BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147472.6 + phase: 0 /pseudo
(180 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
COXZ_RECAM (O21243) Cytochrome c oxidase assembly protein ctaG 186 2e-47
COXZ_HUMAN (Q9Y6N1) Cytochrome c oxidase assembly protein COX11,... 168 5e-42
COXZ_YEAST (P19516) Cytochrome c oxidase assembly protein COX11,... 162 4e-40
COXZ_RHIME (Q92RG6) Cytochrome C oxidase assembly protein ctaG 155 5e-38
COXZ_RICCN (Q92IL2) Cytochrome C oxidase assembly protein ctaG 154 1e-37
COXZ_RICPR (Q9ZDM3) Cytochrome c oxidase assembly protein ctaG 153 2e-37
COXZ_RHILO (Q985W8) Cytochrome C oxidase assembly protein ctaG 151 9e-37
COXZ_BRUSU (Q8G261) Cytochrome C oxidase assembly protein ctaG 145 4e-35
COXZ_BRUME (Q8YFQ7) Cytochrome C oxidase assembly protein ctaG 145 4e-35
COXZ_BRAJA (P56939) Cytochrome c oxidase assembly protein ctaG 145 4e-35
COXZ_RHOSH (P56940) Cytochrome c oxidase assembly protein ctaG 142 5e-34
COXZ_PARDE (P08303) Cytochrome c oxidase assembly protein ctaG 134 1e-31
COXZ_AGRT5 (Q8UHB2) Cytochrome C oxidase assembly protein ctaG 132 4e-31
COXZ_COWRU (Q04302) Cytochrome c oxidase assembly protein ctaG 124 2e-28
G116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 prec... 31 1.4
Y795_METJA (Q58205) Hypothetical protein MJ0795 31 1.8
TFS2_SCHPO (P49373) Transcription elongation factor S-II (TFIIS) 30 3.9
NO56_HUMAN (O00567) Nucleolar protein Nop56 (Nucleolar protein 5A) 29 5.2
SYW_THEVO (Q978Y8) Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tr... 29 6.7
ENV_HV1JR (P20871) Envelope polyprotein GP160 precursor [Contain... 29 6.7
>COXZ_RECAM (O21243) Cytochrome c oxidase assembly protein ctaG
Length = 182
Score = 186 bits (473), Expect = 2e-47
Identities = 89/156 (57%), Positives = 111/156 (71%), Gaps = 2/156 (1%)
Query: 19 FASPPLYRTFCQATSYDGTVTRRERVEEKIARHDSNQTVTSREIVVQFNADISDGMPWKF 78
+ S PLYR FCQ T + GT + + + D Q +R I V+FN D+SD MPWKF
Sbjct: 24 YGSVPLYRIFCQVTGFGGTTQVADLESDILTLKDEQQE--NRIITVRFNGDVSDTMPWKF 81
Query: 79 LPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGVYFNKIQCFCFEEQRLL 138
P Q+E++V GE+ALAFY+ EN + + I G+STYNV P + G+YFNKIQCFCFEEQRL
Sbjct: 82 HPIQQEIKVMVGETALAFYSAENPTDSSIIGISTYNVNPQQAGIYFNKIQCFCFEEQRLK 141
Query: 139 PGEKIDMPVFFYIDPEIEDDPKMNGINNIILSYTFF 174
P E IDMPVFF+IDP I DDPKM+ I++I LSYTFF
Sbjct: 142 PHETIDMPVFFFIDPAILDDPKMSDIDSITLSYTFF 177
>COXZ_HUMAN (Q9Y6N1) Cytochrome c oxidase assembly protein COX11,
mitochondrial precursor
Length = 276
Score = 168 bits (426), Expect = 5e-42
Identities = 84/169 (49%), Positives = 111/169 (64%), Gaps = 5/169 (2%)
