BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146865.2 - phase: 0
(107 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SMD1_MOUSE (P62315) Small nuclear ribonucleoprotein Sm D1 (snRNP... 159 1e-39
SMD1_HUMAN (P62314) Small nuclear ribonucleoprotein Sm D1 (snRNP... 159 1e-39
SMD1_SCHPO (O42661) Probable small nuclear ribonucleoprotein Sm ... 149 1e-36
SMD1_DROME (Q9VU02) Probable small nuclear ribonucleoprotein Sm ... 147 3e-36
SMD1_CAEEL (Q10013) Probable small nuclear ribonucleoprotein Sm ... 134 3e-32
SMD1_YEAST (Q02260) Small nuclear ribonucleoprotein Sm D1 (snRNP... 68 4e-12
LSMA_HUMAN (Q969L4) U7 snRNA-associated Sm-like protein LSm10 55 3e-08
LSM4_ORYSA (Q9LGE6) Probable U6 snRNA-associated Sm-like protein... 55 3e-08
LSM4_FAGSY (Q9ZRU9) Probable U6 snRNA-associated Sm-like protein... 55 4e-08
SMD3_XENLA (P62323) Small nuclear ribonucleoprotein Sm D3 (snRNP... 54 5e-08
SMD3_MOUSE (P62320) Small nuclear ribonucleoprotein Sm D3 (snRNP... 54 5e-08
SMD3_HUMAN (P62318) Small nuclear ribonucleoprotein Sm D3 (snRNP... 54 5e-08
LSM4_CAEEL (Q19952) Probable U6 snRNA-associated Sm-like protein... 52 2e-07
LSM4_TOBAC (Q43582) Probable U6 snRNA-associated Sm-like protein... 52 3e-07
SMD3_CAEEL (Q17348) Small nuclear ribonucleoprotein Sm D3 (snRNP... 50 7e-07
LSMA_MOUSE (Q8QZX5) U7 snRNA-associated Sm-like protein LSm10 50 7e-07
SMD3_DROME (O44437) Small nuclear ribonucleoprotein SM D3 (snRNP... 50 1e-06
LSM4_MOUSE (Q9QXA5) U6 snRNA-associated Sm-like protein LSm4 46 1e-05
SMD3_SCHPO (Q9UUC6) Probable small nuclear ribonucleoprotein Sm ... 45 2e-05
LSM4_SCHPO (O14352) Probable U6 snRNA-associated Sm-like protein... 45 3e-05
>SMD1_MOUSE (P62315) Small nuclear ribonucleoprotein Sm D1 (snRNP
core protein D1) (Sm-D1) (Sm-D autoantigen)
Length = 119
Score = 159 bits (402), Expect = 1e-39
Identities = 79/107 (73%), Positives = 91/107 (84%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY
Sbjct: 8 MKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 107
+ILPDSL L+TLLV+ P+VK KK A GRGRGRGRGRGRGRGR
Sbjct: 68 FILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114
>SMD1_HUMAN (P62314) Small nuclear ribonucleoprotein Sm D1 (snRNP
core protein D1) (Sm-D1) (Sm-D autoantigen)
Length = 119
Score = 159 bits (402), Expect = 1e-39
Identities = 79/107 (73%), Positives = 91/107 (84%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY
Sbjct: 8 MKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 107
+ILPDSL L+TLLV+ P+VK KK A GRGRGRGRGRGRGRGR
Sbjct: 68 FILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114
>SMD1_SCHPO (O42661) Probable small nuclear ribonucleoprotein Sm D1
(snRNP core protein D1) (Sm-D1)
Length = 117
Score = 149 bits (375), Expect = 1e-36
Identities = 76/108 (70%), Positives = 90/108 (82%), Gaps = 5/108 (4%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL NETVSIELKNGTIVHGTIT VD+ MNTHLK VK+T+KG+ PV ++ LS+RGNNIRY
Sbjct: 8 MKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRG-RGRGR 107
YILPDSL L+TLL++++ + K KK K + RGRGRGRGRG RGRGR
Sbjct: 68 YILPDSLPLDTLLIDDSTKPKQKK----KEVVRGRGRGRGRGTRGRGR 111
>SMD1_DROME (Q9VU02) Probable small nuclear ribonucleoprotein Sm D1
(snRNP core protein D1) (Sm-D1)
Length = 124
