BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148758.1 - phase: 0 /pseudo
         (143 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ENV_HV1ND (P18799) Envelope polyprotein GP160 precursor [Contain...    29  3.9
CG2B_ASTPE (P18063) G2/mitotic-specific cyclin B                       29  3.9
FXL3_MOUSE (Q8C4V4) F-box/LRR-repeat protein 3 (F-box/LRR-repeat...    28  5.1
FXL3_HUMAN (Q9UKT7) F-box/LRR-repeat protein 3 (F-box/LRR-repeat...    28  5.1
ARLY_CHLTE (Q8KDJ5) Argininosuccinate lyase (EC 4.3.2.1) (Argino...    28  5.1
RLUD_PASMU (Q9CKA6) Ribosomal large subunit pseudouridine syntha...    28  6.7
RLUD_HAEIN (P44445) Ribosomal large subunit pseudouridine syntha...    28  6.7
RLUD_HAEDU (Q9L7A7) Ribosomal large subunit pseudouridine syntha...    28  6.7
ARLY_LACPL (P59617) Argininosuccinate lyase (EC 4.3.2.1) (Argino...    28  6.7
ENV_HV1Z6 (P04580) Envelope polyprotein GP160 precursor [Contain...    28  8.7
ENV_HV1Z2 (P12487) Envelope polyprotein GP160 precursor [Contain...    28  8.7
ARLY_RHOFA (Q93JQ9) Argininosuccinate lyase (EC 4.3.2.1) (Argino...    28  8.7

>ENV_HV1ND (P18799) Envelope polyprotein GP160 precursor [Contains:
           Exterior membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 846

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 38  RFSILGPKLYINTTPVDVGNRPVTGLRLQLEGS-RSNRLAIHLQHLASLPKSLPLADNAN 96
           +F+  GP   ++T     G RPV   +L L GS     + I  ++L +  K++ +  NA+
Sbjct: 227 KFNGTGPCSNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIIIRSENLTNNVKTIIVQLNAS 286

Query: 97  AYLSC 101
             ++C
Sbjct: 287 IVINC 291


>CG2B_ASTPE (P18063) G2/mitotic-specific cyclin B
          Length = 394

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 33  VNTWLRFSILGPKLYINTTPVD--VGNRPVTGLRLQLEGSRSNRLAIHLQHLASLPKSLP 90
           V   LRF +L   L++    +D  +    V+  +LQL G  S  +A + +  A +   + 
Sbjct: 184 VQVHLRFHLLQETLFLTIQILDRYLEGASVSKTKLQLVGVTSMLIAAYEEMYAEIGDFVY 243

Query: 91  LADNANAYLSCDSYSCTFHKKVKRNCFSYVC 121
           + DNA +     +  C   +K+  N    +C
Sbjct: 244 ITDNAYSKAQIRAMECNILRKLDFNLGKPLC 274


>FXL3_MOUSE (Q8C4V4) F-box/LRR-repeat protein 3 (F-box/LRR-repeat
           protein 3A) (F-box and leucine-rich repeat protein 3A)
          Length = 428

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 87  KSLPLADNANAYLSCDSYSCTFHKKVKRNCFSYVCTAPVES 127
           K LPL D A+A   C +++  FH      CF +    P  S
Sbjct: 49  KYLPLLDRAHASQVCRNWNQVFHMPDLWRCFEFELNQPATS 89


>FXL3_HUMAN (Q9UKT7) F-box/LRR-repeat protein 3 (F-box/LRR-repeat
           protein 3A) (F-box and leucine-rich repeat protein 3A)
          Length = 428

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 87  KSLPLADNANAYLSCDSYSCTFHKKVKRNCFSYVCTAPVES 127
           K LPL D A+A   C +++  FH      CF +    P  S
Sbjct: 49  KYLPLLDRAHASQVCRNWNQVFHMPDLWRCFEFELNQPATS 89


>ARLY_CHLTE (Q8KDJ5) Argininosuccinate lyase (EC 4.3.2.1)
           (Arginosuccinase) (ASAL)
          Length = 463

