BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140104.12 - phase: 0
(279 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RS2_ARATH (P49688) 40S ribosomal protein S2 472 e-133
RS2_HUMAN (P15880) 40S ribosomal protein S2 (S4) (LLREP3 protein) 392 e-109
RS2_RAT (P27952) 40S ribosomal protein S2 391 e-108
RS2_MOUSE (P25444) 40S ribosomal protein S2 (S4) (LLREP3 protein) 391 e-108
RS2_BOVIN (O18789) 40S ribosomal protein S2 (Fragment) 388 e-108
RS2_DROME (P31009) 40S ribosomal protein S2 (Strings of pearls p... 388 e-108
RS2_URECA (P49154) 40S ribosomal protein S2 383 e-106
RS2_ICTPU (Q90YS3) 40S ribosomal protein S2 370 e-102
RS2_CAEEL (P51403) 40S ribosomal protein S2 365 e-101
RS2_SCHPO (O74892) 40S ribosomal protein S2 352 4e-97
RS2_DICDI (P27685) 40S ribosomal protein S2 (S4) (LLRep3 protein) 340 2e-93
RS2_CRIGR (P46791) 40S ribosomal protein S2 (Fragment) 331 1e-90
RS2_LEIAM (O43992) 40S ribosomal protein S2 324 1e-88
RS2_YEAST (P25443) 40S ribosomal protein S2 (S4) (YS5) (RP12) (O... 313 4e-85
RS5_AERPE (Q9YF95) 30S ribosomal protein S5P 188 1e-47
RS5_SULSO (Q9UX87) 30S ribosomal protein S5P 181 1e-45
RS5_METKA (Q8TZA6) 30S ribosomal protein S5P 179 5e-45
RS5_SULTO (Q975K0) 30S ribosomal protein S5P 179 9e-45
RS5_METMA (Q8PV30) 30S ribosomal protein S5P 179 9e-45
RS5_METAC (Q8TRS7) 30S ribosomal protein S5P 179 9e-45
>RS2_ARATH (P49688) 40S ribosomal protein S2
Length = 285
Score = 472 bits (1214), Expect = e-133
Identities = 233/261 (89%), Positives = 243/261 (92%), Gaps = 3/261 (1%)
Query: 3 ERGGDRGGFGSGFGGRGGDRGGRGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEG 62
ERGG+RG FG GFGGRGG RG RGGRG GRGGRR GGR EEEKWVPVTKLGRLV G
Sbjct: 11 ERGGERGDFGRGFGGRGG-RGDRGGRGRGGRGGRR--GGRASEEEKWVPVTKLGRLVAAG 67
Query: 63 KIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDN 122
I+ +EQIYLHSLP+KE+QIID L+GPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD
Sbjct: 68 HIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDG 127
Query: 123 NGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 182
NGHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV
Sbjct: 128 NGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 187
Query: 183 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTP 242
RMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL KTYGFLTP
Sbjct: 188 RMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTP 247
Query: 243 EFWKETRFSKSPFQEYTDLLA 263
EFWKETRFS+SP+QE+TD LA
Sbjct: 248 EFWKETRFSRSPYQEHTDFLA 268
>RS2_HUMAN (P15880) 40S ribosomal protein S2 (S4) (LLREP3 protein)
Length = 293
Score = 392 bits (1007), Expect = e-109
Identities = 192/264 (72%), Positives = 221/264 (82%), Gaps = 7/264 (2%)
Query: 1 MAERGGDRGGFGSGFGGRGGDRGGRGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVK 60
M RGG RGGFGSG GRG RG RGRG R A G + E+++W+PVTKLGRLVK
Sbjct: 19 MGNRGGFRGGFGSGIRGRGRGRG-------RGRGRGRGARGGKAEDKEWMPVTKLGRLVK 71
Query: 61 EGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVG 120
+ KI+SLE+IYL SLPIKE +IID +G +LKDEV+KIMPVQKQTRAGQRTRFKAFV +G
Sbjct: 72 DMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIG 131
Query: 121 DNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSV 180
D NGHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIGKPHTVPCKVTG+CGSV
Sbjct: 132 DYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSV 191
Query: 181 TVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFL 240
VR++PAPRG+GIV+A VPKK+L AGIDD +TS+RG T TLGNF KATFD + KTY +L
Sbjct: 192 LVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYL 251
Query: 241 TPEFWKETRFSKSPFQEYTDLLAK 264
TP+ WKET F+KSP+QE+TD L K
Sbjct: 252 TPDLWKETVFTKSPYQEFTDHLVK 275
>RS2_RAT (P27952) 40S ribosomal protein S2
Length = 293
Score = 391 bits (1004), Expect = e-108
Identities = 191/261 (73%), Positives = 220/261 (84%), Gaps = 7/261 (2%)
Query: 4 RGGDRGGFGSGFGGRGGDRGGRGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEGK 63
RGG RGGFGSG GRG RG RGRG R A G + E+++W+PVTKLGRLVK+ K
Sbjct: 22 RGGFRGGFGSGLRGRGRGRG-------RGRGRGRGARGGKAEDKEWIPVTKLGRLVKDMK 74
Query: 64 IRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNN 123
I+SLE+IYL SLPIKE +IID +G +LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD N
Sbjct: 75 IKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYN 134
Query: 124 GHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 183
GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIGKPHTVPCKVTG+CGSV VR
Sbjct: 135 GHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVR 194
Query: 184 MVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPE 243
++PAPRG+GIV+A VPKK+L AGIDD +TS+RG T TLGNF KATFD + KTY +LTP+
Sbjct: 195 LIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPD 254
Query: 244 FWKETRFSKSPFQEYTDLLAK 264
WKET F+KSP+QE+TD L K
Sbjct: 255 LWKETVFTKSPYQEFTDHLVK 275
>RS2_MOUSE (P25444) 40S ribosomal protein S2 (S4) (LLREP3 protein)
Length = 293
Score = 391 bits (1004), Expect = e-108
Identities = 191/261 (73%), Positives = 220/261 (84%), Gaps = 7/261 (2%)
Query: 4 RGGDRGGFGSGFGGRGGDRGGRGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEGK 63
RGG RGGFGSG GRG RG RGRG R A G + E+++W+PVTKLGRLVK+ K
Sbjct: 22 RGGFRGGFGSGLRGRGRGRG-------RGRGRGRGARGGKAEDKEWIPVTKLGRLVKDMK 74
Query: 64 IRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNN 123
I+SLE+IYL SLPIKE +IID +G +LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD N
Sbjct: 75 IKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYN 134
Query: 124 GHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 183
GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIGKPHTVPCKVTG+CGSV VR
Sbjct: 135 GHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVR 194
Query: 184 MVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPE 243
++PAPRG+GIV+A VPKK+L AGIDD +TS+RG T TLGNF KATFD + KTY +LTP+
Sbjct: 195 LIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPD 254
Query: 244 FWKETRFSKSPFQEYTDLLAK 264
WKET F+KSP+QE+TD L K
Sbjct: 255 LWKETVFTKSPYQEFTDHLVK 275
>RS2_BOVIN (O18789) 40S ribosomal protein S2 (Fragment)
Length = 286
Score = 388 bits (997), Expect = e-108
Identities = 190/264 (71%), Positives = 219/264 (81%), Gaps = 7/264 (2%)
Query: 1 MAERGGDRGGFGSGFGGRGGDRGGRGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVK 60
M RGG RGGFGSG GRG RG GRG RGG+ E+++W+PVTKLGRLVK
Sbjct: 12 MGGRGGFRGGFGSGVRGRGRGRGRGRGRGGGARGGKA-------EDKEWLPVTKLGRLVK 64
Query: 61 EGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVG 120
+ KI+SLE+IYL SLPIKE +IID +G +LKDEV+KIMPVQKQTRAGQRTRFKAFV +G