Score = 147 bits (372), Expect = 3e-36
Identities = 73/110 (66%), Positives = 94/110 (85%), Gaps = 3/110 (2%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T+K ++PV L+ LS+RGNNIRY
Sbjct: 8 MKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRG-RGRG--RGRGR 107
+ILPDSL LETLL+++ P+ K KK +G+ RGRGRG RGRG RGRGR
Sbjct: 68 FILPDSLPLETLLIDDTPKSKTKKKDSGRVGNRGRGRGARGRGGPRGRGR 117
>SMD1_CAEEL (Q10013) Probable small nuclear ribonucleoprotein Sm D1
(snRNP core protein D1) (Sm-D1)
Length = 126
Score = 134 bits (338), Expect = 3e-32
Identities = 69/109 (63%), Positives = 83/109 (75%), Gaps = 2/109 (1%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL++ETV+IELKNGT V GTI GVD++MNTHL+ V +T+K K PV LD LS+RGNNIRY
Sbjct: 8 MKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRG--RGRGRGRGRGR 107
ILPD L L+TLL+++ PR K + AG GRGRG RG GRGRGR
Sbjct: 68 IILPDPLALDTLLIDDEPRKKARAARAGASRGRGRGGMRGGRGGRGRGR 116
>SMD1_YEAST (Q02260) Small nuclear ribonucleoprotein Sm D1 (snRNP
core protein D1) (Sm-D1)
Length = 146
Score = 67.8 bits (164), Expect = 4e-12
Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 27/102 (26%)
Query: 2 KLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-------------------- 41
KL NE V+IELKNGT V GT+ V MN L VKLTL
Sbjct: 9 KLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIAMASLYLT 68
Query: 42 -GKNP------VTLDHLSVRGNNIRYYILPDSLNLETLLVEE 76
G+ P +L ++++RGN IR ILPDSLNL++LLV++
Sbjct: 69 GGQQPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVDQ 110
>LSMA_HUMAN (Q969L4) U7 snRNA-associated Sm-like protein LSm10
Length = 123
Score = 55.1 bits (131), Expect = 3e-08
Identities = 28/91 (30%), Positives = 47/91 (50%)
Query: 3 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYI 62
L +++L++ ++ HG I VD MN L V T + + V LD L V G N+RY
Sbjct: 24 LQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTGRNVRYVH 83
Query: 63 LPDSLNLETLLVEEAPRVKPKKPTAGKPLGR 93
+PD +N+ + + ++ + + GK GR
Sbjct: 84 IPDDVNITSTIEQQLQIIHRVRNFGGKGQGR 114
>LSM4_ORYSA (Q9LGE6) Probable U6 snRNA-associated Sm-like protein
LSm4
Length = 147
Score = 55.1 bits (131), Expect = 3e-08
Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 10 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVTLDHLSVRGNNIRYYILPDSLN 68
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE-- 74
Query: 69 LETLLVEEAPRVKPKKPTAGKPLGRGRGRGR--------GRGRGRGR 107
++++ K + +P G GRGRGR GRG GRG+
Sbjct: 75 ----VIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGRGIGRGQ 117
>LSM4_FAGSY (Q9ZRU9) Probable U6 snRNA-associated Sm-like protein
LSm4 (Glycine-rich protein 2)
Length = 148
Score = 54.7 bits (130), Expect = 4e-08
Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 10 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVTLDHLSVRGNNIRYYILPDSLN 68
+ELK+G +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 17 VELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYIRGNTIKYLRVPDE-- 74
Query: 69 LETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRG 106
V + + + K KP G GRGRGRGR G G
Sbjct: 75 -----VIDKVQEETKSRADRKPPGVGRGRGRGREEGSG 107
>SMD3_XENLA (P62323) Small nuclear ribonucleoprotein Sm D3 (snRNP
core protein D3) (Sm-D3)
Length = 126
Score = 54.3 bits (129), Expect = 5e-08
