BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146854.1 + phase: 0 /pseudo
(1390 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NY6R_MOUSE (Q61212) Neuropeptide Y receptor type 6 (NPY6-R) (Pan... 45 0.002
NU6M_ALBCO (P48922) NADH-ubiquinone oxidoreductase chain 6 (EC 1... 37 0.49
NU5M_TRYBB (P04540) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 37 0.49
NUOL_BUCBP (Q89AT6) NADH-quinone oxidoreductase chain L (EC 1.6.... 36 0.64
NU4M_PHOVI (Q00506) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 36 0.64
NU4M_HALGR (P38601) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 36 0.84
NU4M_CAEEL (P24892) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 36 0.84
YCX2_CYAPA (P48324) Hypothetical 24.3 kDa protein in PSBH-RPL11 ... 35 1.1
NU5M_APILI (P34855) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 35 1.1
NU4M_SHEEP (O78755) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 35 1.1
FLIR_BUCAP (Q8KA35) Flagellar biosynthetic protein fliR 35 1.4
YAMB_SCHPO (Q10064) Hypothetical protein C1F5.11c in chromosome I 35 1.9
YT43_CAEEL (Q11071) Hypothetical protein B0416.3 in chromosome X 34 2.4
Y998_METJA (Q58404) Hypothetical protein MJ0998 34 3.2
NU4M_RABIT (O79436) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 34 3.2
HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor 34 3.2
Y610_ENCCU (Q8SVF2) Hypothetical protein ECU06_0100 33 4.2
NU4M_APILI (P34853) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 33 4.2
ER32_SCHPO (O13666) Probable C-5 sterol desaturase 2 (EC 1.3.3.-... 33 4.2
CYB_TRYBB (P00164) Cytochrome b 33 4.2
>NY6R_MOUSE (Q61212) Neuropeptide Y receptor type 6 (NPY6-R)
(Pancreatic polypeptide receptor 2) (PP2)
Length = 371
Score = 44.7 bits (104), Expect = 0.002
Identities = 67/263 (25%), Positives = 119/263 (44%), Gaps = 49/263 (18%)
Query: 731 LFSNINLLIMFY--------MIHCLIFILS-KFLVAFVMLLHFKLIEQNYNLEPESVF-S 780
+F N++L+I+ + + + LI LS ++ VM + F +I Y L VF +
Sbjct: 50 IFGNLSLIIIIFKKQREAQNVTNILIANLSLSDILVCVMCIPFTVI---YTLMDHWVFGN 106
Query: 781 *VTSLDSKVQFFLTYIPEKSLFQEMLFSMN*YYLTIHHHPLLPLKIGNIFLPLPLIFLI- 839
+ L S VQ + S+F +L ++ Y L ++ P ++ + + + LI+LI
Sbjct: 107 TMCKLTSYVQSVSVSV---SIFSLVLIAIERYQLIVNPRGWKP-RVAHAYWGIILIWLIS 162
Query: 840 --LRILIFHNHHLLSHHLHSPLLHNLHHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFL 897
L I +F LS+HL + HNL LP++I H + + L
Sbjct: 163 LTLSIPLF-----LSYHLTNEPFHNL-----------SLPTDIYTHQVACVEIWPSKLNQ 206
