BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134242.10 + phase: 0
(164 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A 256 2e-68
GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A 255 4e-68
GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7 248 6e-66
GRP_DAUCA (Q03878) Glycine-rich RNA-binding protein 238 5e-63
GR10_BRANA (Q05966) Glycine-rich RNA-binding protein 10 234 9e-62
GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2 229 2e-60
GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu... 229 3e-60
GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro... 224 9e-59
GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment) 188 5e-48
GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon... 152 4e-37
CIRP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-... 127 1e-29
CIRP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-ri... 124 1e-28
CIRP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-... 124 1e-28
CIRP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-... 124 1e-28
CIRP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-... 120 2e-27
ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn... 115 3e-26
ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (... 115 3e-26
RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA binding ... 115 3e-26
NUCL_MESAU (P08199) Nucleolin (Protein C23) 115 6e-26
RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 h... 113 2e-25
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A
Length = 166
Score = 256 bits (654), Expect = 2e-68
Identities = 132/174 (75%), Positives = 138/174 (78%), Gaps = 20/174 (11%)
Query: 1 MASADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEK 60
MAS DVEYRCFVGGLAWATD ALE AFSQYGE++DSKIINDRETGRSRGFGFVTF DEK
Sbjct: 1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 61 SMRDAIEGMNGQDMDGRNITVNEAQSRGSGGGGG----------RGGGGYGGGGGGYGGG 110
SM+DAIEGMNGQD+DGR+ITVNEAQSRGSGGGGG GGGGYGGGGGGYGGG
Sbjct: 61 SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGGRGGGGGYRSGGGGGYGGGGGGYGGG 120
Query: 111 GRREGGYNRSSGGGGGYG--GGGGGGYGGGRDRGYGDDGGSRYSRGGGGDGGSW 162
G REGGY SGGGGGY GGGGGGYGGG R G+ GG GG G GG W
Sbjct: 121 G-REGGY---SGGGGGYSSRGGGGGGYGGGGRRDGGEGGG----YGGSGGGGGW 166
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A
Length = 169
Score = 255 bits (651), Expect = 4e-68
Identities = 128/172 (74%), Positives = 135/172 (78%), Gaps = 13/172 (7%)
Query: 1 MASADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEK 60
MAS DVEYRCFVGGLAWATD +LE AFSQ+GE++DSKIINDRETGRSRGFGFVTF DEK
Sbjct: 1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 61 SMRDAIEGMNGQDMDGRNITVNEAQSRGSGGGGG--------RGGGGYGGGGGGYGGGGR 112
SM+DAIEGMNGQD+DGR+ITVNEAQSRGSG GGG RGGGGYGGGGGGYGGG R
Sbjct: 61 SMKDAIEGMNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGGGGGGYGGGRR 120
Query: 113 REGGYNRSSGGGGGYG--GGGGGGYGGGRDRGYGDDGGSRYSRGGGGDGGSW 162
GGY SGGGGGY GGGGGGYGGG R G GG GGG GG W
Sbjct: 121 EGGGY---SGGGGGYSSRGGGGGGYGGGGRRDGGGYGGGEGGGYGGGGGGGW 169
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7
Length = 176
Score = 248 bits (632), Expect = 6e-66
