BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146329.6 + phase: 0
(486 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CCT1_HORSE (Q9XT26) Cyclin T1 (Cyclin T) (CycT1) 37 0.15
SSRP_CHICK (Q04678) Structure-specific recognition protein 1 (SS... 33 1.3
VIT_ICHUN (Q91062) Vitellogenin precursor (VTG) [Contains: Lipov... 33 1.7
PODX_RAT (Q9WTQ2) Podocalyxin precursor 33 1.7
GIC1_YEAST (P38785) GTPase-interacting component 1 33 1.7
ENL_HUMAN (Q03111) ENL protein 33 1.7
ECC1_ARATH (Q9MA98) DNA excision repair protein ERCC-1 (EC 3.1.-... 33 1.7
US45_LACLC (P22865) Secreted 45 kDa protein precursor 33 2.2
CCT1_PANTR (Q8HXN7) Cyclin T1 (Cyclin T) (CycT1) 33 2.2
CCT1_MOUSE (Q9QWV9) Cyclin T1 (Cyclin T) (CycT1) 33 2.2
CCT1_HUMAN (O60563) Cyclin T1 (Cyclin T) (CycT1) 33 2.2
Y745_ARATH (P59278) Hypothetical protein At1g51745 32 2.8
PAC_STRMU (P11657) Pac protein precursor 32 2.8
VIT1_CHICK (P87498) Vitellogenin I precursor (Minor vitellogenin... 32 3.7
VGLG_BRSVW (O10687) Major surface glycoprotein G (Attachment gly... 32 3.7
RP1_HUMAN (P56715) Oxygen-regulated protein 1 (Retinitis pigment... 32 3.7
LEF9_NPVAC (P41465) Late expression factor 9 32 3.7
ZFH2_DROME (P28167) Zinc finger protein 2 (Zinc finger homeodoma... 32 4.8
YM38_YEAST (Q03825) Hypothetical 85.0 kDa protein in HLJ1-SMP2 i... 32 4.8
YAMB_SCHPO (Q10064) Hypothetical protein C1F5.11c in chromosome I 32 4.8
>CCT1_HORSE (Q9XT26) Cyclin T1 (Cyclin T) (CycT1)
Length = 727
Score = 36.6 bits (83), Expect = 0.15
Identities = 34/107 (31%), Positives = 45/107 (41%), Gaps = 14/107 (13%)
Query: 9 HPSNRHHFSKVFSHIFNNSSSFSPPPSYTPQYSTNETTTHDKTSHSSNKDTELVVSSRSS 68
HPSN HH SH S S P+ T + +TS ++K T + SS SS
Sbjct: 515 HPSNHHHHHNHHSH----KHSHSQLPAGTGNKRPGDPKHSSQTSTLAHK-TYSLSSSFSS 569
Query: 69 SQISRKEGSGLAPKQSNQNDGQLF---PQIASTIKPQQDKSFAPMPS 112
S SRK G + G LF +IA + K F P+P+
Sbjct: 570 SSSSRKRG------PPEETGGALFDHPAKIAKSTKSSSINFFPPLPT 610
>SSRP_CHICK (Q04678) Structure-specific recognition protein 1
(SSRP1) (Recombination signal sequence recognition
protein) (T160) (Fragment)
Length = 669
Score = 33.5 bits (75), Expect = 1.3
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 37 TPQYSTNETTTHDKTSHSSNKDTELVVSSRSSSQISRKEGS----GLAPKQSNQN 87
+P S++ T + KT S K E V S SSS S+KE S G +P QS+++
Sbjct: 609 SPSKSSSSTKSSAKTMSESFKSKEFVSSDESSSAESKKEDSEDERGASPAQSSED 663
>VIT_ICHUN (Q91062) Vitellogenin precursor (VTG) [Contains:
Lipovitellin LV-1N; Lipovitellin LV-1C; Lipovitellin
LV-2]
Length = 1823
Score = 33.1 bits (74), Expect = 1.7
Identities = 33/123 (26%), Positives = 51/123 (40%), Gaps = 11/123 (8%)