Query: 898 LLITVSVNIPFPILFHMLVYLTLILFLLCLLLLILNQNPMMRQ-----SNMTAGNKQCRL 952
LL + S LF + ++ L L+C L ++L RQ N + N+ R+
Sbjct: 207 LLFSTS-------LFMLQYFVPLGFILICYLKIVLCLRKRTRQVDRRKENKSRLNENKRV 259
Query: 953 NLMLLN-RLALGR*WISLHLSNL 974
N+ML++ + G W+ L++ N+
Sbjct: 260 NVMLISIVVTFGACWLPLNIFNV 282
>NU6M_ALBCO (P48922) NADH-ubiquinone oxidoreductase chain 6 (EC
1.6.5.3)
Length = 155
Score = 36.6 bits (83), Expect = 0.49
Identities = 26/109 (23%), Positives = 53/109 (47%), Gaps = 14/109 (12%)
Query: 835 LIFLILRILIFHNHHLLSHHLHSPLLHNLHHYLLMSLYLLELPSEIKLHLHIYMTTFAMH 894
++ L + + + ++++ S H++ LL+ +LMSL +E + I L ++ T
Sbjct: 61 ILVLFIYVCMISSNYIASQHMYKSLLYAWGAVMLMSL-TMETDTFIILGSNMMYT----- 114
Query: 895 LFLLLITVSVNIPFPILFHMLVYLTLILFLLCLLLLILNQNPMMRQSNM 943
SVNIP IL + +YL ++ F + L++ + M+ S +
Sbjct: 115 --------SVNIPMTILIFLSIYLLIVFFAVVNLMVNMTSILMVESSQV 155
>NU5M_TRYBB (P04540) NADH-ubiquinone oxidoreductase chain 5 (EC
1.6.5.3)
Length = 590
Score = 36.6 bits (83), Expect = 0.49
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 339 LWFLKHLPQILLAPIILLLLFHPFPQVSILLSLVLYILKIIIGLLIQVLMSIFAPLCICF 398
L+F H+ I+L + H F L L Y G ++ L+ IFA L C
Sbjct: 327 LFFCYHMFYKATLFIVLGIWIHIFFG---LQDLRCYFFMYFCGCVLARLLLIFAILNSCS 383
Query: 399 IPFIKLNLC--MLLYLMVLL*LFTMLALLFFHLL---STLPMSYIHLISELT*FLFTNFA 453
I F+ C MLL L++LL + ++ LF ++ T+ +Y L FL F
Sbjct: 384 IWFLCGFYCKDMLLALLMLLSFYNIIEFLFISIIFIFFTMIYNYFLLF-----FLMFVFK 438
Query: 454 LFCLTKSIFCLIN 466
FCL +F L +
Sbjct: 439 CFCLVDCLFLLFD 451
>NUOL_BUCBP (Q89AT6) NADH-quinone oxidoreductase chain L (EC
1.6.99.5) (NADH dehydrogenase I, chain L) (NDH-1, chain
L)
Length = 621
Score = 36.2 bits (82), Expect = 0.64
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 27/206 (13%)
Query: 261 LRTIQDIALFAIGIITQWIFVTRCMVIPMQINL--MLLQMLLLMKAFLILRKMVKDLPLS 318
L ++ I L+ +GII+ + C+ +Q N+ +L + ++ L +K+ L+
Sbjct: 274 LFSLSPIILYILGIISCLTIIMSCLSALVQKNIKCILAYSTMGQVGYMFLALAMKEWTLA 333
Query: 319 LK----------LVLLKSNMVILLLYFSNHLWFL----KHLPQILLAPIILLLLFHPFPQ 364
+ L+ L + VI+LL +++ + K P + + +I FP
Sbjct: 334 INHLVTHAIFKTLLFLSAGAVIILLNNEKNIFNMGGLRKKFPMLYFSFLIGGASLASFPI 393
Query: 365 VS--------ILLSLVL--YILKIIIGLLIQVLMSIFAPLCICFIPFIKLNLCMLLYLMV 414
++ IL S + Y L +++GLL VL SI+ + F+ F Y+
Sbjct: 394 LTSGFYSKGNILFSALENNYYLFLVLGLLGSVLTSIYT-FRMIFLVFCGAQKYRAHYVFF 452
Query: 415 LL*LFTMLALLFFHLLSTLPMSYIHL 440
L L LL LLST+ IHL
Sbjct: 453 SRTLANTLPLLILILLSTVIFVLIHL 478
>NU4M_PHOVI (Q00506) NADH-ubiquinone oxidoreductase chain 4 (EC
1.6.5.3)
Length = 459
