BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC142094.8 - phase: 0 /pseudo
         (82 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

PTFB_BACAM (P41029) PTS system, fructose-specific IIBC component...    39  0.002
PTFB_RHOCA (P23387) PTS system, fructose-specific IIBC component...    38  0.004
CAID_SHIFL (P59395) Carnitinyl-CoA dehydratase (EC 4.2.1.-) (Cro...    31  0.65
CAID_ECOLI (P31551) Carnitinyl-CoA dehydratase (EC 4.2.1.-) (Cro...    31  0.65
CAID_ECOL6 (Q8FLA6) Carnitinyl-CoA dehydratase (EC 4.2.1.-) (Cro...    31  0.65
CAID_ECO57 (Q8XA35) Carnitinyl-CoA dehydratase (EC 4.2.1.-) (Cro...    31  0.65
CAID_SALTY (Q8ZRX5) Carnitinyl-CoA dehydratase (EC 4.2.1.-) (Cro...    30  1.4
CAID_SALTI (Q8Z9L5) Carnitinyl-CoA dehydratase (EC 4.2.1.-) (Cro...    30  1.4
PTFB_ECOLI (P20966) PTS system, fructose-specific IIBC component...    29  1.9
CRCB_METJA (Q58918) Protein crcB homolog                               28  4.2
YQGP_BACSU (P54493) Hypothetical protein yqgP                          27  7.2
TAT2_HUMAN (Q93075) TatD DNase domain containing deoxyribonuclea...    27  7.2
Y420_METJA (Q57863) Hypothetical protein MJ0420                        27  9.3

>PTFB_BACAM (P41029) PTS system, fructose-specific IIBC component
           (EIIBC-Fru) (Fructose-permease IIBC component)
           (Phosphotransferase enzyme II, BC component) (EC
           2.7.1.69) (EII-Fru) (Fragment)
          Length = 304

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 17  GIVPIVNNFGLIGGLIPGFLLGFVLLCKKDPFVLPDQKLHKRCLPIICFILLSTGWTGVL 76
           G +    N G +GGLI GFL G+V++  K  FV   Q L     P++ + LL    TGVL
Sbjct: 55  GFMATQANAGFLGGLIAGFLAGYVVILLKKLFVFIPQSL-DGLKPVLIYPLLGIFITGVL 113


>PTFB_RHOCA (P23387) PTS system, fructose-specific IIBC component
           (EIIBC-Fru) (Fructose-permease IIBC component)
           (Phosphotransferase enzyme II, BC component) (EC
           2.7.1.69) (EII-Fru)
          Length = 578

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 23/70 (32%), Positives = 38/70 (53%), Gaps = 4/70 (5%)

Query: 7   GMVPVFNLTIGIVPIVNNFGLIGGLIPGFLLGFVLLCKKDPFVLPDQKLHKRCLPIICFI 66
           G+ P   L  G++ +  N G +GG++ GFL G+V    +D   LP  +  +   P++   
Sbjct: 313 GLTP--GLIGGMLAVNLNAGFLGGIVAGFLAGYVARWLRDAIKLP--RTLEGLKPVLILP 368

Query: 67  LLSTGWTGVL 76
           LLST  TG++
Sbjct: 369 LLSTAITGLI 378


>CAID_SHIFL (P59395) Carnitinyl-CoA dehydratase (EC 4.2.1.-)
           (Crotonobetainyl-CoA hydratase)
          Length = 260

 Score = 30.8 bits (68), Expect = 0.65
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 7   GMVPVFNLTIGIVPIVNNFGLIGGLIPGFLLGFVLLCKKDPFVLPDQKL 55
           G+  +FNL   ++  VN +   GG        F++      F LP+ KL
Sbjct: 85  GLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKL 133


>CAID_ECOLI (P31551) Carnitinyl-CoA dehydratase (EC 4.2.1.-)
           (Crotonobetainyl-CoA hydratase)
          Length = 260

 Score = 30.8 bits (68), Expect = 0.65
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 7   GMVPVFNLTIGIVPIVNNFGLIGGLIPGFLLGFVLLCKKDPFVLPDQKL 55
           G+  +FNL   ++  VN +   GG        F++      F LP+ KL
Sbjct: 85  GLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKL 133


>CAID_ECOL6 (Q8FLA6) Carnitinyl-CoA dehydratase (EC 4.2.1.-)
           (Crotonobetainyl-CoA hydratase)
          Length = 260

 Score = 30.8 bits (68), Expect = 0.65
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 7   GMVPVFNLTIGIVPIVNNFGLIGGLIPGFLLGFVLLCKKDPFVLPDQKL 55
           G+  +FNL   ++  VN +   GG        F++      F LP+ KL
Sbjct: 85  GLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKL 133


>CAID_ECO57 (Q8XA35) Carnitinyl-CoA dehydratase (EC 4.2.1.-)
           (Crotonobetainyl-CoA hydratase)
          Length = 260