Query: 10 AFGMGVL-TIFASPPLYRTFCQATSYDGTVTRRERVEEKIARHDSNQTVTSREIVVQFNA 68
A +G+L +A+ PLYR +CQ T G+ +KI ++ V R I + FNA
Sbjct: 101 AVAVGMLGASYAAVPLYRLYCQTTGLGGSAVAGH-ASDKI---ENMVPVKDRIIKISFNA 156
Query: 69 DISDGMPWKFLPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGVYFNKIQ 128
D+ + W F P Q E+ V PGE+ALAFY V+N + P+ G+STYN+ P + G YFNKIQ
Sbjct: 157 DVHASLQWNFRPQQTEIYVVPGETALAFYRVKNPTDKPVIGISTYNIVPFEAGQYFNKIQ 216
Query: 129 CFCFEEQRLLPGEKIDMPVFFYIDPEIEDDPKMNGINNIILSYTFFKDK 177
CFCFEEQRL P E++DMPVFFYIDPE +DP+M ++ I LSYTFF+ K
Sbjct: 217 CFCFEEQRLNPQEEVDMPVFFYIDPEFAEDPRMIKVDLITLSYTFFEAK 265
>COXZ_YEAST (P19516) Cytochrome c oxidase assembly protein COX11,
mitochondrial precursor
Length = 300
Score = 162 bits (410), Expect = 4e-40
Identities = 78/159 (49%), Positives = 106/159 (66%), Gaps = 7/159 (4%)
Query: 19 FASPPLYRTFCQATSYDGT--VTRRERVEEKIARHDSNQTVTSREIVVQFNADISDGMPW 76
+A+ PLYR C T + G RR+ ++K+ D T + I + F +++S +PW
Sbjct: 101 YAAVPLYRAICARTGFGGIPITDRRKFTDDKLIPVD-----TEKRIRISFTSEVSQILPW 155
Query: 77 KFLPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGVYFNKIQCFCFEEQR 136
KF+P QREV V PGE+ALAFY +N S I G++TY++ P + YFNKIQCFCFEEQ+
Sbjct: 156 KFVPQQREVYVLPGETALAFYKAKNYSDKDIIGMATYSIAPGEAAQYFNKIQCFCFEEQK 215
Query: 137 LLPGEKIDMPVFFYIDPEIEDDPKMNGINNIILSYTFFK 175
L GE+IDMPVFF+IDP+ DP M I++IIL YTFF+
Sbjct: 216 LAAGEEIDMPVFFFIDPDFASDPAMRNIDDIILHYTFFR 254
>COXZ_RHIME (Q92RG6) Cytochrome C oxidase assembly protein ctaG
Length = 198
Score = 155 bits (392), Expect = 5e-38
Identities = 76/175 (43%), Positives = 112/175 (63%), Gaps = 10/175 (5%)
Query: 7 TGLAFGMGVLTI-FASPPLYRTFCQATSYDGTVTRRERVEEKIARHDSNQTVTSREIVVQ 65
T LAF G++ + +A+ PLY FC+ T Y+GT R E+ + I +I V
Sbjct: 20 TCLAFVAGMIGMAYAAVPLYDMFCRVTGYNGTTQRVEQASDLIL---------DEKIKVT 70
Query: 66 FNADISDGMPWKFLPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGVYFN 125
F+A+++ G+PW+F+P QR++ V+ GE+ Y +N +STP TG +T+NVTPM G YFN
Sbjct: 71 FDANVAAGLPWEFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFN 130
Query: 126 KIQCFCFEEQRLLPGEKIDMPVFFYIDPEIEDDPKMNGINNIILSYTFFKDKVSE 180
K+QCFCF E L PGE+++MPV F++DPEI + GI + LSYTF+ + S+
Sbjct: 131 KVQCFCFTETTLEPGEEMEMPVVFFVDPEIVKPVETQGIKTLTLSYTFYPREPSK 185
>COXZ_RICCN (Q92IL2) Cytochrome C oxidase assembly protein ctaG
Length = 188
Score = 154 bits (388), Expect = 1e-37
Identities = 79/170 (46%), Positives = 106/170 (61%), Gaps = 8/170 (4%)
Query: 6 LTGLAFGMGVLTIFASPPLYRTFCQATSYDGTVTRRERVEEKIARHDSNQTVTSREIVVQ 65
L GL M VL FAS P+Y FC+ T Y GT T +E V ++ ++ I+++
Sbjct: 13 LLGLIISM-VLLSFASVPIYNLFCKVTGYGGT-TAKETVSVY------SKVKGTKPIIIE 64
Query: 66 FNADISDGMPWKFLPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGVYFN 125