Score = 36.2 bits (82), Expect = 0.64
Identities = 47/196 (23%), Positives = 88/196 (43%), Gaps = 21/196 (10%)
Query: 276 TQWIFVTRCMVIPMQINLMLLQMLLLMKAFLILRKMVKDLPLS-----LKLVLLKSNMVI 330
T ++F T +P+ + L+ +Q + FL+++ + LP S L L + + MV
Sbjct: 147 TYFLFYTLVGSLPLLVALLFIQNNMGTLNFLMIQLWAQPLPSSWSNTLLWLACMMAFMVK 206
Query: 331 LLLYFSNHLWFLK-HLP-----QILLAPIILLLLFHPFPQVSILLSLVLYILKIIIGLLI 384
+ LY HLW K H+ ++LA ++L L + ++++LLS + + +L
Sbjct: 207 MPLY-GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITVLLSPLTNFMAYPFMMLS 265
Query: 385 QVLMSIFAPLCICFIPFIKLNLCMLLYLMVLL*LFTMLALLFFHLLSTLPMSYIHLISEL 444
M + + +C+ L + Y V + +AL+ +L P SY+ + +
Sbjct: 266 LWGMIMTSSICLRQTDLKSL----IAYSSV-----SHMALVIMAILIQTPWSYMGATALM 316
Query: 445 T*FLFTNFALFCLTKS 460
T+ LFCL S
Sbjct: 317 IAHGLTSSMLFCLANS 332
>NU4M_HALGR (P38601) NADH-ubiquinone oxidoreductase chain 4 (EC
1.6.5.3)
Length = 459
Score = 35.8 bits (81), Expect = 0.84
Identities = 47/196 (23%), Positives = 88/196 (43%), Gaps = 21/196 (10%)
Query: 276 TQWIFVTRCMVIPMQINLMLLQMLLLMKAFLILRKMVKDLPLS-----LKLVLLKSNMVI 330
T ++F T +P+ + L+ +Q + FL+++ + LP S L L + + MV
Sbjct: 147 TYFLFYTLVGSLPLLVALLFIQNNMGTLNFLMIQLWAQPLPSSWSNTLLWLACMMAFMVK 206
Query: 331 LLLYFSNHLWFLK-HLP-----QILLAPIILLLLFHPFPQVSILLSLVLYILKIIIGLLI 384
+ LY HLW K H+ ++LA ++L L + +++ LLS + + +L
Sbjct: 207 MPLY-GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITALLSPLTSFMAYPFMMLS 265
Query: 385 QVLMSIFAPLCICFIPFIKLNLCMLLYLMVLL*LFTMLALLFFHLLSTLPMSYIHLISEL 444
M++ + +C+ L + Y V + +AL+ +L P SY+ + +
Sbjct: 266 LWGMTMTSSICLRQTDLKSL----IAYSSV-----SHMALVIVAILIQTPWSYMGATALM 316
Query: 445 T*FLFTNFALFCLTKS 460
T+ LFCL S
Sbjct: 317 IAHGLTSSVLFCLANS 332
>NU4M_CAEEL (P24892) NADH-ubiquinone oxidoreductase chain 4 (EC
1.6.5.3)
Length = 409
Score = 35.8 bits (81), Expect = 0.84
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 24/194 (12%)
Query: 330 ILLLYFSNHLWFLKHLPQILLAPIILLLLFHPFPQVSILLSLVLY--ILKIIIGLLI--- 384
+L F + LW K + +L + L+F+ F + L L Y IL I++ L I
Sbjct: 1 MLEFLFISLLWLFKPIYFLLFTVMFSFLIFNNFSWGGLFLVLDSYSFILLIVMSLFILGI 60
Query: 385 ----------QVLMSIFAPLCICFIPFIKLNLCMLLYLMVLL*LFTMLALLFFHLLSTLP 434
+L I +CI F FI N+ M+LY+ L +F +L ++ +
Sbjct: 61 IVISEKNNNLLILSEILVFICIIF--FIPSNM-MMLYMFFELSMFPILVMILGYGSQIEK 117
Query: 435 MSYIHLISELT*FLFTNFALFCLTKSIFCLINA*YRI*NPRR*LVWVIFVMVSIG*ILLH 494
++ + + F F LF KS F L+ Y + W +F ++S+ ++
Sbjct: 118 INSSYYLMFYAAFCSFPF-LFVYFKSNFLLVFTYYNF-----VISWEMFFILSLSFMMKF 171
Query: 495 AIRSLLFLLPQVFV 508
