BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147429.7 - phase: 0 /pseudo
         (455 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

PTP3_DICDI (P54637) Protein-tyrosine phosphatase 3 (EC 3.1.3.48)...    34  0.89
SYFA_THEVO (Q979U4) Phenylalanyl-tRNA synthetase alpha chain (EC...    32  2.6
REP_BUCAP (O51889) ATP-dependent DNA helicase rep (EC 3.6.1.-)         32  2.6
CON4_MOUSE (Q69Z26) Contactin 4 precursor (Brain-derived immunog...    31  5.8
OXAA_WOLSU (P60037) Inner membrane protein oxaA                        31  7.5
CON4_HUMAN (Q8IWV2) Contactin 4 precursor (Brain-derived immunog...    31  7.5
MYHD_HUMAN (Q9UKX3) Myosin heavy chain, skeletal muscle, extraoc...    30  9.8
CRP_HUMAN (P02741) C-reactive protein precursor                        30  9.8

>PTP3_DICDI (P54637) Protein-tyrosine phosphatase 3 (EC 3.1.3.48)
           (Protein-tyrosine-phosphate phosphohydrolase 3)
          Length = 989

 Score = 33.9 bits (76), Expect = 0.89
 Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 1/53 (1%)

Query: 28  SDSHSIIHLCITMKNFYYIGQGNNTNGYLLVHANGGLNQMKTGISDMVAIAKI 80
           S SH I  L + +  F   G   NTNG ++VH + G+ +  T IS  + +AKI
Sbjct: 618 SSSH-IRTLSVMVNTFKARGSAKNTNGPVIVHCSAGIGRSGTFISININMAKI 669


>SYFA_THEVO (Q979U4) Phenylalanyl-tRNA synthetase alpha chain (EC
           6.1.1.20) (Phenylalanine--tRNA ligase alpha chain)
           (PheRS)
          Length = 482

 Score = 32.3 bits (72), Expect = 2.6
 Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 24/168 (14%)

Query: 256 KEKEIDSKSKRLKGSCPMTPREVAVFLEALGYPVDTKIYVAAGVIYGSEGMKPLQKKFPN 315
           K +EI+  +  +KG           +L+  G  +D K       +   EG +  +   P 
Sbjct: 18  KNQEIEESNIEIKGLSRQDIASATSWLQVKGL-IDVKTREEVAYVLTDEGKRYAENGLPE 76

Query: 316 LLWHSSLATK--------EELQPFEGHLNQLAALDYYITVESDVFVYSYDGNMAKAARGH 367
           L  +S L  K        +E  P E  +       + IT ++ V  YS DG++       
Sbjct: 77  LRAYSILKRKGKLSLRDLQEAMPDEYKIVLAQLAKFGITPKNGVLEYS-DGHIEAEISRR 135

Query: 368 RKF------------DGFK--KTISPDKQRFVRLIDQLDNGLISWNDF 401
           ++F            + FK  K +  +K+R VR++     GL   N+F
Sbjct: 136 QRFLSDLNTDDQEMIEHFKRRKNVIEEKKRSVRIVSINSKGLEQLNNF 183


>REP_BUCAP (O51889) ATP-dependent DNA helicase rep (EC 3.6.1.-)
          Length = 658

 Score = 32.3 bits (72), Expect = 2.6
 Identities = 36/153 (23%), Positives = 69/153 (44%), Gaps = 12/153 (7%)

Query: 106 FNWKNFVEVLNEDVQVVESLPPELAAIKPALKAPVSWSKASYYRTDMLQLLKKHKVIKFT 165
           FN KN +E++N         P  + A   + K  V  +K  Y   +          + FT
Sbjct: 5   FNQKNAIELING--------PCLILAGAGSGKTKVIINKIIYLINNCQYKPGNIIAVTFT 56

Query: 166 HTDSRLVNNGLASSIQRVRCRAMYEALRFAVPIEELGKKLVNRLRENNTPYIALHLRYEK 225
           +  +  +   LA  +  ++ + M  +   ++ +E + KK +N L+ N+    +L    ++
Sbjct: 57  NKAAHEIKVRLAKHLNLLQIKKMIISTFHSLGLEII-KKEINTLKFNSN--FSLFDERDQ 113

Query: 226 DMLAFTGCSHNLTKEETQELKKMRYSVKHWKEK 258
            ML    CS ++ K +T+ LKK+ + +  WK K
Sbjct: 114 MMLLKKICSKSI-KNDTKLLKKLVFMISFWKNK 145


>CON4_MOUSE (Q69Z26) Contactin 4 precursor (Brain-derived
           immunoglobulin superfamily protein 2) (BIG-2)
          Length = 1026

 Score = 31.2 bits (69), Expect = 5.8
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 250 YSVKHWKEKEIDSKSKRLKGSCPMTPREVAVFLEALGYPVDTKIYVAAGVIYGSEGMKPL 309
           Y VK+W+  + +  +K+++     T  ++     +  Y +  K Y +AG    S  +   
Sbjct: 836 YEVKYWRHDDKEENAKKIRTVGNQTSTKITNLKGSALYHLSVKAYNSAGTGPSSATVNVT 895