F+A++ +PW+F+P Q+ V++ PG++ L FY EN S I G S YNVTP K G YF
Sbjct: 65 FDANVDKDLPWRFIPRQQRVQIVPGQNTLVFYETENLSDNDIIGTSVYNVTPNKAGKYFV 124
Query: 126 KIQCFCFEEQRLLPGEKIDMPVFFYIDPEIEDDPKMNGINNIILSYTFFK 175
KI CFCFEEQ L GE++ MPV FYID + E DP+M I + LSY+FFK
Sbjct: 125 KIHCFCFEEQLLKAGERVLMPVTFYIDKDFELDPEMQDIKVLTLSYSFFK 174
>COXZ_RICPR (Q9ZDM3) Cytochrome c oxidase assembly protein ctaG
Length = 178
Score = 153 bits (386), Expect = 2e-37
Identities = 78/170 (45%), Positives = 107/170 (62%), Gaps = 8/170 (4%)
Query: 6 LTGLAFGMGVLTIFASPPLYRTFCQATSYDGTVTRRERVEEKIARHDSNQTVTSREIVVQ 65
L GL M VL FAS P+Y FC+ T Y GT ++E ++ + ++ ++ I+++
Sbjct: 13 LLGLMMSM-VLLSFASVPIYNLFCKVTGYGGTT-----IKETVSVY--SKVKGTKAIIIE 64
Query: 66 FNADISDGMPWKFLPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGVYFN 125
F+A++ +PW F+P Q+ V++ PG++ L FY EN S+ I G S YNVTP K G YF
Sbjct: 65 FDANVDPNLPWHFIPRQKRVQIVPGQNTLVFYEAENLSNKDIIGTSIYNVTPNKAGKYFV 124
Query: 126 KIQCFCFEEQRLLPGEKIDMPVFFYIDPEIEDDPKMNGINNIILSYTFFK 175
KI CFCFEEQ L EK+ MPV FYID + E DP+M I I LSY+FFK
Sbjct: 125 KIHCFCFEEQLLKAREKVLMPVTFYIDNDFERDPEMENIKVITLSYSFFK 174
>COXZ_RHILO (Q985W8) Cytochrome C oxidase assembly protein ctaG
Length = 206
Score = 151 bits (381), Expect = 9e-37
Identities = 77/167 (46%), Positives = 109/167 (65%), Gaps = 10/167 (5%)
Query: 9 LAFGMGVLTI-FASPPLYRTFCQATSYDGTVTRRERVEEKIARHDSNQTVTSREIVVQFN 67
LAF G++ + +A+ PLY+ FCQAT Y GT +RVE++ A V REI V+F+
Sbjct: 19 LAFFTGMIGMAYAAVPLYKMFCQATGYGGTT---QRVEKQYAGR-----VLDREITVRFD 70
Query: 68 ADISDGMPWKFLPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGVYFNKI 127
A+I+ G+PW+F P QR + +K GE+ A Y N+ P+TG +T+NV P G YFNK+
Sbjct: 71 ANIA-GVPWEFQPVQRSMTMKIGETVQAHYQATNKFDRPVTGRATFNVQPELAGPYFNKV 129
Query: 128 QCFCFEEQRLLPGEKIDMPVFFYIDPEIEDDPKMNGINNIILSYTFF 174
+CFCF + L PGE +DMPV FY+DP+I + P++ + I LSYT F
Sbjct: 130 ECFCFTDTSLKPGETVDMPVLFYVDPDIVNVPELKDVKTITLSYTMF 176
>COXZ_BRUSU (Q8G261) Cytochrome C oxidase assembly protein ctaG
Length = 201
Score = 145 bits (367), Expect = 4e-35
Identities = 70/171 (40%), Positives = 101/171 (58%), Gaps = 17/171 (9%)
Query: 4 MCLTGLAFGMGVLTIFASPPLYRTFCQATSYDGTVTRRERVEEKIARHDSNQTVTSREIV 63
+C+ G A+ AS PLYR FCQ T Y GT R E+ + T+ + I
Sbjct: 27 VCMIGAAY--------ASVPLYRIFCQVTGYGGTTQRVEQYSD---------TILDKTIK 69
Query: 64 VQFNADISDGMPWKFLPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGVY 123
V+F+A+I++G+PW F P QREV V+ GE+ + Y N G +++NV P + G Y
Sbjct: 70 VRFDANIANGLPWDFKPMQREVTVRIGETTMIKYEAHNLFGEETYGRASFNVAPGRAGAY 129
Query: 124 FNKIQCFCFEEQRLLPGEKIDMPVFFYIDPEIEDDPKMNGINNIILSYTFF 174
FNK++CFCF + L PGE +++PV F++DPE +DP + + I LSYTFF