Query: 9 HPSNRHHFSKVFSHIFNNSSSFS-------PPPSYTPQYSTNETTTHDKTSHSSNKDTEL 61
H + H S S ++SSS S PP + P+ + + +++ S SS+ +
Sbjct: 1212 HLGPQSHSSSSSSSSSSSSSSASKSFSTVKPPMTRKPRPARSSSSSSSSDSSSSSSSSSS 1271
Query: 62 VVSSRSSSQISRKEGSG---LAPKQSNQNDGQLFPQIASTIKPQQDKSFAPMPSPNARVD 118
SS SSS S E LA K NQ+ F + KPQ + P S ++
Sbjct: 1272 SSSSSSSSSSSSSESKSLEWLAVKDVNQSAFYNFKYVPQR-KPQTSRRHTPASSSSSSSS 1330
Query: 119 SKN 121
S +
Sbjct: 1331 SSS 1333
>PODX_RAT (Q9WTQ2) Podocalyxin precursor
Length = 485
Score = 33.1 bits (74), Expect = 1.7
Identities = 35/149 (23%), Positives = 57/149 (37%), Gaps = 11/149 (7%)
Query: 10 PSNRHHFSKVFSHIFNNSSSFSPPPSYTPQYSTNETTTHDKTSHSSNKDTELV------- 62
PSN S V + S+ SP P T +++ TTT D T+ ++ T V
Sbjct: 51 PSNATPKSSVQPPTPTSISTSSPDPKATQSSNSSVTTTSDSTTDRTSSSTSTVPTTSNSG 110
Query: 63 --VSS--RSSSQISRKEGSGLAPKQSNQNDGQLFPQIASTIKPQQDKSFAPMPSPNARVD 118
VSS +SS +I+ + L P ++ L P + + +P +
Sbjct: 111 QTVSSGGKSSDKITTALPTSLGPVNASSQPTDLNTSTKLPSTPTTNSTASPHQPVSHSEG 170
Query: 119 SKNVIQSDEHLRNNCDIYEGSWVLDDSFP 147
+QS ++ D W+L S P
Sbjct: 171 QHTTVQSSSASVSSSDNTTLLWILTTSKP 199
>GIC1_YEAST (P38785) GTPase-interacting component 1
Length = 314
Score = 33.1 bits (74), Expect = 1.7
Identities = 29/121 (23%), Positives = 46/121 (37%), Gaps = 22/121 (18%)
Query: 26 NSSSFSPPPSYTPQYSTNETTTHDKTSHSSNKDTELVVSSRSSSQISRKEGSGLAPKQSN 85
N ++ PP P Y T + +NK + + +SR+ GS KQS+
Sbjct: 68 NKNNIKLPP--LPNYMTINPNINSNHKSLTNKKKNFLGMFKKKDLLSRRHGSAKTAKQSS 125
Query: 86 QNDGQLFPQIASTIKPQQDK------------------SFAPMPSPNARVDSK--NVIQS 125
+ F I+ ++D S AP P P++ V SK NV+ +
Sbjct: 126 ISTPFDFHHISHANGKREDNPLESHEEKHDVESLVKFTSLAPQPRPDSNVSSKYSNVVMN 185
Query: 126 D 126
D
Sbjct: 186 D 186
>ENL_HUMAN (Q03111) ENL protein
Length = 559
Score = 33.1 bits (74), Expect = 1.7
Identities = 27/88 (30%), Positives = 40/88 (44%), Gaps = 4/88 (4%)
Query: 27 SSSFSPPPSYTPQYSTNETTTHDKTSHSSNKDTELVVSSRSSSQISRKEGSGLAPKQSNQ 86
SS S P T ++ E D S SS+K+ E ++SS SRK G G PK+
Sbjct: 188 SSKTSKPHKVTKEH--RERPRKDSESKSSSKELERE-QAKSSKDTSRKLGEGRLPKEEKA 244
Query: 87 NDGQ-LFPQIASTIKPQQDKSFAPMPSP 113
+ F + +K + +S +P P P
Sbjct: 245 PPPKAAFKEPKMALKETKLESTSPNPGP 272
>ECC1_ARATH (Q9MA98) DNA excision repair protein ERCC-1 (EC 3.1.-.-)
(AtERCC1) (AtRAD10) (Ultraviolet hypersensitive 7)
Length = 410
Score = 33.1 bits (74), Expect = 1.7
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 8 FHPSNRHHFSKVFSHIFNNSSSFSPPPSYTPQYSTNETTTHDKTSHSSNKDTELVVSSRS 67
F PS FS+ F+ + +S +SPPP + S+++ + + HSS++ + +S S
Sbjct: 50 FKPSQS--FSQAFAFV-KSSDVYSPPPPSSAAASSSQPSGASQVPHSSSQTHQTDGASSS 106