 Score = 30.8 bits (68), Expect = 0.65
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 7   GMVPVFNLTIGIVPIVNNFGLIGGLIPGFLLGFVLLCKKDPFVLPDQKL 55
           G+  +FNL   ++  VN +   GG        F++      F LP+ KL
Sbjct: 85  GLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKL 133


>CAID_SALTY (Q8ZRX5) Carnitinyl-CoA dehydratase (EC 4.2.1.-)
           (Crotonobetainyl-CoA hydratase)
          Length = 260

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 7   GMVPVFNLTIGIVPIVNNFGLIGGLIPGFLLGFVLLCKKDPFVLPDQKL 55
           G+  +F+L   ++  VN +   GG        F++  +   F LP+ KL
Sbjct: 85  GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKL 133


>CAID_SALTI (Q8Z9L5) Carnitinyl-CoA dehydratase (EC 4.2.1.-)
           (Crotonobetainyl-CoA hydratase)
          Length = 260

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 7   GMVPVFNLTIGIVPIVNNFGLIGGLIPGFLLGFVLLCKKDPFVLPDQKL 55
           G+  +F+L   ++  VN +   GG        F++  +   F LP+ KL
Sbjct: 85  GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKL 133


>PTFB_ECOLI (P20966) PTS system, fructose-specific IIBC component
           (EIIBC-Fru) (Fructose-permease IIBC component)
           (Phosphotransferase enzyme II, BC component) (EC
           2.7.1.69) (EII-Fru)
          Length = 563

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 7   GMVPVFNLTIGIVPIVNNFGLIGGLIPGFLLGFVLLCKKDPFVLPDQKLHKRCLPIICFI 66
           G+ P   L  G++ +    G IGG+I GFL G++         LP     +   PI+   
Sbjct: 298 GLTP--GLIGGMLAVSTGSGFIGGIIAGFLAGYIAKLISTQLKLPQSM--EALKPILIIP 353

Query: 67  LLST 70
           L+S+
Sbjct: 354 LISS 357


>CRCB_METJA (Q58918) Protein crcB homolog
          Length = 124

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 18/69 (26%)

Query: 14 LTIGIVPIVNNFGLIGG-----LIPGFLLGFVLLCKKDPFVLPDQKLHKRCLPIICFILL 68
          L  GIVP+   FGL  G     LI  F+LGF+L C     +  + KL            +
Sbjct: 21 LISGIVPV--KFGLPTGTLAVNLIGSFILGFLLYCSLFAPIPTEYKL-----------FI 67

Query: 69 STGWTGVLT 77
           TG+ G LT
Sbjct: 68 GTGFCGALT 76


>YQGP_BACSU (P54493) Hypothetical protein yqgP
          Length = 507

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 13/79 (16%)

Query: 1   MFNLSIG----MVPVFNLTIGI-VPIVNNFGLIGGLIPGFLLGFVL-LCKKDPFVLPDQK 54
           MF  +IG    ++ + NL  G  V  ++N G IGGLI GF     L L K   F      
Sbjct: 308 MFLRTIGTNIIVIIIINLGFGFAVSNIDNSGHIGGLIGGFFAAAALGLPKAGAF------ 361

Query: 55  LHKRCLPIICFILLSTGWT 73
             KR L  +  I L+ G++
Sbjct: 362 -GKRLLSAVFLIALAVGFS 379


>TAT2_HUMAN (Q93075) TatD DNase domain containing deoxyribonuclease
           2 (EC 3.1.21.-)
          Length = 761

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 17/42 (40%), Positives = 22/42 (51%), Gaps = 9/42 (21%)

Query: 48  FVLPDQKLHKRCL----PII-----CFILLSTGWTGVLTKGS 80
           FV PD K+H+ C     P+I      F  +S G+T VLT  S
Sbjct: 645 FVPPDYKIHRHCFTGSYPVIEPLLKYFPNMSVGFTAVLTYSS 686


>Y420_METJA (Q57863) Hypothetical protein MJ0420
          Length = 380

 Score = 26.9 bits (58), Expect = 9.3
 Identities = 22/69 (31%), Positives = 35/69 (49%), Gaps = 13/69 (18%)

Query: 6  IGMVPVFNLTIGIVPIVNNFGL-----IGGLIPGFLLGFVLLCKKDPFVLPDQKLHKRCL 60
          IG + +F L     P +++ GL     I G++  F++GF L     PF+ P Q    R +
Sbjct: 24 IGHLMIFILAF---PYLDDIGLYSLFKILGVLSIFIVGFFL-----PFIFPMQIKFNRHI 75

Query: 61 PIICFILLS 69
            + F+LLS
Sbjct: 76 LYLSFLLLS 84


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.331    0.154    0.501 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,410,157
Number of Sequences: 164201
Number of extensions: 408916
Number of successful extensions: 1022
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1013
Number of HSP's gapped (non-prelim): 13
length of query: 82
length of database: 59,974,054
effective HSP length: 58
effective length of query: 24
effective length of database: 50,450,396
effective search space: 1210809504
effective search space used: 1210809504
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)