Sbjct: 130 FNKVECFCFTDNTLKPGEDLELPVVFFVDPEFVNDPDLKDVKTITLSYTFF 180
>COXZ_BRUME (Q8YFQ7) Cytochrome C oxidase assembly protein ctaG
Length = 201
Score = 145 bits (367), Expect = 4e-35
Identities = 70/171 (40%), Positives = 101/171 (58%), Gaps = 17/171 (9%)
Query: 4 MCLTGLAFGMGVLTIFASPPLYRTFCQATSYDGTVTRRERVEEKIARHDSNQTVTSREIV 63
+C+ G A+ AS PLYR FCQ T Y GT R E+ + T+ + I
Sbjct: 27 VCMIGAAY--------ASVPLYRIFCQVTGYGGTTQRVEQYSD---------TILDKTIK 69
Query: 64 VQFNADISDGMPWKFLPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGVY 123
V+F+A+I++G+PW F P QREV V+ GE+ + Y N G +++NV P + G Y
Sbjct: 70 VRFDANIANGLPWDFKPMQREVTVRIGETTMIKYEAHNLFGEETYGRASFNVAPGRAGAY 129
Query: 124 FNKIQCFCFEEQRLLPGEKIDMPVFFYIDPEIEDDPKMNGINNIILSYTFF 174
FNK++CFCF + L PGE +++PV F++DPE +DP + + I LSYTFF
Sbjct: 130 FNKVECFCFTDNTLKPGEDLELPVVFFVDPEFVNDPDLKDVKTITLSYTFF 180
>COXZ_BRAJA (P56939) Cytochrome c oxidase assembly protein ctaG
Length = 214
Score = 145 bits (367), Expect = 4e-35
Identities = 68/159 (42%), Positives = 99/159 (61%), Gaps = 8/159 (5%)
Query: 19 FASPPLYRTFCQATSYDGTVTRRERVEEKIARHDSNQTVTSREIVVQFNADISDGMPWKF 78
+A+ P Y FC+AT ++GT ++A +R+I V+F+++++ G+PWKF
Sbjct: 45 YAAVPFYNWFCRATGFNGTT--------QVATAAPATGPIARKIAVRFDSNVAPGLPWKF 96
Query: 79 LPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGVYFNKIQCFCFEEQRLL 138
P Q E+ V G+ FYTV NQ++ G + YNV P+ +G YF KI CFCF EQ +
Sbjct: 97 EPEQSEIEVNIGQVTTVFYTVTNQAARTTAGQAAYNVAPLTVGSYFQKINCFCFTEQTMA 156
Query: 139 PGEKIDMPVFFYIDPEIEDDPKMNGINNIILSYTFFKDK 177
PGEK +MPV FY+DP I DD + +G++ I LSYTF+ K
Sbjct: 157 PGEKREMPVVFYVDPSIADDHENDGLSTITLSYTFYPVK 195
>COXZ_RHOSH (P56940) Cytochrome c oxidase assembly protein ctaG
Length = 191
Score = 142 bits (357), Expect = 5e-34
Identities = 70/162 (43%), Positives = 95/162 (58%), Gaps = 9/162 (5%)
Query: 19 FASPPLYRTFCQATSYDGTVTRRERVEEKIARHDSNQTVTSREIVVQFNADISDGMPWKF 78
FA+ P Y FC+ T + GT ++ V R + V+F+A GMPW+F
Sbjct: 25 FAAVPFYNWFCRVTGFAGTTA---------VATEAPAEVLDRTVKVRFDASREAGMPWEF 75
Query: 79 LPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGVYFNKIQCFCFEEQRLL 138
P QRE+++K GE+ LAFY N + + G ++YNVTP G YF KI CFCF EQ L
Sbjct: 76 RPLQREMKLKIGETGLAFYEAYNPTDRTVAGTASYNVTPDAAGGYFAKIACFCFTEQVLA 135
Query: 139 PGEKIDMPVFFYIDPEIEDDPKMNGINNIILSYTFFKDKVSE 180
PGE+++MPV FY+DP I DDP + I LSYTF + ++E
Sbjct: 136 PGERVEMPVTFYVDPAIIDDPDGRYVRQITLSYTFHETALTE 177
>COXZ_PARDE (P08303) Cytochrome c oxidase assembly protein ctaG
Length = 194
Score = 134 bits (337), Expect = 1e-31
Identities = 69/170 (40%), Positives = 102/170 (59%), Gaps = 11/170 (6%)
Query: 6 LTGLAFGMGVLTIFASPPLYRTFCQATSYDGTVTRRERVEEKIARHDSNQTVTSREIVVQ 65