Query: 68 SSQISRKEGSGLAPKQSNQN 87
S+ ++ +G P + QN
Sbjct: 107 STPVA----TGSVPSNTTQN 122
>US45_LACLC (P22865) Secreted 45 kDa protein precursor
Length = 461
Score = 32.7 bits (73), Expect = 2.2
Identities = 25/89 (28%), Positives = 36/89 (40%)
Query: 27 SSSFSPPPSYTPQYSTNETTTHDKTSHSSNKDTELVVSSRSSSQISRKEGSGLAPKQSNQ 86
+SS S S PQ ST+ T S S++ ++ SS SSS S S + N
Sbjct: 263 TSSASASSSQAPQVSTSTDNTTSNASASNSSNSSSNSSSSSSSSSSSSSSSSNSNAGGNT 322
Query: 87 NDGQLFPQIASTIKPQQDKSFAPMPSPNA 115
N G T + +P+ +P A
Sbjct: 323 NSGTSTGNTGGTTTGGSGINSSPIGNPYA 351
>CCT1_PANTR (Q8HXN7) Cyclin T1 (Cyclin T) (CycT1)
Length = 725
Score = 32.7 bits (73), Expect = 2.2
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 9 HPSNRHHFSKVFSHIFNNSSSFSPPPSYTPQYSTNETTTHDKTSHSSNKDTELVVSSRSS 68
HPSN HH SH S S P T + +TS+ ++K T + SS SS
Sbjct: 512 HPSNHHHHHNHHSH----KHSHSQLPVGTGNKRPGDPKHSSQTSNLAHK-TYSLSSSFSS 566
Query: 69 SQISRKEGSGLAPKQSNQNDGQLFPQIASTIKPQQDKS 106
S +RK G S + G +F A K + S
Sbjct: 567 SSSTRKRG------PSEETGGAVFDHPAKIAKSTKSSS 598
>CCT1_MOUSE (Q9QWV9) Cyclin T1 (Cyclin T) (CycT1)
Length = 724
Score = 32.7 bits (73), Expect = 2.2
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 9 HPSNRHHFSKVFSHIFNNSSSFSPPPS---YTPQYSTNETTTHDKTSHSSNKDTELVVSS 65
HPSN HH SH ++ + P S P++S+ +T KT S S+
Sbjct: 512 HPSNHHHHHNHHSHRHSHLQLPAGPVSKRPSDPKHSSQTSTLAHKTYSLS--------ST 563
Query: 66 RSSSQISRKEGSGLAPKQSNQNDGQLFPQIASTIKPQQDKSFAPMPS 112
SSS +RK G P+++ +IA + K + F P+P+
Sbjct: 564 LSSSSSTRKRG---PPEETGAAVFDHPAKIAKSTKSSLNFPFPPLPT 607
>CCT1_HUMAN (O60563) Cyclin T1 (Cyclin T) (CycT1)
Length = 726
Score = 32.7 bits (73), Expect = 2.2
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 9 HPSNRHHFSKVFSHIFNNSSSFSPPPSYTPQYSTNETTTHDKTSHSSNKDTELVVSSRSS 68
HPSN HH SH S S P T + +TS+ ++K T + SS SS
Sbjct: 513 HPSNHHHHHNHHSH----KHSHSQLPVGTGNKRPGDPKHSSQTSNLAHK-TYSLSSSFSS 567
Query: 69 SQISRKEGSGLAPKQSNQNDGQLFPQIASTIKPQQDKS 106
S +RK G S + G +F A K + S
Sbjct: 568 SSSTRKRG------PSEETGGAVFDHPAKIAKSTKSSS 599
>Y745_ARATH (P59278) Hypothetical protein At1g51745
Length = 597
Score = 32.3 bits (72), Expect = 2.8
Identities = 35/138 (25%), Positives = 57/138 (40%), Gaps = 21/138 (15%)
Query: 155 PHIDEPFNCFLNGRRDNKYEKFRWQPKNCNMPRLNGKYMLKMLRGKRLVFVGDSLNRN-- 212
P EP NC L+G N +WQ K + N + M K +R V+ G+ N N
Sbjct: 428 PPASEPVNCILSGIEKN---TSKWQLKG----KRNSRQMSKKQEERRNVY-GEEANNNSS 479
Query: 213 -----MWDSLVCILSNSVKNK----SRIFEASGRQEFQTEDSYSFIFTDYNCSIEFFRSP 263
+++ + + ++ K + SR+ E SG+ S + DY S P
Sbjct: 480 TPHSTLYEVKIEVKASYTKPRVPLVSRMSELSGKAIVGHPLSVEILEEDY--SNGMVMPP 537
Query: 264 FLVQEWEMPGKKGSKKET 281