Query: 310 QKKFP------NLLWHSS 321
            +K P      N++W+SS
Sbjct: 896 TRKPPPSQPPGNIIWNSS 913


>OXAA_WOLSU (P60037) Inner membrane protein oxaA
          Length = 536

 Score = 30.8 bits (68), Expect = 7.5
 Identities = 15/41 (36%), Positives = 23/41 (55%), Gaps = 1/41 (2%)

Query: 400 DFSTKVKSIHAKKKGAPQARKIHRHPKFEETFYANPFPGCI 440
           D + K+K I  K KG PQ  ++H    +++   ANP  GC+
Sbjct: 370 DIAPKMKEIQEKYKGDPQKLQVHMMELYKK-HGANPMGGCL 409


>CON4_HUMAN (Q8IWV2) Contactin 4 precursor (Brain-derived
           immunoglobulin superfamily protein 2) (BIG-2)
          Length = 1026

 Score = 30.8 bits (68), Expect = 7.5
 Identities = 17/78 (21%), Positives = 38/78 (47%), Gaps = 6/78 (7%)

Query: 250 YSVKHWKEKEIDSKSKRLKGSCPMTPREVAVFLEALGYPVDTKIYVAAGVIYGSEGMKPL 309
           Y VK+W+ ++ +  +++++     T  ++     ++ Y +  K Y +AG    S  +   
Sbjct: 836 YEVKYWRHEDKEENARKIRTVGNQTSTKITNLKGSVLYHLAVKAYNSAGTGPSSATVNVT 895

Query: 310 QKKFP------NLLWHSS 321
            +K P      N++W+SS
Sbjct: 896 TRKPPPSQPPGNIIWNSS 913


>MYHD_HUMAN (Q9UKX3) Myosin heavy chain, skeletal muscle, extraocular
            (MyHC-eo)
          Length = 1938

 Score = 30.4 bits (67), Expect = 9.8
 Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 16/219 (7%)

Query: 186  RAMYEALRFAVPIEELGKKLVNRLRENNTPYIALHLRYEKDMLAFTGCSHNLTKEETQEL 245
            R   E  R     +EL +K+V+ L+E N   + +    E  M A   C   +  +   E 
Sbjct: 862  RTKEELARSEARRKELEEKMVSLLQEKNDLQLQVQSETENLMDAEERCEGLIKSKILLEA 921

Query: 246  KKMRYSVKHWKEKEIDS----KSKRLKGSCPMTPREVAVFLEALGYPVDTKIYVAAGVIY 301
            K    + +  +E+E++S    K + L+  C    R++   LE     V+ + +     + 
Sbjct: 922  KVKELTERLEEEEEMNSELVAKKRNLEDKCSSLKRDID-DLELTLTKVEKEKHATENKVK 980

Query: 302  G-SEGMKPLQKKFPNL------LWHSSLATKEELQPFEGHLNQLAALDYYITVESDVFVY 354
              SE M  L++    L      L  +   T ++LQ  E  +N L  ++  +  ++D    
Sbjct: 981  NLSEEMTALEENISKLTKEKKSLQEAHQQTLDDLQVEEDKVNGLIKINAKLEQQTD---- 1036

Query: 355  SYDGNMAKAARGHRKFDGFKKTISPDKQRFVRLIDQLDN 393
              +G++ +  +     +  K+ +  D +     I  L+N
Sbjct: 1037 DLEGSLEQEKKLRADLERAKRKLEGDLKMSQESIMDLEN 1075


>CRP_HUMAN (P02741) C-reactive protein precursor
          Length = 224

 Score = 30.4 bits (67), Expect = 9.8
 Identities = 22/85 (25%), Positives = 41/85 (47%), Gaps = 6/85 (7%)

Query: 180 IQRVRCRAMYEALRFAVPIEELGKKLVNRLRENNTPYIALHLRYEKDMLAFTGCSHNLTK 239
           ++++ C  +  +L  A    ++ +K     +E++T Y++L     K + AFT C H  T 
Sbjct: 1   MEKLLCFLVLTSLSHAFGQTDMSRKAFVFPKESDTSYVSLKAPLTKPLKAFTVCLHFYT- 59

Query: 240 EETQELKKMR-YSVKHWKEKEIDSK 263
               EL   R YS+  +  K  D++
Sbjct: 60  ----ELSSTRGYSIFSYATKRQDNE 80


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,603,274
Number of Sequences: 164201
Number of extensions: 2336029
Number of successful extensions: 5952
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5949
Number of HSP's gapped (non-prelim): 10
length of query: 455
length of database: 59,974,054
effective HSP length: 114
effective length of query: 341
effective length of database: 41,255,140
effective search space: 14068002740
effective search space used: 14068002740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)