I L LP+ V
Sbjct: 172 PIYFLHLWLPKAHV 185
Score = 34.3 bits (77), Expect = 2.4
Identities = 91/414 (21%), Positives = 172/414 (40%), Gaps = 62/414 (14%)
Query: 498 SLLFLLPQVFVLQFL*TLVILFVLV*LFHVFLPMLFGTLD*DICLIKDCPKCIICILLFL 557
SLL+L ++ L LF ++ F +F +G L L+ D I+ I++ L
Sbjct: 8 SLLWLFKPIYFL--------LFTVMFSFLIFNNFSWGGL----FLVLDSYSFILLIVMSL 55
Query: 558 LIIKLLVTYVTLLSKENYLIIPANLLLILNLNFFTLIFGVL*LKHLFMAISIF*P*LMIL 617
I+ ++V + K N L+I + +L+ + + FF I + + ++F +S+F ++++
Sbjct: 56 FILGIIV----ISEKNNNLLILSEILVFICIIFF--IPSNMMMLYMFFELSMF--PILVM 107
Query: 618 VDSYGSFYLKPKLKFLHMLKISFT*SIIIIMLLQNS*GLIMVLNSF---YQIFMLQKASF 674
+ YGS K + M +F + + +++ L+ +F +++F + SF
Sbjct: 108 ILGYGSQIEKINSSYYLMFYAAFCSFPFLFVYFKSNFLLVFTYYNFVISWEMFFILSLSF 167
Query: 675 IKELV*KHLNKMLE*R--ENINTFSMLLE---LCCFNPNFPMFSGHMLFCIQFFS*IEFQ 729
+ + L+ L E T SMLL L F G + F
Sbjct: 168 MMKFPIYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLSF----------- 216
Query: 730 LLFSNINLLIMFYMI----HCLIFIL-SKFLVAFVMLLHFKLIEQNYNLEPESVFS*VTS 784
+ +N+ +LI F + C +F SK L A+ + H + + VF ++S
Sbjct: 217 -VHNNVWILIAFLGMILGSFCCVFQSDSKALAAYSSVTHMSFLLLSL------VFITMSS 269
Query: 785 LDSKVQFFLTYIPEKSLFQEMLFSMN*YYLTIHHHPLLPLKIGNIFLPLPLIFLILRILI 844
S V L + +L M + + +Y H + + F +I IL ++
Sbjct: 270 KISSVMLMLAHGYTSTL---MFYLIGEFY---HTSGSRMIYFMSSFFSSSMIMGILFSVV 323
Query: 845 FHNHHLLSHHLHSPLLHNLHHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFLL 898
F LS+ P L L +L++S +L S + ++ +F LFL+
Sbjct: 324 F-----LSNSGVPPSLSFLSEFLVISNSMLISKSMFVMIFIYFVVSFYYSLFLI 372
>YCX2_CYAPA (P48324) Hypothetical 24.3 kDa protein in PSBH-RPL11
intergenic region (ORF182)
Length = 182
Score = 35.4 bits (80), Expect = 1.1
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 22/147 (14%)
Query: 301 LMKAFLILRKMVKDLPLSLKLVLLKSNMVILLLYFSNHLWFLK----------HLPQILL 350
+ + +L+L + +K L++KLV+ K N+ I+ Y FLK +L ++LL
Sbjct: 10 IKQLYLVLLEEIKIFILTIKLVISKKNVWIISYYH-----FLKKVVVSKKQILNLSRLLL 64
Query: 351 APIIL-------LLLFHPFPQVSILLSLVLYILKIIIGLLIQVLMSIFAPLCICFIPFIK 403
+L L L + IL + +I KI+I L+ + +I+ I I
Sbjct: 65 RFTLLSIFILFVLDLISKYITAPILTGIFNFIFKILISLVNLLYKAIYWIYIIFAIFLHF 124
Query: 404 LNLCMLLYLMVLL*LFTMLALLFFHLL 430
+N ++L + L +F + + FF+ L
Sbjct: 125 MNYLLVLLELTLQPIFEWIEIFFFNSL 151
>NU5M_APILI (P34855) NADH-ubiquinone oxidoreductase chain 5 (EC
1.6.5.3)
Length = 554
Score = 35.4 bits (80), Expect = 1.1
Identities = 87/424 (20%), Positives = 176/424 (40%), Gaps = 80/424 (18%)
Query: 13 FTMSIQVKDQILLRSLLFSPAPIISLG-----VVR*NVRLVRRTNLPSLMDPFRSLILMI 67