+ + +P K G K+ T
Sbjct: 538 VVAKAKSLPKKNGKKQTT 555
>PAC_STRMU (P11657) Pac protein precursor
Length = 1565
Score = 32.3 bits (72), Expect = 2.8
Identities = 23/77 (29%), Positives = 42/77 (53%), Gaps = 4/77 (5%)
Query: 49 DKTSHSSNKDTELVVSSRSSSQISRKEGSGLAPKQSNQNDGQLFPQIASTIK-PQQDKSF 107
D+T+ +S+ DT++V + + + E G A K++ Q+ +L Q+ TI+ P+ D
Sbjct: 39 DETTTTSDVDTKVVGTQTGNPATNLPEAQGSASKEAEQSQTKLERQMVHTIEVPKTDLDQ 98
Query: 108 APMPSPNARVDSKNVIQ 124
A + +A V NV+Q
Sbjct: 99 AAKDAKSAGV---NVVQ 112
>VIT1_CHICK (P87498) Vitellogenin I precursor (Minor vitellogenin)
[Contains: Lipovitellin I (LVI); Phosvitin (PV);
Lipovitellin II (LVII); YGP42]
Length = 1912
Score = 32.0 bits (71), Expect = 3.7
Identities = 29/128 (22%), Positives = 54/128 (41%), Gaps = 9/128 (7%)
Query: 25 NNSSSFSPPPSYTPQYSTNETTTHDKTSHSSNKDTELVVSSRSSSQ---ISRKEGSGLAP 81
++SSS S S + S++ ++ +++S SSN SS+S+S+ S + SG
Sbjct: 1182 SSSSSSSSSSSSSKSKSSSRSSKSNRSSSSSNSKDSSSSSSKSNSKGSSSSSSKASGTRQ 1241
Query: 82 KQSNQNDGQLFPQIA------STIKPQQDKSFAPMPSPNARVDSKNVIQSDEHLRNNCDI 135
K Q+ FP + S + +Q+ + S A +S++ S + +
Sbjct: 1242 KAKKQSKTTSFPHASAAEGERSVHEQKQETQSSSSSSSRASSNSRSTSSSTSSSSESSGV 1301
Query: 136 YEGSWVLD 143
W D
Sbjct: 1302 SHRQWKQD 1309
>VGLG_BRSVW (O10687) Major surface glycoprotein G (Attachment
glycoprotein G)
Length = 263
Score = 32.0 bits (71), Expect = 3.7
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 13 RHHFSKVFSHIFNNSSSFSPPPSYTPQYSTNETTTHDKTSHSSNKDTELVVSSRSSSQIS 72
++H S F+ S+ S + PQ +TT SHS N+ + S+S+ +
Sbjct: 84 QNHTSPFFTEHNYKSTHTSIQGTTLPQLPNTDTTRETTYSHSINETQDRKTKSQSTLPAT 143
Query: 73 RK---EGSGLAPKQSNQ--NDGQLFPQI 95
RK SG P +++Q N+ Q P +
Sbjct: 144 RKPPINPSGSNPPENHQDHNNSQTLPHV 171
>RP1_HUMAN (P56715) Oxygen-regulated protein 1 (Retinitis pigmentosa
RP1 protein) (Retinitis pigmentosa 1 protein)
Length = 2156
Score = 32.0 bits (71), Expect = 3.7
Identities = 26/131 (19%), Positives = 53/131 (39%), Gaps = 2/131 (1%)
Query: 18 KVFSHIFNNSSSFSPPPSYTPQYSTNETTTHDKTSHSSNKDTELVVSSRSSSQISRKEGS 77
K F N + FSP + +S+N + T S + + V++R I+
Sbjct: 593 KNFKTYGNTNDRFSPISADATHFSSNNSGTDKNISEAPASEASSTVTARIDRLINEFAQC 652
Query: 78 GLAPKQSNQNDGQLFPQIASTIKPQQDKSFAPMPSPNARVDSKNVIQSDEHLRNNCDIYE 137
GL + +N+ ++ +AS K + + + ++ +K ++ +E + I +
Sbjct: 653 GLT--KLPKNEKKILSSVASKKKKKSRQQAINSRYQDGQLATKGILNKNERINTKGRITK 710
Query: 138 GSWVLDDSFPL 148
V D PL
Sbjct: 711 EMIVQDSDSPL 721
>LEF9_NPVAC (P41465) Late expression factor 9
Length = 516
Score = 32.0 bits (71), Expect = 3.7
Identities = 32/135 (23%), Positives = 54/135 (39%), Gaps = 22/135 (16%)