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 2   EDLHRFLEFQLPRQWAPVLGEIHLGSYRKHQVNT 35
           ED+H  +E +L     P  G++H G  R  QV T
Sbjct: 89  EDIHTVIENRLKELIGPTAGKLHSGRSRNDQVAT 122


>RLUD_PASMU (Q9CKA6) Ribosomal large subunit pseudouridine synthase
           D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
           hydrolyase)
          Length = 324

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 11/26 (42%), Positives = 19/26 (72%)

Query: 58  RPVTGLRLQLEGSRSNRLAIHLQHLA 83
           R  T LRL+LE  R++++ +H+ H+A
Sbjct: 218 RNYTRLRLRLETGRTHQIRVHMAHIA 243


>RLUD_HAEIN (P44445) Ribosomal large subunit pseudouridine synthase
           D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
           hydrolyase)
          Length = 324

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 11/26 (42%), Positives = 19/26 (72%)

Query: 58  RPVTGLRLQLEGSRSNRLAIHLQHLA 83
           R  T LRL+LE  R++++ +H+ H+A
Sbjct: 218 RNYTRLRLRLETGRTHQIRVHMAHIA 243


>RLUD_HAEDU (Q9L7A7) Ribosomal large subunit pseudouridine synthase
           D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
           hydrolyase)
          Length = 325

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 11/26 (42%), Positives = 19/26 (72%)

Query: 58  RPVTGLRLQLEGSRSNRLAIHLQHLA 83
           R  T LRL+LE  R++++ +H+ H+A
Sbjct: 219 RNYTRLRLRLETGRTHQIRVHMAHIA 244


>ARLY_LACPL (P59617) Argininosuccinate lyase (EC 4.3.2.1)
           (Arginosuccinase) (ASAL)
          Length = 467

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 2   EDLHRFLEFQLPRQWAPVLGEIHLGSYRKHQVNT 35
           ED+H  +E  L  +  PV G++H    R  QV T
Sbjct: 84  EDIHMNIESLLTEEIGPVAGKLHTARSRNDQVAT 117


>ENV_HV1Z6 (P04580) Envelope polyprotein GP160 precursor [Contains:
           Exterior membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 855

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 38  RFSILGPKLYINTTPVDVGNRPVTGLRLQLEGS-RSNRLAIHLQHLASLPKSLPLADNAN 96
           RF+  GP   ++T     G RPV   +L L GS     + I  ++L +  K + +  N +
Sbjct: 234 RFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIIIRSENLTNNAKIIIVQLNES 293

Query: 97  AYLSC 101
             ++C
Sbjct: 294 VAINC 298


>ENV_HV1Z2 (P12487) Envelope polyprotein GP160 precursor [Contains:
           Exterior membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 853

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 38  RFSILGPKLYINTTPVDVGNRPVTGLRLQLEGS-RSNRLAIHLQHLASLPKSLPLADNAN 96
           RF+  GP   ++T     G RPV   +L L GS     + I  ++L +  K + +  N +
Sbjct: 233 RFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIIIRSENLTNNAKIIIVQLNES 292

Query: 97  AYLSC 101
             ++C
Sbjct: 293 VAINC 297


>ARLY_RHOFA (Q93JQ9) Argininosuccinate lyase (EC 4.3.2.1)
           (Arginosuccinase) (ASAL)
          Length = 505

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/34 (41%), Positives = 17/34 (49%)

Query: 2   EDLHRFLEFQLPRQWAPVLGEIHLGSYRKHQVNT 35
           ED+H   EF L  +  PV G +H    R  QV T
Sbjct: 83  EDVHLNTEFMLIERIGPVGGRMHTARSRNDQVQT 116


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.321    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,236,484
Number of Sequences: 164201
Number of extensions: 682294
Number of successful extensions: 1381
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1373
Number of HSP's gapped (non-prelim): 12
length of query: 143
length of database: 59,974,054
effective HSP length: 99
effective length of query: 44
effective length of database: 43,718,155
effective search space: 1923598820
effective search space used: 1923598820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)