Sbjct: 65 DMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIG 124
Query: 121 DNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSV 180
D NGHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIGKPHTVPCKVTG+CGSV
Sbjct: 125 DYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSV 184
Query: 181 TVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFL 240
VR++P PRG+GIV+A VPKK+L AGIDD +TS+RG T TLGNF KATFD + KTY +L
Sbjct: 185 LVRLIPPPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYL 244
Query: 241 TPEFWKETRFSKSPFQEYTDLLAK 264
TP+ WKET F+KSP+QE+TD L K
Sbjct: 245 TPDLWKETVFTKSPYQEFTDHLVK 268
>RS2_DROME (P31009) 40S ribosomal protein S2 (Strings of pearls
protein)
Length = 267
Score = 388 bits (996), Expect = e-108
Identities = 190/268 (70%), Positives = 224/268 (82%), Gaps = 6/268 (2%)
Query: 1 MAERGGDRGGFGSGFGGRGGDRGGRGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVK 60
MA+ R GF GFG RGG RGGRG RGRG R G+ E+ ++WVPVTKLGRLV+
Sbjct: 1 MADEAPARSGFRGGFGSRGG----RGGRG-RGRGRWARGRGK-EDSKEWVPVTKLGRLVR 54
Query: 61 EGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVG 120
EGKI+SLE+IYL+SLPIKE +IID +G +LKDEV+KIMPVQKQTRAGQRTRFKAFV +G
Sbjct: 55 EGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIG 114
Query: 121 DNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSV 180
DNNGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSV
Sbjct: 115 DNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSV 174
Query: 181 TVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFL 240
+VR++PAPRG+GIV+A VPKK+L AGI+D +TS+RGST TLGNF KAT+ + KTY +L
Sbjct: 175 SVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYL 234
Query: 241 TPEFWKETRFSKSPFQEYTDLLAKPTAK 268
TP+ WKE +P+Q Y+D L+KPT +
Sbjct: 235 TPDLWKEMPLGSTPYQAYSDFLSKPTPR 262
>RS2_URECA (P49154) 40S ribosomal protein S2
Length = 278
Score = 383 bits (984), Expect = e-106
Identities = 189/260 (72%), Positives = 217/260 (82%), Gaps = 8/260 (3%)
Query: 6 GDRGGFGSGFGGRGGDRGGRGGRGDRGRG-GRRRAGGRREEEEKWVPVTKLGRLVKEGKI 64
G RGGF GFGGRG RG RGRG GR R G ++ +++WVPVTKLGRLVK+ KI
Sbjct: 9 GGRGGFRGGFGGRGRGRG-------RGRGRGRGRGRGAKDGDKEWVPVTKLGRLVKDMKI 61
Query: 65 RSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNG 124
++LE+IYL SLPIKE +IID +G LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD NG
Sbjct: 62 KTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNG 121
Query: 125 HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM 184
HVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSV VR+
Sbjct: 122 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVLVRL 181
Query: 185 VPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEF 244
+PAPRG+GIV+A VPKK+L AGIDD +TS+RG T TLGNF KAT+ + TY +LTP+
Sbjct: 182 IPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNFAKATYAAIAATYSYLTPDL 241
Query: 245 WKETRFSKSPFQEYTDLLAK 264
W+ET F+KSP+QEYTD LAK
Sbjct: 242 WRETVFTKSPYQEYTDYLAK 261
>RS2_ICTPU (Q90YS3) 40S ribosomal protein S2
Length = 277
Score = 370 bits (949), Expect = e-102
Identities = 177/231 (76%), Positives = 204/231 (87%)
Query: 34 GGRRRAGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKD 93
G R R GR+ E+++WVPVTKLGRLVK+ KI+SLE+IYL+SLPIKE +IID +G LKD
Sbjct: 30 GERARTPGRKAEDKEWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKD 89