FT S Q+ L + +P P+ SL V L+R NL L +++ I++I
Sbjct: 185 FTKSAQIPFSTWLPMAMMAPTPVSSLVHSSTLVTAGIYLLIRYVNL--LDFNYKNYIMLI 242
Query: 68 *-IAMLGSVVIISYILGF*TLFLCKLHKQLFFTNSPLMFGLSFRSVFLKLI---EFVSLL 123
+ ML + ++ ++ L + QL F S L G S VFL L F SL+
Sbjct: 243 ASLTMLFAGLVANFELDLKKVVAYSTLSQLGFMMSMLSIG-STELVFLHLFIHAMFKSLM 301
Query: 124 FA-----LPSIISNKVLNLSLTISQR*NLFGRSSIHIVLCLCALVHIHAVVNLCVLLENF 178
F + + SN+ + + + + I +L LC + + +++E F
Sbjct: 302 FMCVGSYMHYMYSNQDIRMYYGMYYIYPMKSMILIFSILSLCGFPFLVGYYSKDLIIEMF 361
Query: 179 AWRIK*FSFSLA*MILSQL*RLKFFLWIHFLQSTRFILW--LFKK--KVIIL*LLLFLVK 234
+ K FS+ +I+ + + + + + +++F++ ++ K K++ + +++ ++
Sbjct: 362 FFS-KMIYFSMINLIIGTIFTVSYSFRMILVLTSKFLMMNVIYSKEDKIMCISMMMMMIF 420
Query: 235 NLVYL*MHQMLECPMAVVNLLRDHLNLRTIQDIALFAIGIITQWIFVTRCMVIPMQINLM 294
+L+Y + NL+ +L + INL+
Sbjct: 421 SLIY---------SKLIFNLMNFNL-----------------------------LGINLL 442
Query: 295 LLQMLLLMKAFLILRKMVKDLPLSLKLVLLKSNMVILLLYFSNHLWFLKHLPQILLAPII 354
++ L++ K ++ M + KL+LL + + YF F+ + +I+ II
Sbjct: 443 MIYKLMVFKMIMVGLIMGFNF---YKLILLNNKIG----YFKMSFLFMNLIYKIIYKKII 495
Query: 355 LLLLFHPFPQVSILLSLVLYILKIIIGLLIQVLMSIFAPLCICFIPFIKLN--LCMLLYL 412
+++ + +YI K II +L MS+ + I + +N L +L+YL
Sbjct: 496 MMMFTYE-----------VYIEKSIIEILSSKFMSVTLNIYELKISNLMINIYLTILIYL 544
Query: 413 MVLL 416
+ LL
Sbjct: 545 IYLL 548
>NU4M_SHEEP (O78755) NADH-ubiquinone oxidoreductase chain 4 (EC
1.6.5.3)
Length = 459
Score = 35.4 bits (80), Expect = 1.1
Identities = 46/195 (23%), Positives = 91/195 (46%), Gaps = 23/195 (11%)
Query: 278 WIFVTRCMVIPMQINLMLLQMLLLMKAFLILRKMVKDLPLS-----LKLVLLKSNMVILL 332
++F T +P+ + L+ +Q + FLIL+ V+ +P S + L + + MV +
Sbjct: 149 FLFYTLAGSLPLLVALIYIQNTMGSLNFLILQYWVQPMPNSWSNTFMWLACMMAFMVKMP 208
Query: 333 LYFSNHLWFLK-HLP-----QILLAPIILLLLFHPFPQVSILLSLVLYILKIIIGLLIQV 386
LY HLW K H+ ++LA I+L L + ++++LL+ + + +
Sbjct: 209 LY-GLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMRITLLLNPITDFMAYPF-----I 262
Query: 387 LMSIFAPLCICFIPFIKLNL-CMLLYLMVLL*LFTMLALLFFHLLSTLPMSYIHLISELT 445
++S++ + I + +L ++ Y V + +AL+ +L P SY+ + +
Sbjct: 263 MLSLWGMIMTSSICLRQTDLKSLIAYSSV-----SHMALVIVAILIQTPWSYMGATALMI 317
Query: 446 *FLFTNFALFCLTKS 460
T+ LFCL S
Sbjct: 318 AHGLTSSMLFCLANS 332
>FLIR_BUCAP (Q8KA35) Flagellar biosynthetic protein fliR
Length = 258
Score = 35.0 bits (79), Expect = 1.4
Identities = 58/238 (24%), Positives = 109/238 (45%), Gaps = 21/238 (8%)
Query: 170 NLCVLLENFAW---RIK*FSFSLA*MILSQL*RLKFFLWIHFLQSTRFILWLFKKKVIIL 226
