BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136138.6 - phase: 0 /pseudo
         (339 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC2A_CAEBR (Q04202) Transposable element TCB2 transposase              35  0.27
TC1A_CAEBR (P35072) Transposable element TCB1 transposase (Trans...    32  2.3
R103_RAT (Q9EPZ8) RING finger protein 103 (Zinc finger protein 1...    30  6.6
R103_MOUSE (Q9R1W3) RING finger protein 103 (Zinc finger protein...    30  6.6
BPH1_YEAST (P25356) Beige protein homolog 1                            30  6.6
YCF1_LOTJA (Q9BBN6) Hypothetical 214.8 kDa protein ycf1                30  8.7

>TC2A_CAEBR (Q04202) Transposable element TCB2 transposase
          Length = 273

 Score = 35.0 bits (79), Expect = 0.27
 Identities = 20/68 (29%), Positives = 30/68 (43%), Gaps = 5/68 (7%)

Query: 173 FLIEKVLPATKEVWLRDELGSTIFIQQDNARTHINPNDPEFIQAATQDGFDIRLMCQPPN 232
           F+ E +L  T   W R  +G     QQDN   H + +  E+ +    D     L+  P  
Sbjct: 150 FVYEDILENTMRPWARSTVGRAFVFQQDNDPKHTSKHIKEWFRRRHVD-----LLDWPSQ 204

Query: 233 SPDFNVLD 240
           SPD N ++
Sbjct: 205 SPDLNPIE 212


>TC1A_CAEBR (P35072) Transposable element TCB1 transposase
           (Transposable element barney transposase)
          Length = 273

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 18/91 (19%)

Query: 150 VNRVAGTMETKAITSINRDLIRSFLIEKVLPATKEVWLRDELGSTIFIQQDNARTHINPN 209
           + R+ GTM+              ++ E +L  T   W R  LG +   QQDN   H + +
Sbjct: 140 LKRIVGTMDR-------------YVYEDILENTMRPWARANLGRSWVFQQDNDPKHTSGH 186

Query: 210 DPEFIQAATQDGFDIRLMCQPPNSPDFNVLD 240
              + +        + L+  P  SPD N ++
Sbjct: 187 VANWFRRRR-----VNLLEWPSQSPDLNPIE 212


>R103_RAT (Q9EPZ8) RING finger protein 103 (Zinc finger protein 103)
           (Zfp-103) (ADRG34 protein)
          Length = 682

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 14/77 (18%)

Query: 67  KSMYNIIHIDEKWFYMTKKSERY----YLLPDEDKPHR--SCKSKNFVPKVMFLTVVARP 120
           K++YN+ H+ E+W     KS++Y    YL  + D+P    S  S  F  +V F+ V    
Sbjct: 215 KTIYNVEHLKEEW----NKSDQYWVKIYLFANLDQPPAFFSALSIKFTGRVEFIFV---- 266

Query: 121 RFDSEKNVTFSGKIGIF 137
             ++  N ++   IGI+
Sbjct: 267 NVENWNNKSYMTDIGIY 283


>R103_MOUSE (Q9R1W3) RING finger protein 103 (Zinc finger protein
           103) (Zfp-103) (KF-1) (mKF-1)
          Length = 683

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 14/77 (18%)

Query: 67  KSMYNIIHIDEKWFYMTKKSERY----YLLPDEDKPHR--SCKSKNFVPKVMFLTVVARP 120
           K++YN+ H+ E+W     KS++Y    YL  + D+P    S  S  F  +V F+ V    
Sbjct: 215 KTIYNVEHLKEEW----NKSDQYWVKIYLFANLDQPPAFFSALSIKFTGRVEFIFV---- 266

Query: 121 RFDSEKNVTFSGKIGIF 137
             ++  N ++   IGI+
Sbjct: 267 NVENWNNKSYMTDIGIY 283


>BPH1_YEAST (P25356) Beige protein homolog 1
          Length = 2167

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 37/159 (23%), Positives = 67/159 (41%), Gaps = 11/159 (6%)

Query: 168  DLIRSFLIEKVLPATKEVWLRDELGSTIFIQQDNARTHINPNDPEFIQAATQDGFDIRLM 227
            D+I   L+ ++    ++V +    GS + + ++NA +  N N     Q  T   F+   +
Sbjct: 2006 DMINFELVRQITNDAQKVAISQHAGSIMVLTKNNAISIFNLNG----QIYTSKKFEPAKI 2061

Query: 228  CQPPNSPDFNVLDLGFFSAIQSLHYKEAPKTIDELVNAVVKSFENYCVVKSNF-IFLSLQ 286
                +  DF  LD G+    + +++KE    +    +  ++ +E +    + + I L  Q
Sbjct: 2062 VSSIDFFDFTKLDAGY---RKHIYWKEMEILLVGFEDGTIEIYELFLNFHNEWAIKLLKQ 2118

Query: 287  LCMIHDRDNESQRFQ*ISISTYAEGKIRKRRTTAHSIEV 325
            LC    +   S + Q     TY   K RK     H IEV
Sbjct: 2119 LCTEKGKAITSIKGQ---GKTYLSQKRRKDTAEPHEIEV 2154


>YCF1_LOTJA (Q9BBN6) Hypothetical 214.8 kDa protein ycf1
          Length = 1793

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 29/97 (29%), Positives = 42/97 (42%), Gaps = 8/97 (8%)

Query: 87  ERYYLLPDEDKPHRSCKSKNFVPKVMFLTVVARPRFDSEKNVTFSGKIGIFPFVTQEPAK 146
           E  YL P ++K   S K K F    +F T+  RP  +  K V     IGI   V + P  
Sbjct: 535 EGLYLFPKDNKGKMSSKKKKF----LFDTI--RPDLNDNKIVNLQKCIGINEIVKKLP-- 586

Query: 147 RTSVNRVAGTMETKAITSINRDLIRSFLIEKVLPATK 183
           R S N +    + +    +    IRS   ++V+  TK
Sbjct: 587 RWSYNLIDELEQLEGKKKVEYHQIRSRKAKRVVLLTK 623


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.327    0.140    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,862,181
Number of Sequences: 164201
Number of extensions: 1492453
Number of successful extensions: 3927
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3926
Number of HSP's gapped (non-prelim): 7
length of query: 339
length of database: 59,974,054
effective HSP length: 111
effective length of query: 228
effective length of database: 41,747,743
effective search space: 9518485404
effective search space used: 9518485404
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 66 (30.0 bits)