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 8 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSL 67
V+ E G + G + + +MN + + +T + L+ + +RG+ IR+ ILPD
Sbjct: 18 VTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPD-- 75
Query: 68 NLETLLVEEAPRVKP-KKPTAGKPLGRGR---------GRGRGRGRGRG 106
+++ AP +K K G GRG+ RGRGRG GRG
Sbjct: 76 -----MLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRG 119
>SMD3_MOUSE (P62320) Small nuclear ribonucleoprotein Sm D3 (snRNP
core protein D3) (Sm-D3)
Length = 126
Score = 54.3 bits (129), Expect = 5e-08
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 8 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSL 67
V+ E G + G + + +MN + + +T + L+ + +RG+ IR+ ILPD
Sbjct: 18 VTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPD-- 75
Query: 68 NLETLLVEEAPRVKP-KKPTAGKPLGRGR---------GRGRGRGRGRG 106
+++ AP +K K G GRG+ RGRGRG GRG
Sbjct: 76 -----MLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRG 119
>SMD3_HUMAN (P62318) Small nuclear ribonucleoprotein Sm D3 (snRNP
core protein D3) (Sm-D3)
Length = 126
Score = 54.3 bits (129), Expect = 5e-08
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 8 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSL 67
V+ E G + G + + +MN + + +T + L+ + +RG+ IR+ ILPD
Sbjct: 18 VTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPD-- 75
Query: 68 NLETLLVEEAPRVKP-KKPTAGKPLGRGR---------GRGRGRGRGRG 106
+++ AP +K K G GRG+ RGRGRG GRG
Sbjct: 76 -----MLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRG 119
>LSM4_CAEEL (Q19952) Probable U6 snRNA-associated Sm-like protein
LSm4
Length = 123
Score = 52.4 bits (124), Expect = 2e-07
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 5 NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVTLDHLSVRGNNIRYYIL 63
N + +ELKNG +G + D MN HL V T K G + VRG+ I+Y +
Sbjct: 13 NHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLRI 72
Query: 64 PDS-LNLETLLVEEAPRVKPKKPTAGKPLGR-GRGRGRGRGRGRG 106
P++ ++L V E R + ++ + G+ GR GRG RG G RG
Sbjct: 73 PETVVDLVKTEVNEVRRQQQREQSRGRGGGRGGRGGHRGGGGNRG 117
>LSM4_TOBAC (Q43582) Probable U6 snRNA-associated Sm-like protein
LSm4 (Glycine-rich protein 10) (GRP 10)
Length = 146
Score = 51.6 bits (122), Expect = 3e-07
Identities = 37/114 (32%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 10 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVTLDHLSVRGNNIRYYILPDSLN 68
+ELKNG +G + D MN HL+ V T K G + VRGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNTIKYLRVPDEV- 75
Query: 69 LETLLVEEAPRVKPKKPTAGK---------------PLGRGRGRGRGRGRGRGR 107
++ + E R K P G+ P G GRG G +GRG+
Sbjct: 76 IDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRGMDDGGAKGRGK 129
>SMD3_CAEEL (Q17348) Small nuclear ribonucleoprotein Sm D3 (snRNP
core protein D3) (Sm-D3)
Length = 136
Score = 50.4 bits (119), Expect = 7e-07
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 8 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSL 67
V++E G + G ++ + +MN L +T + LD++ +RGN IR+ ILPD
Sbjct: 19 VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFMILPD-- 76
Query: 68 NLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRG 106
+++ AP K +G G G RGRGRG
Sbjct: 77 -----MLKNAPMFKNIGRAQKGAIGMGLGGLDQRGRGRG 110
>LSMA_MOUSE (Q8QZX5) U7 snRNA-associated Sm-like protein LSm10