Query: 94 EVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIP 153
EV+KIMPVQKQTRAGQRTRFKAFV +GD NGHVGLGVKCSKEVATAIRGAIILAKLS+IP
Sbjct: 90 EVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIP 149
Query: 154 VRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFT 213
VRRGYWGNKIGKPHTVPCKVTG+CGSV VR++PAPRG+GIV+A VPKK+L AGIDD +T
Sbjct: 150 VRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYT 209
Query: 214 SSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSKSPFQEYTDLLAK 264
S+RG T TLGNF KATFD + KTY +LTP+ WKET F+KSP+QE+TD LAK
Sbjct: 210 SARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLAK 260
>RS2_CAEEL (P51403) 40S ribosomal protein S2
Length = 272
Score = 365 bits (937), Expect = e-101
Identities = 185/270 (68%), Positives = 215/270 (79%), Gaps = 13/270 (4%)
Query: 7 DRGGFGSGFGGRGGDRGG----------RGGRGDRG-RGGRR-RAGGRREEEEKWVPVTK 54
DRGGF SGFGGRGG RGG RGGRG RG RGGR RAG E+E +W PVTK
Sbjct: 3 DRGGFQSGFGGRGGGRGGARPAGDRPAGRGGRGGRGGRGGRGGRAGRGGEKETEWTPVTK 62
Query: 55 LGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFK 114
LGRLVKE KI +LE+IYL+SLPIKE +IID L LKDEV+KI PVQKQT AGQRTRFK
Sbjct: 63 LGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCS-NLKDEVLKISPVQKQTTAGQRTRFK 121
Query: 115 AFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVT 174
AFV +GD+ GHVGLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKIG PHTVPCKVT
Sbjct: 122 AFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVT 181
Query: 175 GKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLM 234
GKC SV VR++PAPRG+GIV+A VPKK+L AGI+D +T+++GST TLGNF KAT+ L
Sbjct: 182 GKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQ 241
Query: 235 KTYGFLTPEFWKETRFSKSPFQEYTDLLAK 264
+TY +LTP+ WKE KSP+Q + + LA+
Sbjct: 242 RTYSYLTPDLWKEEALEKSPYQRHHEYLAR 271
>RS2_SCHPO (O74892) 40S ribosomal protein S2
Length = 253
Score = 352 bits (904), Expect = 4e-97
Identities = 172/251 (68%), Positives = 207/251 (81%), Gaps = 5/251 (1%)
Query: 18 RGGDRGGRGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPI 77
RG RGGRGGRG RGRG R G +R+EE++WVPVTKLGRLVK GKI+S+E+IYL+SLPI
Sbjct: 7 RGFGRGGRGGRG-RGRG---RRGAKRDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPI 62
Query: 78 KEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVA 137
KE+QI+D + P L DEVMK++PVQKQTRAGQRTRFKAFVV+GD++GHVGLG+KC+KEVA
Sbjct: 63 KEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVA 121
Query: 138 TAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 197
TAIRGAII+ KLS++P+RRGYWG +G PHTVP KV+GKCGSVTVR+VPAPRG+G+VAA
Sbjct: 122 TAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAP 181
Query: 198 VPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSKSPFQE 257
V K+ LQ AGI+D +T SRGSTKTLGNFVKA F TYG LTP W E F ++P +E
Sbjct: 182 VTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEE 241
Query: 258 YTDLLAKPTAK 268
Y D+L + K
Sbjct: 242 YADILMQTEKK 252
>RS2_DICDI (P27685) 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 265
Score = 340 bits (873), Expect = 2e-93
Identities = 167/246 (67%), Positives = 200/246 (80%), Gaps = 2/246 (0%)
Query: 19 GGDRGGRGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIK 78
G R RG G RGG R G + E + W PVTKLGRLV G + ++ +IYL SLPIK
Sbjct: 19 GAGRPQRGAGGAPQRGGPRPQRGGQGETKSWTPVTKLGRLVALGLVENIHEIYLFSLPIK 78