Query: 25 NNSSSFSPPPSYTPQYSTNE-------TTTHDKTSHSSNKDTELVVSSRSSSQISRKEGS 77
N + PP S +Y + TT H S S + +++ ++ SS+ + K G
Sbjct: 215 NGVNEIMPPRSSVKRYYGRDVDNVRAWTTRHPNISQLSTQVSDVHINE-SSTDWNVKVGL 273
Query: 78 GLAPKQSNQNDGQLFPQIASTIKPQQDKSFAPMPSPNARVDSKNVIQSDEHLRNNC-DIY 136
G+ P + DG K +P PN+ +DS+ ++ D C D
Sbjct: 274 GIFPGANTDCDGD-------------KKIITFLPKPNSLIDSECLLYGDPRFNFICFDKN 320
Query: 137 EGSWVLDDSFPLYKS 151
S+V + LYK+
Sbjct: 321 RLSFVSQQIYYLYKN 335
>ZFH2_DROME (P28167) Zinc finger protein 2 (Zinc finger homeodomain
protein 2)
Length = 3005
Score = 31.6 bits (70), Expect = 4.8
Identities = 19/62 (30%), Positives = 31/62 (49%)
Query: 27 SSSFSPPPSYTPQYSTNETTTHDKTSHSSNKDTELVVSSRSSSQISRKEGSGLAPKQSNQ 86
SS+ SPP +Y + +T + S++ + E S SSS++ K GS Q+N
Sbjct: 305 SSTSSPPSTYASGEVLSPSTDNISNHKSTHCNQETEPPSSSSSEVEMKIGSMSTSPQTND 364
Query: 87 ND 88
+D
Sbjct: 365 SD 366
>YM38_YEAST (Q03825) Hypothetical 85.0 kDa protein in HLJ1-SMP2
intergenic region
Length = 758
Score = 31.6 bits (70), Expect = 4.8
Identities = 26/135 (19%), Positives = 57/135 (41%), Gaps = 9/135 (6%)
Query: 5 VNAFHPSNRHHFSKVF----SHIFNNSSSFSPPPSYTPQYSTNETTTHDKTSHSSNKDTE 60
++AF P + H + + S N+S+S P P+ + N ++ S++SN +
Sbjct: 571 MHAFAPQQQFHLPQHYKTNTSVPQNDSTSVFPLPNNNNNNNNNNNNNNNNNSNNSNNNN- 629
Query: 61 LVVSSRSSSQISRKEGSGLAPKQSNQNDGQLFPQIASTIKPQQDKSFAPMPSPNAR-VDS 119
++ +++ S + P + P I +TI+P++ + + +R V +
Sbjct: 630 ---NNNNNNNNSNNTPTVSQPSSKCTSSSSTTPNITTTIQPKRKQRVGKTKTKESRKVAA 686
Query: 120 KNVIQSDEHLRNNCD 134
+ + L N D
Sbjct: 687 AQKVMKSKKLEQNGD 701
>YAMB_SCHPO (Q10064) Hypothetical protein C1F5.11c in chromosome I
Length = 3655
Score = 31.6 bits (70), Expect = 4.8
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 381 SETEPMKTESTDLSENPPMMRTIESVIKGMKTPVVYLN---ISKMTDFRHDAHPSMYRNM 437
S E +K EST++ E + + + + + + + L I + DF + ++YRN
Sbjct: 11 SSIELLKAESTEIEEKIKLTKILITKVSSISSDASQLYAELIPLLLDFLRNTEVNLYRNS 70
Query: 438 NMSEETKKYMLKHQDCSH 455
+++E + + Q C+H
Sbjct: 71 SVNELKIEALTLIQSCAH 88
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.132 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,783,076
Number of Sequences: 164201
Number of extensions: 2729442
Number of successful extensions: 7175
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 7107
Number of HSP's gapped (non-prelim): 72
length of query: 486
length of database: 59,974,054
effective HSP length: 114
effective length of query: 372
effective length of database: 41,255,140
effective search space: 15346912080
effective search space used: 15346912080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146329.6