Identities = 125/176 (71%), Positives = 133/176 (75%), Gaps = 14/176 (7%)
Query: 1 MASADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEK 60
MAS DVEYRCFVGGLAWATD ALE AF+QYG++IDSKIINDRETGRSRGFGFVTF DEK
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 61 SMRDAIEGMNGQDMDGRNITVNEAQSRGSGGGGGR-----------GGGGYGGGGGGYGG 109
+M+DAIEGMNGQD+DGR+ITVNEAQSRGSGGGGG GGGGY GGGG YGG
Sbjct: 61 AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120
Query: 110 GGRREGGYNRSSGGGGGYG--GGGGGGYGGG-RDRGYGDDGGSRYSRGGGGDGGSW 162
GG R G SGGGGGY GGGGG YGGG R+ G G GG GG G GG W
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGYGGSGGGGGW 176
>GRP_DAUCA (Q03878) Glycine-rich RNA-binding protein
Length = 157
Score = 238 bits (607), Expect = 5e-63
Identities = 123/164 (75%), Positives = 132/164 (80%), Gaps = 13/164 (7%)
Query: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 63
A+VEYRCFVGGLAWAT+ E+LE+AFSQ+G+I DSKIINDRETGRSRGFGFVTF DEKSMR
Sbjct: 2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61
Query: 64 DAIEGMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGG-----YN 118
DAIEGMNGQ++DGRNITVNEAQSRGSGGGGGR GG GG GGG G GGRREGG
Sbjct: 62 DAIEGMNGQELDGRNITVNEAQSRGSGGGGGRREGGGGGYGGGGGYGGRREGGGGGGYGG 121
Query: 119 RSSGGGGGYGGGGGGGYGGGRDRGYGDDGGSRYSRGGGGDGGSW 162
R GGGGGY GGGGGGYGG R+ G DGG GGGG G W
Sbjct: 122 RREGGGGGY-GGGGGGYGGRRE---GGDGG----YGGGGGGSRW 157
>GR10_BRANA (Q05966) Glycine-rich RNA-binding protein 10
Length = 169
Score = 234 bits (596), Expect = 9e-62
Identities = 117/168 (69%), Positives = 127/168 (74%), Gaps = 9/168 (5%)
Query: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 63
++VEYRCFVGGLAWAT LE+ FSQ+GE+IDSKIINDRETGRSRGFGFVTF DEKSM+
Sbjct: 2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMK 61
Query: 64 DAIEGMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGG-GGGGYGGGG------RREGG 116
DAI+ MNG+++DGR ITVNEAQSRG GGGGGRGGGGYGG GGGGYGGGG R GG
Sbjct: 62 DAIDEMNGKELDGRTITVNEAQSRGGGGGGGRGGGGYGGRGGGGYGGGGGGYGDRRGGGG 121
Query: 117 YNRSSG--GGGGYGGGGGGGYGGGRDRGYGDDGGSRYSRGGGGDGGSW 162
Y G GGGGYG GGGG GGG R G GG GGG GG W
Sbjct: 122 YGSGGGGRGGGGYGSGGGGYGGGGGRRDGGGYGGGDGGYGGGSGGGGW 169
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2
Length = 168
Score = 229 bits (585), Expect = 2e-60
Identities = 115/171 (67%), Positives = 133/171 (77%), Gaps = 10/171 (5%)
Query: 1 MASADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEK 60
MA+ADVEYRCFVGGLAWAT++E LE+AF+ +G++IDSK+I DRETGRSRGFGFVTF+ E+
Sbjct: 1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60
Query: 61 SMRDAIEGMNGQDMDGRNITVNEAQSRGSGGGG---GRGGGGYGG-GGGGYGGGGRREGG 116
SM DAIE MNG+++DGRNITVN+AQSRG GGGG G GGGGYGG GGGYGGGG GG
Sbjct: 61 SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGGGYGGGGGGYGGREGGGYGGGG---GG 117
Query: 117 YNRSSGGGGGYGG---GGGGGYGGGRDRGYGDDGGSRYSRGGGGDGGSWRS 164
Y GGGGYGG GGGGG GGR+ G G GG Y G GG+WR+
Sbjct: 118 YGGRREGGGGYGGGGYGGGGGGYGGREGGGGYGGGGGYGGNRGDSGGNWRN 168
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic
acid-inducible protein
Length = 157
Score = 229 bits (583), Expect = 3e-60
Identities = 118/168 (70%), Positives = 130/168 (77%), Gaps = 17/168 (10%)