NL +L+ NF W RI F FS A + Q K + + FL + +L K V +
Sbjct: 8 NLAILISNFFWPLVRILAF-FSTAPIFNDQNVNKKVKIILSFLIAFLIKPFLPKVNVELF 66
Query: 227 *LL-LFLVKNLVYL*MHQMLECP--MAVVNLLRDHLNLRTIQDIALF-------AIGIIT 276
++ LFL+ + + + L C A L + + L+ A F +I+
Sbjct: 67 SIIGLFLLFQQILIGIALGLTCQFLFAAFTLSGEIIALQIGLSFANFFNSNRYIGTSLIS 126
Query: 277 QWIFVTRCMVIPMQINLMLLQMLLLMKAFLILRKMVKDLPLSLKLVLLKSNMVILLLYFS 336
+W+ + + + +N+ L + +L+ +F + V L ++ + LK + I L +
Sbjct: 127 RWLNILNLLFF-LTLNVHLYLVFMLIDSFYKIPVDVNFLSANIFFIFLKFSSNIFL---N 182
Query: 337 NHLWFLKHLPQILLAPIILLLLFHPFPQVSILLSLVLYILKIIIGLLI-QVLMSIFAP 393
++ L + L++ +I+ +L PQ+SI + + L ++IG+LI LMS+ P
Sbjct: 183 GVMFALPIMIFFLISTLIMSILNRLSPQISIF--SIGFPLNLLIGILILYYLMSMSFP 238
>YAMB_SCHPO (Q10064) Hypothetical protein C1F5.11c in chromosome I
Length = 3655
Score = 34.7 bits (78), Expect = 1.9
Identities = 22/58 (37%), Positives = 32/58 (54%), Gaps = 4/58 (6%)
Query: 897 LLLITVSVNIPFPILFHMLVYL--TLILFLLCLLLL--ILNQNPMMRQSNMTAGNKQC 950
+L VS ++P P+ H+LVYL T L C+LLL L NP + + +T +K C
Sbjct: 2467 ILTSIVSSDMPIPLPPHLLVYLSKTYGLHHYCILLLENSLQNNPGLSEDELTVYHKSC 2524
>YT43_CAEEL (Q11071) Hypothetical protein B0416.3 in chromosome X
Length = 210
Score = 34.3 bits (77), Expect = 2.4
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 338 HLWFLKHLPQILLAPI-ILLLLFHPF--PQVSILLSLVLYILKIIIGLLIQVLMSIFAPL 394
H+ L L +L P + +++F F S++ S++ I+ +LI F
Sbjct: 54 HVLLLTKLISVLTIPFYVAIIIFISFFGNATSVMFSVI-----ILGSVLISTCYGAFRGA 108
Query: 395 CICFIPFIKLNLCMLLY---LMVLL*LFTMLALLFFHLLSTLPMSYI 438
+C IPF+ + L L+Y L+ +L L + +F L LP+ I
Sbjct: 109 KMCLIPFVIIQLVFLIYDLILITILLLAVVFPKMFLSALLRLPLEDI 155
>Y998_METJA (Q58404) Hypothetical protein MJ0998
Length = 241
Score = 33.9 bits (76), Expect = 3.2
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 329 VILLLYFSNHLWFLKHLPQILLAPIILLLLFHPFPQVSILLSLVLYILKII--IGLLIQV 386
VI++ Y N LW + ++ + + LL+ FHP + L+ L+L LKI L +Q
Sbjct: 13 VIVVSYIFNGLWSVFNIKHVFWVNLFLLIAFHP-QHLDGLIILLLIPLKIFSNFKLKLQC 71
Query: 387 LMSIFAPLCICFIPFIKLN---LCMLLYLMVLL*LFTMLALLFFHLLST 432
++++ L IK + +L+ V + + + L+ F +L T
Sbjct: 72 IIALVGILLTIIKGVIKSGFGWILRILFFFVRMMTVSFINLVVFSILLT 120
>NU4M_RABIT (O79436) NADH-ubiquinone oxidoreductase chain 4 (EC
1.6.5.3)
Length = 459
Score = 33.9 bits (76), Expect = 3.2
Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 21/196 (10%)
Query: 276 TQWIFVTRCMVIPMQINLMLLQMLLLMKAFLILRKMVKDLPLS-----LKLVLLKSNMVI 330
T ++F T +P+ + L+ LQ + FL+L+ M K + S + L + + +V