L G+ MG L+ +A+ P Y FC+ T + GT E + TV +I V+
Sbjct: 16 LAGVVVLMGALS-WAAVPFYSWFCKVTGFAGTTNVAEAASD---------TVLDEKIRVR 65
Query: 66 FNADISDGMPWKFLPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGVYFN 125
F+A+ + W F P QRE+ +K GE+A+AFY N + P+TG ++YNV P G +FN
Sbjct: 66 FDANADSNLGWTFRPMQREMELKIGENAIAFYEAINNTDEPVTGTASYNVAPDAAGYFFN 125
Query: 126 KIQCFCFEEQRLLPGEKIDMPVFFYIDPEIEDDPKMNGINNIILSYTFFK 175
KI+CFCF EQ L PGE+++MPV F++D ++ +D + I +I LSYTF +
Sbjct: 126 KIECFCFTEQTLQPGERVEMPVSFFVDADLVND-RDAVIRDITLSYTFHR 174
>COXZ_AGRT5 (Q8UHB2) Cytochrome C oxidase assembly protein ctaG
Length = 202
Score = 132 bits (332), Expect = 4e-31
Identities = 64/177 (36%), Positives = 100/177 (56%), Gaps = 11/177 (6%)
Query: 4 MCLTGLAFGMGVLTIFASPPLYRTFCQATSYDGTVTRRERVEEKIARHDSNQTVTSREIV 63
+CL +G+ +A+ PLY FC+ T Y+GT R E+ + + + I
Sbjct: 21 LCLVFFCAMIGMA--YAAVPLYSLFCRVTGYNGTTQRVEQYSD---------VILDKTIN 69
Query: 64 VQFNADISDGMPWKFLPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGVY 123
V F+A+ S+G+ W F P + V+ K GE+ + N+S TG + +NVTPM+ G Y
Sbjct: 70 VTFDANTSNGLNWDFRPVDKMVKPKIGETIKVTFKATNRSPVATTGTAVFNVTPMEAGAY 129
Query: 124 FNKIQCFCFEEQRLLPGEKIDMPVFFYIDPEIEDDPKMNGINNIILSYTFFKDKVSE 180
FNK++CFCF E L PGE ++MPV F++DP+I + ++ + LSYTF+ K +
Sbjct: 130 FNKVECFCFTETTLQPGETLEMPVVFFVDPDIATARETKSVHTLTLSYTFYPAKTEK 186
>COXZ_COWRU (Q04302) Cytochrome c oxidase assembly protein ctaG
Length = 153
Score = 124 bits (310), Expect = 2e-28
Identities = 60/135 (44%), Positives = 81/135 (59%), Gaps = 9/135 (6%)
Query: 18 IFASPPLYRTFCQATSYDGTVTRRERVEEKIARHDSNQTVTSREIVVQFNADISDGMPWK 77
++AS PLY FC+ T Y GTV + K+ + I ++FNADI+ +PWK
Sbjct: 23 VYASVPLYSIFCKVTGYGGTVRTTTVTQSKLGK---------TTIKIRFNADINKELPWK 73
Query: 78 FLPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGVYFNKIQCFCFEEQRL 137
F P VKPGE L FY EN ++ ++G++ YNVTP K+G YFNK+ CFCF +Q L
Sbjct: 74 FYPEIPYTTVKPGEQKLIFYRAENLTNEYVSGMAVYNVTPYKVGKYFNKVACFCFTKQTL 133
Query: 138 LPGEKIDMPVFFYID 152
P +K MPV F+ID
Sbjct: 134 SPYQKTIMPVSFFID 148
>G116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116
precursor
Length = 1346
Score = 31.2 bits (69), Expect = 1.4
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 70 ISDGMPWKFLPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGVYFNKIQC 129
+S + W++ Q E++ S + YT + T ++ ++ +N+TP G Y K+
Sbjct: 298 LSSNVSWRYEEQQLEIQ---NSSRFSIYTALFNNMTSVSKLTIHNITPGDAGEYVCKLIL 354
Query: 130 FCFEEQRLLPGEKID-MPVFFYIDPEIE 156
FE + +KID MP+ + E++
Sbjct: 355 DIFEYE---CKKKIDVMPIQILANEEMK 379
>Y795_METJA (Q58205) Hypothetical protein MJ0795
Length = 504
Score = 30.8 bits (68), Expect = 1.8