Query: 1 MASADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEK 60
MA+ADVEYRCFVGGLAWAT +E+LE AF+ YGEI+DSK+I DRETGRSRGFGFVTF+ E
Sbjct: 1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSEN 60
Query: 61 SMRDAIEGMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRS 120
SM DAIE MNG+++DGRNITVN+AQSRG GGGGG GGG GGGG GGGRR+GGY
Sbjct: 61 SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGGGYGGGRGGGG---YGGGRRDGGY--- 114
Query: 121 SGGGGGYGG---GGGGGYGGGRDRGYGDDGGSRYSRGG--GGDGGSWR 163
GGGGGYGG GGGGGYGGG G GG R GG GG GG WR
Sbjct: 115 -GGGGGYGGRREGGGGGYGGG-----GGYGGRREGGGGGYGGGGGGWR 156
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1
protein)
Length = 169
Score = 224 bits (570), Expect = 9e-59
Identities = 115/169 (68%), Positives = 128/169 (75%), Gaps = 17/169 (10%)
Query: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 63
++VEYRCFVGGLAWAT+ E L++ FSQ+G++IDSKIINDRE+GRSRGFGFVTF DEK+MR
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 64 DAIEGMNGQDMDGRNITVNEAQSRGSGGGGGR-----------GGGGY-GGGGGGYGGGG 111
DAIE MNG+++DGR ITVNEAQSRGSGGGGG GGGGY GGGGGGY GGG
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGG 121
Query: 112 RREGGYNRSSGGGGGYGGGGGGGYGGGRDR---GYGDDGGSRYSRGGGG 157
GGY R SGG G GGGGG GYGGG R GYG G Y GGGG
Sbjct: 122 G--GGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGGGGGG 168
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)
Length = 142
Score = 188 bits (477), Expect = 5e-48
Identities = 97/146 (66%), Positives = 110/146 (74%), Gaps = 9/146 (6%)
Query: 23 ALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMNGQDMDGRNITVN 82
+L AFS YGE+++SKII DRET RSRGFGFVTF+ E++MR AIEGMNG+++DGRNITVN
Sbjct: 2 SLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVN 61
Query: 83 EAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGG----GGGGYGGG 138
EAQSRG GGG GGGGYGGG GG GG GRR+GG GGGGGYGGG GGGGYGGG
Sbjct: 62 EAQSRGGRGGG--GGGGYGGGRGGGGGYGRRDGGGGGYGGGGGGYGGGRGGYGGGGYGGG 119
Query: 139 RDRGYGDDGGSRYSRGGGGDGGSWRS 164
G G GGSR G G G+WR+
Sbjct: 120 ---GGGYGGGSRGGGGYGNSDGNWRN 142
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2)
Length = 158
Score = 152 bits (383), Expect = 4e-37
Identities = 73/128 (57%), Positives = 91/128 (71%), Gaps = 6/128 (4%)
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
+ F+GGL+W TD +L AF+ +G+++D+K+I DRETGRSRGFGFV F DE + AI
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 69 MNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYG 128
M+G++++GR+I VN A R S GGGGY GGGGGYGGGG GGY GGGGGYG
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAPRAYGGGGGYSGGGGGYGGGG---GGY---GGGGGGYG 149
Query: 129 GGGGGGYG 136
GGG GG G
Sbjct: 150 GGGDGGGG 157
>CIRP_XENLA (O93235) Cold-inducible RNA-binding protein
(Glycine-rich RNA-binding protein CIRP) (XCIRP)
Length = 163
Score = 127 bits (318), Expect = 1e-29
Identities = 70/153 (45%), Positives = 92/153 (59%), Gaps = 9/153 (5%)
Query: 7 EYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAI 66
E + F+GGL + T+ + LE+AF++YG I + ++ DRET RSRGFGFVTF + +DA+
Sbjct: 4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAM 63
Query: 67 EGMNGQDMDGRNITVNEA-----QSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSS 121