Sbjct: 147 TYFLFYTLMGSLPLLVALIYLQNSMGSLNFLLLQLMNKSITTSWSNSLMWLACMMAFLVK 206
Query: 331 LLLYFSNHLWFLK-HLP-----QILLAPIILLLLFHPFPQVSILLSLVLYILKIIIGLLI 384
+ LY HLW K H+ ++LA I+L L + +++ILLS + + +L
Sbjct: 207 MPLY-GLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMRITILLSPITDYMAYPFLMLS 265
Query: 385 QVLMSIFAPLCICFIPFIKLNLCMLLYLMVLL*LFTMLALLFFHLLSTLPMSYIHLISEL 444
M + + +C+ L + Y V + +AL+ +L P S++ + +
Sbjct: 266 LWGMIMTSSICLRQTDLKSL----IAYSSV-----SHMALVIVAILIQTPWSFMGATALM 316
Query: 445 T*FLFTNFALFCLTKS 460
T+ LFCL S
Sbjct: 317 IAHGLTSSLLFCLANS 332
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor
Length = 351
Score = 33.9 bits (76), Expect = 3.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 845 FHNHHLLSHHLHSPLLHNLHHY 866
FH+HHL HH H+P H+ HH+
Sbjct: 161 FHHHHLGYHHHHAPHHHHHHHH 182
>Y610_ENCCU (Q8SVF2) Hypothetical protein ECU06_0100
Length = 261
Score = 33.5 bits (75), Expect = 4.2
Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 213 RFILWLFKKKVIIL*LLLFLVKNLVYL*MHQMLECPMAVVNLLRDHLNLRTIQDIALFAI 272
RFI+ L L L NL ++ + P ++ N+L ++ +I IA+F +
Sbjct: 58 RFIIMLLPFSYSALECFLLFRNNLESSYRSELHKMPYSIFNVLLIAFSVISILSIAIFPL 117
Query: 273 GI-----ITQWIFVTRCMVIPMQINLMLLQMLLLMKAFLILRKMVKDLPLSLKLVLLKSN 327
++ + + C+++P + ML L+ ++ D+ + L+L
Sbjct: 118 STWSNNDVSSYSMLLPCLIVP--LTYMLSISCSLVSGSILFTDTGIDILIDASLLL---- 171
Query: 328 MVILLLYFSNHLWFL--KHLPQILLAPIILLLL 358
+LLL F W + K+ P + A +IL+L+
Sbjct: 172 CTLLLLVF----WIIESKYFPYFVFASLILVLI 200
>NU4M_APILI (P34853) NADH-ubiquinone oxidoreductase chain 4 (EC
1.6.5.3)
Length = 447
Score = 33.5 bits (75), Expect = 4.2
Identities = 47/230 (20%), Positives = 94/230 (40%), Gaps = 50/230 (21%)
Query: 223 VIIL*LLLFLVKNLVYL*MHQMLECP---------MAVVNLLRDHLNLRTIQDIALFA-- 271
+++L +L L+ +++YL M M + + ++NLL + NL I I +F
Sbjct: 4 LLLLIMLNMLMMSMIYLFMLFMNKMKNNLNLIIGNLIIINLLLNLFNLNWIDWIYIFCNL 63
Query: 272 --------IGIITQWIF-VTRCMVIPMQINLMLLQMLLLMKAFLILRKMVKDLPLSLKLV 322
+ ++T WIF + + +N + + +LL+ +SL LV
Sbjct: 64 SFNMYSYGLIMLTLWIFGLIFISLNNNSLNCLFMNLLLM---------------ISLLLV 108
Query: 323 LLKSNMVILLLYFSNHLWFLKHLPQILLAPIILLLLFHPFPQVSILLSLVLYILKIIIGL 382
L N+++ L++ + L I L++ + + L L +I L
Sbjct: 109 FLSMNLLLFYLFY-----------EFGLLLIFYLVVKWGYSENRWLSGFYLMFYTMIFSL 157
Query: 383 ----LIQVLMSIFAPLCICFIPFIKLNLCMLLYLMVLL*LFTMLALLFFH 428
+I + I L + + LNL M+L++ +L+ + + FH
Sbjct: 158 PMLYIIYYIYLIDYSLNFMLMEMLNLNLNMMLFIYLLMSFLVKIPIYLFH 207
Score = 32.7 bits (73), Expect = 7.1
Identities = 40/167 (23%), Positives = 77/167 (45%), Gaps = 21/167 (12%)