Query: 79 EHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVAT 138
E+QIID + LKDEVMKI+PVQKQTRAGQRTRFKAFVVVGD+NGHVGLGVKC+KEVAT
Sbjct: 79 EYQIIDKFLN--LKDEVMKIVPVQKQTRAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVAT 136
Query: 139 AIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 198
AI GAI+ AKLSVIPVRRGYWGNK+G PHTVP KVTGKCGSV VR+VPAPRG+GIVAARV
Sbjct: 137 AISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARV 196
Query: 199 PKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSKSPFQEY 258
PKK+LQ+AG+DDV+TSSRG T+T+GNFV ATF + KT+ +LTP+ W+E + K+P+QE+
Sbjct: 197 PKKLLQYAGVDDVYTSSRGKTRTMGNFVMATFFAITKTFAYLTPDLWREVKLIKTPYQEH 256
Query: 259 TDLLAK 264
+ L++
Sbjct: 257 SAKLSE 262
>RS2_CRIGR (P46791) 40S ribosomal protein S2 (Fragment)
Length = 202
Score = 331 bits (849), Expect = 1e-90
Identities = 158/202 (78%), Positives = 181/202 (89%)
Query: 50 VPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQ 109
+PVTKLGRLVK+ KI+SLE+IYL SLPIKE +IID +G +LKDEV+KIMPVQKQTRAGQ
Sbjct: 1 IPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQ 60
Query: 110 RTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTV 169
RTRFKAFV +GD NGHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIGKPHTV
Sbjct: 61 RTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTV 120
Query: 170 PCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKAT 229
PCKVTG+CGSV VR++PAPRG+GIV+A VPKK+L AGIDD +TS+RG T TLGNF KAT
Sbjct: 121 PCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKAT 180
Query: 230 FDCLMKTYGFLTPEFWKETRFS 251
FD + KTY +LTP+ WKET F+
Sbjct: 181 FDAISKTYSYLTPDLWKETVFT 202
>RS2_LEIAM (O43992) 40S ribosomal protein S2
Length = 265
Score = 324 bits (831), Expect = 1e-88
Identities = 163/251 (64%), Positives = 199/251 (78%), Gaps = 11/251 (4%)
Query: 17 GRGGDRGGRGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLP 76
GRG RGGRGGRG RGRGG EE++WVP TKLGRLVK K+ SLE+I+L S+P
Sbjct: 23 GRG--RGGRGGRG-RGRGGPG-------EEKEWVPCTKLGRLVKAQKVTSLEEIFLFSMP 72
Query: 77 IKEHQIIDTLVGP-TLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKE 135
IKEHQI+DTL+ L DE+MKI PVQK T AGQRTRFKAF VVGD +GH+G+G + KE
Sbjct: 73 IKEHQIVDTLIAEGKLHDEMMKIYPVQKATSAGQRTRFKAFNVVGDCDGHIGIGARVGKE 132
Query: 136 VATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVA 195
V+ AIR ++I AKL+++PVRRGYWGNKIG+PHT+P KVTGKCGSV VR+VPAPRG+GIVA
Sbjct: 133 VSLAIRASMIAAKLNIVPVRRGYWGNKIGEPHTIPMKVTGKCGSVAVRLVPAPRGTGIVA 192
Query: 196 ARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSKSPF 255
A VPKK+L+FAG++DV+TSSRG T+T GN + ATF L KTYGFLTP+ W +T S+ P
Sbjct: 193 APVPKKILEFAGVEDVYTSSRGKTRTHGNLIMATFYALRKTYGFLTPDLWADTEPSRDPT 252
Query: 256 QEYTDLLAKPT 266
E+ +LLA+ T
Sbjct: 253 DEHGELLAEMT 263
>RS2_YEAST (P25443) 40S ribosomal protein S2 (S4) (YS5) (RP12)
(Omnipotent suppressor protein SUP44)
Length = 253
Score = 313 bits (801), Expect = 4e-85
Identities = 155/236 (65%), Positives = 183/236 (76%), Gaps = 1/236 (0%)
Query: 25 RGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIID 84
RGG G R RG R G R EE+ WVPVTKLGRLVK GKI ++E+I+LHSLP+KE QIID
Sbjct: 10 RGGFGGRNRGRPNRRGPRNTEEKGWVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIID 69
Query: 85 TLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAI 144
TL+ P L+DEVM I PVQKQTRAGQRTRFKA VVVGD+NGHVGLG+K +KEVA AIR I