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 60 REIVVQFNADISDGMPWKFLPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMK 119
+E V N IS P+ L ++ G+S T +N++ TG+ T+NV P +
Sbjct: 208 KEGVYSINYKISYKNPYNLLELTQKSETIEGDSKTETLTYQNKNIVEETGILTFNVFPNE 267
Query: 120 L 120
L
Sbjct: 268 L 268
>TFS2_SCHPO (P49373) Transcription elongation factor S-II (TFIIS)
Length = 293
Score = 29.6 bits (65), Expect = 3.9
Identities = 28/95 (29%), Positives = 44/95 (45%), Gaps = 5/95 (5%)
Query: 39 TRRERVEEKIARHDSNQT-VTSREIVVQFNADISDGMPWKFLPTQREVRVKPGE-SALAF 96
TR V K+ H + + +REIV ++ AD+S G P K T K + + A
Sbjct: 46 TRLGLVVGKLRSHPNEKVGEQAREIVKKWKADVSKGRPLKTTTTTSSTPSKHADVGSQAQ 105
Query: 97 YTVENQSSTPITGVSTYNVTPMKLGVYFNKIQCFC 131
V+ QSS +G T+ + + V +KI+ C
Sbjct: 106 KQVQKQSS---SGQRTFKSDNVNVNVTDDKIRNNC 137
>NO56_HUMAN (O00567) Nucleolar protein Nop56 (Nucleolar protein 5A)
Length = 596
Score = 29.3 bits (64), Expect = 5.2
Identities = 22/74 (29%), Positives = 40/74 (53%), Gaps = 8/74 (10%)
Query: 41 RERVEEKIARHDSNQTVTS-----REIVVQFNADISDGMPWKFLPTQREVRVKPGE---S 92
RE+VEE+++ +++ + +E +VQ A+ + + L Q + R+K + +
Sbjct: 398 REQVEERLSFYETGEIPRKNLDVMKEAMVQAEAEEAAAEITRKLEKQEKKRLKKEKKRLA 457
Query: 93 ALAFYTVENQSSTP 106
ALA + EN SSTP
Sbjct: 458 ALALASSENSSSTP 471
>SYW_THEVO (Q978Y8) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
(Tryptophan--tRNA ligase) (TrpRS)
Length = 426
Score = 28.9 bits (63), Expect = 6.7
Identities = 15/32 (46%), Positives = 19/32 (58%)
Query: 133 EEQRLLPGEKIDMPVFFYIDPEIEDDPKMNGI 164
EEQR L GE PVF + EI+DD +N +
Sbjct: 349 EEQRKLGGEPEKCPVFDLYNYEIDDDKYVNEV 380
>ENV_HV1JR (P20871) Envelope polyprotein GP160 precursor [Contains:
Exterior membrane glycoprotein (GP120); Transmembrane
glycoprotein (GP41)]
Length = 848
Score = 28.9 bits (63), Expect = 6.7
Identities = 16/54 (29%), Positives = 25/54 (45%), Gaps = 3/54 (5%)
Query: 45 EEKIARHDSNQTVTSREIVVQFNADISDGMPWKFLPTQREVRVKPGESALAFYT 98
EEK+ N T ++ I+VQ N + T++ + + PG AFYT
Sbjct: 265 EEKVVIRSDNFTDNAKTIIVQLNESVKINCTRPSNNTRKSIHIGPGR---AFYT 315
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.138 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,964,898
Number of Sequences: 164201
Number of extensions: 809960
Number of successful extensions: 1699
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1670
Number of HSP's gapped (non-prelim): 21
length of query: 180
length of database: 59,974,054
effective HSP length: 103
effective length of query: 77
effective length of database: 43,061,351
effective search space: 3315724027
effective search space used: 3315724027
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Medicago: description of AC147472.6