MNG+ +DGR I V++A + RG GG GG G+ GG G GGG R G +R
Sbjct: 64 MAMNGKSVDGRQIRVDQAGKSSGERRGGYRGGSSGGRGFFRGGRGRGGGDRGYGS-SRFD 122
Query: 122 GGGGGYGGGGGGG--YGGGRDRG-YGDDGGSRY 151
GGYGG G YG GR +G YGD G Y
Sbjct: 123 NRSGGYGGSSGSRDYYGSGRSQGSYGDRSGGSY 155
>CIRP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) (A18 hnRNP)
Length = 172
Score = 124 bits (311), Expect = 1e-28
Identities = 75/165 (45%), Positives = 99/165 (59%), Gaps = 10/165 (6%)
Query: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 63
A E + FVGGL++ T+ +ALE+ FS+YG+I + ++ DRET RSRGFGFVTF + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 64 DAIEGMNGQDMDGRNITVNEA-QSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSG 122
DA+ MNG+ +DGR I V++A +S + G RGG GG G + GG R G++R G
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGS--AGGRGFFRGGRSRGRGFSR-GG 118
Query: 123 GGGGYGGG----GGGGYGGGRDRGYGDDGGSRYSRGGGGDGGSWR 163
G GYGGG GGYGG RD G Y G GGS+R
Sbjct: 119 GDRGYGGGRFESRSGGYGGSRDYYASRSQGGSY--GYRSSGGSYR 161
>CIRP_MOUSE (P60824) Cold-inducible RNA-binding protein
(Glycine-rich RNA-binding protein CIRP) (A18 hnRNP)
Length = 172
Score = 124 bits (311), Expect = 1e-28
Identities = 75/165 (45%), Positives = 99/165 (59%), Gaps = 10/165 (6%)
Query: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 63
A E + FVGGL++ T+ +ALE+ FS+YG+I + ++ DRET RSRGFGFVTF + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 64 DAIEGMNGQDMDGRNITVNEA-QSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSG 122
DA+ MNG+ +DGR I V++A +S + G RGG GG G + GG R G++R G
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGS--AGGRGFFRGGRSRGRGFSR-GG 118
Query: 123 GGGGYGGG----GGGGYGGGRDRGYGDDGGSRYSRGGGGDGGSWR 163
G GYGGG GGYGG RD G Y G GGS+R
Sbjct: 119 GDRGYGGGRFESRSGGYGGSRDYYASRSQGGSY--GYRSSGGSYR 161
>CIRP_CRIGR (P60826) Cold-inducible RNA-binding protein
(Glycine-rich RNA-binding protein CIRP) (A18 hnRNP)
Length = 172
Score = 124 bits (311), Expect = 1e-28
Identities = 75/165 (45%), Positives = 99/165 (59%), Gaps = 10/165 (6%)
Query: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 63
A E + FVGGL++ T+ +ALE+ FS+YG+I + ++ DRET RSRGFGFVTF + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 64 DAIEGMNGQDMDGRNITVNEA-QSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSG 122
DA+ MNG+ +DGR I V++A +S + G RGG GG G + GG R G++R G
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGS--AGGRGFFRGGRSRGRGFSR-GG 118
Query: 123 GGGGYGGG----GGGGYGGGRDRGYGDDGGSRYSRGGGGDGGSWR 163
G GYGGG GGYGG RD G Y G GGS+R
Sbjct: 119 GDRGYGGGRFESRSGGYGGSRDYYASRSQGGSY--GYRSSGGSYR 161
>CIRP_HUMAN (Q14011) Cold-inducible RNA-binding protein
(Glycine-rich RNA-binding protein CIRP) (A18 hnRNP)
Length = 172
Score = 120 bits (300), Expect = 2e-27
Identities = 74/167 (44%), Positives = 96/167 (57%), Gaps = 14/167 (8%)
Query: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 63
A E + FVGGL++ T+ ++LE+ FS+YG+I + ++ DRET RSRGFGFVTF + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 64 DAIEGMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGG 123
DA+ MNG+ +DGR I V++A G GG GG G GG GR G++R GG
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGR-GFSR-GGG 119