Sbjct: 70 TLL-PGLQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGI 128
Query: 145 ILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQ 204
I+AKLSVIP+RRGYWG +G+PH++ K TGKCGSVTVR++PAPRGSGIVA+ KK+LQ
Sbjct: 129 IIAKLSVIPIRRGYWGTNLGQPHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQ 188
Query: 205 FAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSKSPFQEYTD 260
AG++DV+T S G T+TL N +KA F + TYGFLTP W E SP Y+D
Sbjct: 189 LAGVEDVYTQSNGKTRTLENTLKAAFVAIGNTYGFLTPNLWAEQPLPVSPLDIYSD 244
>RS5_AERPE (Q9YF95) 30S ribosomal protein S5P
Length = 218
Score = 188 bits (478), Expect = 1e-47
Identities = 106/216 (49%), Positives = 146/216 (67%), Gaps = 5/216 (2%)
Query: 36 RRRAGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEV 95
+R AG + + E W P T++GRLVKEGKI+S+++I+ +LPI E +I+D L+ P L EV
Sbjct: 3 QREAG--QVDLEAWQPRTRVGRLVKEGKIKSIDEIFRRNLPILETEIVDYLL-PGLDHEV 59
Query: 96 MKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR 155
+ + VQK T AG+ TRF+A VVVG+ +G+VGLG +++ AI AI AKL++IPVR
Sbjct: 60 IDVSIVQKMTDAGRITRFRAVVVVGNKDGYVGLGKGKARQFRFAIEKAIRNAKLNIIPVR 119
Query: 156 RGY--WGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFT 213
RG W G+ H+VP V GK GSV V + PAP+G+G+VA V K VL+ AGI DV+T
Sbjct: 120 RGCGSWECTCGEAHSVPFTVRGKSGSVEVILKPAPKGTGLVAGDVAKVVLRLAGISDVWT 179
Query: 214 SSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETR 249
++G T+T NF +AT+ L TY F+TP W E R
Sbjct: 180 FTKGETRTSYNFARATYLALRNTYRFVTPADWAEAR 215
>RS5_SULSO (Q9UX87) 30S ribosomal protein S5P
Length = 214
Score = 181 bits (460), Expect = 1e-45
Identities = 93/205 (45%), Positives = 141/205 (68%), Gaps = 3/205 (1%)
Query: 47 EKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTR 106
E+W P T +G LVKEGKI S+++++ +LPI E +I+D L+ P LK EV+ I VQKQT
Sbjct: 11 EEWKPRTSIGSLVKEGKISSIKELFDRNLPITEPEIVDVLL-PKLKYEVVDIKVVQKQTD 69
Query: 107 AGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIG 164
AG+ +R+K V++G+ +G+V +G +K++ AI+ AI AK+++IPVRRG W G
Sbjct: 70 AGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIIPVRRGCGSWQCTCG 129
Query: 165 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 224
+PH++P KV GK GSV V ++PAP+G+G+V V K +L +AGI D +++++G T+T N
Sbjct: 130 EPHSLPFKVVGKAGSVEVDLLPAPKGTGLVVGSVLKTLLTYAGIKDAWSTTKGETRTTEN 189
Query: 225 FVKATFDCLMKTYGFLTPEFWKETR 249
FV+A + L TY F+T + W R
Sbjct: 190 FVRAGYSALYNTYKFVTLQDWVRKR 214
>RS5_METKA (Q8TZA6) 30S ribosomal protein S5P
Length = 226
Score = 179 bits (455), Expect = 5e-45
Identities = 92/194 (47%), Positives = 136/194 (69%), Gaps = 8/194 (4%)
Query: 47 EKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTR 106
E+W P TKLGR+VKEG+I+++++++ I E +I+D L+ P L++EV+ + VQK +
Sbjct: 8 EEWEPKTKLGRMVKEGEIKTIDEVFAQGWKILEPEIVDWLL-PDLEEEVLDVNMVQKMHK 66
Query: 107 AGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIG 164
+G+R RF+ VVVG+ +G VG+G ++EV AIR AI AKL++I VRRG W G
Sbjct: 67 SGRRVRFRVTVVVGNKDGFVGVGQGKAREVGPAIRAAIDRAKLNIIKVRRGCGSWECGCG 126
Query: 165 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS-----RGST 219
+PH++P ++TGKCGSV + + PAPRG+G+VA +KVL+ AGI+DV+T + +G T
Sbjct: 127 RPHSIPFEITGKCGSVRITLKPAPRGTGLVAGETAQKVLEMAGIEDVWTKTTGGKGKGET 186
Query: 220 KTLGNFVKATFDCL 233
+T NF KATFD L
Sbjct: 187 RTTINFAKATFDAL 200
>RS5_SULTO (Q975K0) 30S ribosomal protein S5P
