BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137509.6 - phase: 0 /pseudo
         (85 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei...    42  2e-04
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei...    42  2e-04
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei...    42  2e-04
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran...    31  0.49
SYLC_NEUCR (P10857) Leucyl-tRNA synthetase, cytoplasmic (EC 6.1....    27  7.1

>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
            type 3
          Length = 1333

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 1    MKASQSRQKSYHDKRRKDIE-YQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEK 59
            +  +  + K Y D + ++IE +Q GD V ++    T  G   K  K  P F GPF V++K
Sbjct: 1171 LNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK---RTKTGFLHKSNKLAPSFAGPFYVLQK 1227

Query: 60   VGVVAYRIALPPSLSNL 76
             G   Y + LP S+ ++
Sbjct: 1228 SGPNNYELDLPDSIKHM 1244


>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
            type 2
          Length = 1333

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 1    MKASQSRQKSYHDKRRKDIE-YQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEK 59
            +  +  + K Y D + ++IE +Q GD V ++    T  G   K  K  P F GPF V++K
Sbjct: 1171 LNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK---RTKTGFLHKSNKLAPSFAGPFYVLQK 1227

Query: 60   VGVVAYRIALPPSLSNL 76
             G   Y + LP S+ ++
Sbjct: 1228 SGPNNYELDLPDSIKHM 1244


>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
            type 1
          Length = 1333

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 1    MKASQSRQKSYHDKRRKDIE-YQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEK 59
            +  +  + K Y D + ++IE +Q GD V ++    T  G   K  K  P F GPF V++K
Sbjct: 1171 LNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK---RTKTGFLHKSNKLAPSFAGPFYVLQK 1227

Query: 60   VGVVAYRIALPPSLSNL 76
             G   Y + LP S+ ++
Sbjct: 1228 SGPNNYELDLPDSIKHM 1244


>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
            transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
            transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1237

 Score = 31.2 bits (69), Expect = 0.49
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 10/61 (16%)

Query: 1    MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
            ++A + + K  +D + KDIE +VGD V LR      VG  L  +     + GP+  IE +
Sbjct: 1160 LEAHKEKNKENYDLKVKDIELEVGDKVLLR----NEVGHKLDFK-----YTGPYK-IESI 1209

Query: 61   G 61
            G
Sbjct: 1210 G 1210


>SYLC_NEUCR (P10857) Leucyl-tRNA synthetase, cytoplasmic (EC
           6.1.1.4) (Leucine--tRNA ligase) (LeuRS)
          Length = 1123

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 18/44 (40%), Positives = 25/44 (55%), Gaps = 1/44 (2%)

Query: 42  KCRKSTPCFVGPFDVIEKVGVVAYRIALPPSLSNLHDV-FVEEV 84
           K  KST  F+   DV++K G  A R+AL  +   + D  FVE+V
Sbjct: 757 KMSKSTGNFMTLDDVVKKYGADAARVALADAGDGISDSNFVEDV 800


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.324    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,721,784
Number of Sequences: 164201
Number of extensions: 327639
Number of successful extensions: 558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 5
length of query: 85
length of database: 59,974,054
effective HSP length: 61
effective length of query: 24
effective length of database: 49,957,793
effective search space: 1198987032
effective search space used: 1198987032
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)