Query: 124 GGGYGG----GGGGGYGGGRDRGYGDDGGSRYSRGGGGD---GGSWR 163
GYGG GGYGG RD SR GG D GGS+R
Sbjct: 120 DRGYGGNRFESRSGGYGGSRDY-----YSSRSQSGGYSDRSSGGSYR 161
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP
A3)
Length = 379
Score = 115 bits (289), Expect = 3e-26
Identities = 80/191 (41%), Positives = 98/191 (50%), Gaps = 45/191 (23%)
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
+ FVGG+ T+ L F +YG+I +++ DR++G+ RGF FVTF D ++ D I
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVV 185
Query: 69 MNGQDMDGRNITVNEA------QSRGS-------------------GGGG--GRGG---- 97
++G N V +A QS GS GGGG GRGG
Sbjct: 186 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGG 245
Query: 98 -GGYGGGGGG----YGGGGRREGGYNRSSGGGGGYGGGGG----GGYGGGRDRGYGDDGG 148
GGYGGGGGG YGGG +GGYN G GG YGGG G GGYGGG GYG+ GG
Sbjct: 246 RGGYGGGGGGSRGSYGGG---DGGYNGFGGDGGNYGGGPGYSSRGGYGGG-GPGYGNQGG 301
Query: 149 SRYSRGGGGDG 159
GGG DG
Sbjct: 302 GYGGGGGGYDG 312
Score = 63.9 bits (154), Expect = 2e-10
Identities = 45/108 (41%), Positives = 46/108 (41%), Gaps = 16/108 (14%)
Query: 68 GMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSG-GGGG 126
G NG DG N S G GGG G G GGG G GGGG GYN GGG
Sbjct: 266 GYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGG--YDGYNEGGNFGGGN 323
Query: 127 YGGGGG----GGYGGGRDRGYGD---------DGGSRYSRGGGGDGGS 161
YGGGG G Y G + YG GS Y G G GGS
Sbjct: 324 YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGS 371
Score = 54.7 bits (130), Expect = 9e-08
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
+ F+GGL++ T ++L + F ++G + D ++ D +T RSRGFGFVT++ + + DA
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV-DAAMC 94
Query: 69 MNGQDMDGRNITVNEAQSR 87
+DGR + A SR
Sbjct: 95 ARPHKVDGRVVEPKRAVSR 113
Score = 53.5 bits (127), Expect = 2e-07
Identities = 34/81 (41%), Positives = 37/81 (44%), Gaps = 12/81 (14%)
Query: 86 SRGSGGGGGRGGGGYGG-------GGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGG 138
++G G GG GGGGY G GGG YGGGG N S YG GG +GG
Sbjct: 298 NQGGGYGG--GGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG- 354
Query: 139 RDRGYGDDGGSRYSRGGGGDG 159
R G G Y GGG G
Sbjct: 355 --RSSGSPYGGGYGSGGGSGG 373
Score = 39.7 bits (91), Expect = 0.003
Identities = 34/81 (41%), Positives = 36/81 (43%), Gaps = 23/81 (28%)
Query: 82 NEAQSRGSGGGG-----------GR--GGGGYGGGGGGYGGG-----GRREGGY--NRSS 121
N+ G GGGG G GGGG G Y G G +GG RSS
Sbjct: 298 NQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSS 357
Query: 122 GG--GGGYG-GGGGGGYGGGR 139
G GGGYG GGG GGYG R
Sbjct: 358 GSPYGGGYGSGGGSGGYGSRR 378
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3
(hnRNP A3)
Length = 379
Score = 115 bits (289), Expect = 3e-26
Identities = 80/191 (41%), Positives = 98/191 (50%), Gaps = 45/191 (23%)
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
+ FVGG+ T+ L F +YG+I +++ DR++G+ RGF FVTF D ++ D I
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-DKIVV 185
Query: 69 MNGQDMDGRNITVNEA------QSRGS-------------------GGGG--GRGG---- 97
++G N V +A QS GS GGGG GRGG
Sbjct: 186 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGG 245
Query: 98 -GGYGGGGGG----YGGGGRREGGYNRSSGGGGGYGGGGG----GGYGGGRDRGYGDDGG 148