Length = 122
Score = 50.4 bits (119), Expect = 7e-07
Identities = 26/91 (28%), Positives = 46/91 (49%)
Query: 3 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYI 62
L + +++L++ ++ G I VD MN L V T + + V LD L V G N+RY
Sbjct: 24 LQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGRNVRYVH 83
Query: 63 LPDSLNLETLLVEEAPRVKPKKPTAGKPLGR 93
+PD +++ + ++ + + GK GR
Sbjct: 84 IPDGVDITATIEQQLQIIHRVRNFGGKGQGR 114
>SMD3_DROME (O44437) Small nuclear ribonucleoprotein SM D3 (snRNP
core protein D3) (SM-D3)
Length = 151
Score = 49.7 bits (117), Expect = 1e-06
Identities = 31/106 (29%), Positives = 52/106 (48%), Gaps = 17/106 (16%)
Query: 8 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSL 67
++ E G + G + + +MN + + +T + L+++ +RG+ IR+ ILPD
Sbjct: 18 ITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGSKIRFLILPD-- 75
Query: 68 NLETLLVEEAPRVKPKKPTAGKPLGRGRGRGR-------GRGRGRG 106
+++ AP K + GK LG GRG+ RGRGRG
Sbjct: 76 -----MLKNAPMFKKQ---TGKGLGGTAGRGKAAILRAQARGRGRG 113
>LSM4_MOUSE (Q9QXA5) U6 snRNA-associated Sm-like protein LSm4
Length = 137
Score = 46.2 bits (108), Expect = 1e-05
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 5 NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVTLDHLSVRGNNIRYYIL 63
N + +ELKNG +G + D MN +L+ V T + G + +RG+ I+Y +
Sbjct: 12 NHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRI 71
Query: 64 PDSLNLETLLVEEAPRVK-----PKKPTAGKPLGRGRGRGRGRGRGRG 106
PD + ++ EEA + + +K G+ +G G GRG GRGRG
Sbjct: 72 PD--EIIDMVREEAAKGRGRGGPQQKQQKGRGMG-GAGRGVFGGRGRG 116
>SMD3_SCHPO (Q9UUC6) Probable small nuclear ribonucleoprotein Sm
D3 (snRNP core protein D3) (Sm-D3)
Length = 97
Score = 45.4 bits (106), Expect = 2e-05
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 1 MKLNNET----VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 56
+KL +ET V++EL+NG+ G + + +MN ++ + +T + LD + +RG+
Sbjct: 5 IKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGS 64
Query: 57 NIRYYILPDSLNLETLLVEEAPRVKPKKPTAGK 89
+IR+ I+PD L + + P PT G+
Sbjct: 65 HIRFLIVPDMLR-NAPMFKVGPGRSVPLPTRGR 96
>LSM4_SCHPO (O14352) Probable U6 snRNA-associated Sm-like protein
LSm4
Length = 121
Score = 45.1 bits (105), Expect = 3e-05
Identities = 38/110 (34%), Positives = 52/110 (46%), Gaps = 17/110 (15%)
Query: 8 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTL-KGKNPVTLDHLSVRGNNIRYYILPDS 66
+ +ELKNG +G + D MN L+ V T+ G L +RGNNI+Y + D
Sbjct: 15 ILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDE 74
Query: 67 LNLETLLVEEAPRVKPKKPTAGKPLGRGRG-RGRG---------RGRGRG 106
+L + A + ++ G RGRG RGRG RGRGRG
Sbjct: 75 -----VLSQVAKQQAQQRENRGSRF-RGRGQRGRGNYGHTAPNRRGRGRG 118
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.315 0.138 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,619,194
Number of Sequences: 164201
Number of extensions: 563020
Number of successful extensions: 4918
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 4261
Number of HSP's gapped (non-prelim): 374
length of query: 107
length of database: 59,974,054
effective HSP length: 83
effective length of query: 24
effective length of database: 46,345,371
effective search space: 1112288904
effective search space used: 1112288904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146865.2