLY LI
Sbjct: 32 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQTRHVAGNKILRILKAKGLAPTIPEDLYFLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK K LPPVW
Sbjct: 92 KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKTRKVLPPVW 138
>UniRef100_Q6C242 Yarrowia lipolytica chromosome F of strain CLIB99 of Yarrowia
lipolytica [Yarrowia lipolytica]
Length = 151
Score = 178 bits (451), Expect = 3e-44
Identities = 85/107 (79%), Positives = 96/107 (89%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K+A+KGLTPSQIGV+LRDSHG++QVK TGNKILRILK++GLAPEIPEDLYHLI
Sbjct: 33 VVEQIIKYARKGLTPSQIGVLLRDSHGVSQVKVATGNKILRILKSNGLAPEIPEDLYHLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAVS+RKHL++NRKD DSKFRLIL+ESRIHRLARYYK LPP W
Sbjct: 93 KKAVSVRKHLDKNRKDADSKFRLILIESRIHRLARYYKSVGVLPPTW 139
>UniRef100_P62299 40S ribosomal protein S13 [Brugia pahangi]
Length = 150
Score = 177 bits (450), Expect = 4e-44
Identities = 86/107 (80%), Positives = 96/107 (89%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E + + AKKGL PSQIGVILRDSHG+AQV+ VTGNKI+RILKA G+APEIPEDLYHLI
Sbjct: 32 VQEQVTRLAKKGLRPSQIGVILRDSHGVAQVRRVTGNKIVRILKAKGMAPEIPEDLYHLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV+IRKHLERNRKDKDSK+RLILVESRIHRLARYYK ++LP W
Sbjct: 92 KKAVNIRKHLERNRKDKDSKYRLILVESRIHRLARYYKTKRQLPATW 138
>UniRef100_Q7SZT6 Rps13-prov protein [Xenopus laevis]
Length = 151
Score = 177 bits (448), Expect = 7e-44
Identities = 86/107 (80%), Positives = 96/107 (89%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K AKKGLTPSQIGVILRDSHG+AQV+ VTGNKILRILK+ LAP++PEDLYHLI
Sbjct: 33 VKEQIFKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKALAPDLPEDLYHLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK + LPP W
Sbjct: 93 KKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTRRVLPPNW 139
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.322 0.139 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,965,741
Number of Sequences: 2790947
Number of extensions: 6094229
Number of successful extensions: 18393
Number of sequences better than 10.0: 169
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 18235
Number of HSP's gapped (non-prelim): 169
length of query: 107
length of database: 848,049,833
effective HSP length: 83
effective length of query: 24
effective length of database: 616,401,232
effective search space: 14793629568
effective search space used: 14793629568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC119419.1