Length = 214
Score = 179 bits (453), Expect = 9e-45
Identities = 94/201 (46%), Positives = 138/201 (67%), Gaps = 3/201 (1%)
Query: 47 EKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTR 106
E+W P TK+G+LVKEGKI S+++I+ + PI E +I+D L+ P LK EVM I VQKQT
Sbjct: 11 EEWKPRTKVGQLVKEGKITSMKEIFEKNYPITEPEIVDVLL-PKLKYEVMDIKIVQKQTD 69
Query: 107 AGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIG 164
AG+ +++K +V+G+ +G+V G +K++ AI+ AI AK+++IPVRRG W G
Sbjct: 70 AGEISKYKVLIVMGNMDGYVSYGTGKAKQLRVAIQKAIKNAKMNIIPVRRGCGSWECTCG 129
Query: 165 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 224
+ H++P KV GK GSV V ++PAP+G+G+V K +L +AGI D ++ +RGST T N
Sbjct: 130 EAHSLPFKVYGKAGSVEVLLMPAPKGTGLVVGPALKTLLTYAGIKDAWSLTRGSTYTTEN 189
Query: 225 FVKATFDCLMKTYGFLTPEFW 245
F+KA ++ L TY F+TP W
Sbjct: 190 FIKAGYNALYNTYKFVTPVDW 210
>RS5_METMA (Q8PV30) 30S ribosomal protein S5P
Length = 209
Score = 179 bits (453), Expect = 9e-45
Identities = 95/190 (50%), Positives = 131/190 (68%), Gaps = 3/190 (1%)
Query: 46 EEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQT 105
++ WVP T+LG+LV EG++ S+++ LPI+E QIID L+ P L+DEV+ I VQ+ T
Sbjct: 4 DQDWVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLL-PDLEDEVLDINMVQRMT 62
Query: 106 RAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKI 163
+G+R +F+A V+VG+ NG+VGLG +V AIR AI AKL++ +RRG W
Sbjct: 63 DSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRGCGSWECAC 122
Query: 164 GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG 223
G PHTVP +VTGK GSV+V ++PAPRG GI A KVL+ AGI DV+T + G+T++
Sbjct: 123 GLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTL 182
Query: 224 NFVKATFDCL 233
NF KAT+D L
Sbjct: 183 NFAKATYDAL 192
>RS5_METAC (Q8TRS7) 30S ribosomal protein S5P
Length = 209
Score = 179 bits (453), Expect = 9e-45
Identities = 95/190 (50%), Positives = 131/190 (68%), Gaps = 3/190 (1%)
Query: 46 EEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQT 105
++ WVP T+LG+LV EG++ S+++ LPI+E QIID L+ P L+DEV+ I VQ+ T
Sbjct: 4 DQDWVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLL-PDLEDEVLDINMVQRMT 62
Query: 106 RAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKI 163
+G+R +F+A V+VG+ NG+VGLG +V AIR AI AKL++ +RRG W
Sbjct: 63 DSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRGCGSWECAC 122
Query: 164 GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG 223
G PHTVP +VTGK GSV+V ++PAPRG GI A KVL+ AGI DV+T + G+T++
Sbjct: 123 GLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTL 182
Query: 224 NFVKATFDCL 233
NF KAT+D L
Sbjct: 183 NFAKATYDAL 192
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.140 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,146,746
Number of Sequences: 164201
Number of extensions: 1644334
Number of successful extensions: 24526
Number of sequences better than 10.0: 595
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 145
Number of HSP's that attempted gapping in prelim test: 10777
Number of HSP's gapped (non-prelim): 6827
length of query: 279
length of database: 59,974,054
effective HSP length: 109
effective length of query: 170
effective length of database: 42,076,145
effective search space: 7152944650
effective search space used: 7152944650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC140104.12