Query: 285 MVIPMQINLMLLQMLLLMKAFLILRKMVKDLPL--------SLKLVLLKSNMVILLLYFS 336
+++ + +N++++ M+ L F+ KM +L L +L L L N + + F
Sbjct: 4 LLLLIMLNMLMMSMIYLFMLFM--NKMKNNLNLIIGNLIIINLLLNLFNLNWIDWIYIFC 61
Query: 337 NHLWFLKHLPQILLAPIILLLLFHPFPQVSILLSLVLYILKIIIGLLIQVLMSIFAPLCI 396
N + + I+L I L+F S L L + +L +I LL+ + M++ +
Sbjct: 62 NLSFNMYSYGLIMLTLWIFGLIFISLNNNS-LNCLFMNLLLMISLLLVFLSMNL-----L 115
Query: 397 CFIPFIKLNLCMLLYLMVLL*L-----FTMLALLFFHLLSTLPMSYI 438
F F + L ++ YL+V + L+F+ ++ +LPM YI
Sbjct: 116 LFYLFYEFGLLLIFYLVVKWGYSENRWLSGFYLMFYTMIFSLPMLYI 162
>ER32_SCHPO (O13666) Probable C-5 sterol desaturase 2 (EC 1.3.3.-)
(Sterol-C5-desaturase 2) (Ergosterol delta 5,6
desaturase 2)
Length = 329
Score = 33.5 bits (75), Expect = 4.2
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 23/99 (23%)
Query: 829 IFLPLPLIFLILRILIFHNHHLLSHH-LHSPLLHNLHHYLLMSLYLLELPSEIKLHLHIY 887
+F + L L LI+ H L H L++P LH LHH ++
Sbjct: 151 LFFSIALFLLFSDFLIYWIHRALHHRWLYAP-LHKLHHKWIVP----------------- 192
Query: 888 MTTFAMHLFLLLITVSVNIP---FPILFHMLVYLTLILF 923
T ++ H F L S ++P FP F + Y+ L+LF
Sbjct: 193 -TPYSSHAFHYLDGYSQSLPYHMFPFFFPLNKYVYLLLF 230
>CYB_TRYBB (P00164) Cytochrome b
Length = 363
Score = 33.5 bits (75), Expect = 4.2
Identities = 33/158 (20%), Positives = 63/158 (38%), Gaps = 20/158 (12%)
Query: 326 SNMVILLLYFSNHLWFLKHLPQILLAPIILLLLF-HPFPQVSILLSLVLYILKIIIGLLI 384
SN +L + L F+ I ++ LLL+ H F +++++ +IL IG ++
Sbjct: 53 SNWYFVLFLWDFDLGFVIRSVHICFTSLLYLLLYIHIFKSITLIILFDTHILVWFIGFIL 112
Query: 385 QVLMSIFAPL-------------------CICFIPFIKLNLCMLLYLMVLL*LFTMLALL 425
V + I A + I +P + + LC ++ + FT+L L
Sbjct: 113 FVFIIIIAFIGYVLPCTMMSYWGLTVFSNIIATVPILGIWLCYWIWGSEFINDFTLLKLH 172
Query: 426 FFHLLSTLPMSYIHLISELT*FLFTNFALFCLTKSIFC 463
H+L + I ++ F + FC + +C
Sbjct: 173 VLHVLLPFILLIILILHLFCLHYFMSSDAFCDRFAFYC 210
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.357 0.162 0.524
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,537,188
Number of Sequences: 164201
Number of extensions: 4592101
Number of successful extensions: 25834
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 25629
Number of HSP's gapped (non-prelim): 180
length of query: 1390
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1267
effective length of database: 39,777,331
effective search space: 50397878377
effective search space used: 50397878377
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 72 (32.3 bits)
Medicago: description of AC146854.1