GGYGGGGGG YGGG +GGYN G GG YGGG G GGYGGG GYG+ GG
Sbjct: 246 RGGYGGGGGGSRGSYGGG---DGGYNGFGGDGGNYGGGPGYSSRGGYGGG-GPGYGNQGG 301
Query: 149 SRYSRGGGGDG 159
GGG DG
Sbjct: 302 GYGGGGGGYDG 312
Score = 63.9 bits (154), Expect = 2e-10
Identities = 45/108 (41%), Positives = 46/108 (41%), Gaps = 16/108 (14%)
Query: 68 GMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSG-GGGG 126
G NG DG N S G GGG G G GGG G GGGG GYN GGG
Sbjct: 266 GYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGG--YDGYNEGGNFGGGN 323
Query: 127 YGGGGG----GGYGGGRDRGYGD---------DGGSRYSRGGGGDGGS 161
YGGGG G Y G + YG GS Y G G GGS
Sbjct: 324 YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGS 371
Score = 54.7 bits (130), Expect = 9e-08
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
+ F+GGL++ T ++L + F ++G + D ++ D +T RSRGFGFVT++ + + DA
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV-DAAMC 94
Query: 69 MNGQDMDGRNITVNEAQSR 87
+DGR + A SR
Sbjct: 95 ARPHKVDGRVVEPKRAVSR 113
Score = 53.5 bits (127), Expect = 2e-07
Identities = 34/81 (41%), Positives = 37/81 (44%), Gaps = 12/81 (14%)
Query: 86 SRGSGGGGGRGGGGYGG-------GGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGG 138
++G G GG GGGGY G GGG YGGGG N S YG GG +GG
Sbjct: 298 NQGGGYGG--GGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG- 354
Query: 139 RDRGYGDDGGSRYSRGGGGDG 159
R G G Y GGG G
Sbjct: 355 --RSSGSPYGGGYGSGGGSGG 373
Score = 39.7 bits (91), Expect = 0.003
Identities = 34/81 (41%), Positives = 36/81 (43%), Gaps = 23/81 (28%)
Query: 82 NEAQSRGSGGGG-----------GR--GGGGYGGGGGGYGGG-----GRREGGY--NRSS 121
N+ G GGGG G GGGG G Y G G +GG RSS
Sbjct: 298 NQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSS 357
Query: 122 GG--GGGYG-GGGGGGYGGGR 139
G GGGYG GGG GGYG R
Sbjct: 358 GSPYGGGYGSGGGSGGYGSRR 378
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA binding
motif protein 3)
Length = 153
Score = 115 bits (289), Expect = 3e-26
Identities = 71/159 (44%), Positives = 88/159 (54%), Gaps = 24/159 (15%)
Query: 7 EYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAI 66
E + FVGGL + TD +ALE FS +G I + ++ DRET RSRGFGF+TF + + DA+
Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAM 64
Query: 67 EGMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGG 126
MNG+ +DGR I V+ A G G GG +GG GR Y+R GG G
Sbjct: 65 RAMNGESLDGRQIRVDHA-----------GKSARGSRGGAFGGRGR---SYSR-GGGDQG 109
Query: 127 YGGG------GGGGYGGGRDRGY-GDDGGSRYSRGGGGD 158
YG G GG GYG GR R Y G GG Y R GG+
Sbjct: 110 YGSGRYDSRPGGYGYGYGRSRDYSGSQGG--YDRYSGGN 146
>NUCL_MESAU (P08199) Nucleolin (Protein C23)
Length = 713
Score = 115 bits (287), Expect = 6e-26
Identities = 66/155 (42%), Positives = 89/155 (56%), Gaps = 26/155 (16%)
Query: 11 FVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMN 70
FV GL+ T E L+++F + ++I+ DRETG S+GFGFV F E+ + A E M
Sbjct: 574 FVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 630
Query: 71 GQDMDGRNITVNEAQSRGSGGGGGRGG--GGYGGGGGGYGGGGRREGGYNRSSGGGGGYG 128
++DG +T++ A+ +G GG GGRGG GG+GG GGG G GG GG+G
Sbjct: 631 DGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRG-------------GGRGGFG 677
Query: 129 GGGGGGYGGGRDRGYGDDGGSRYSRGGGGDGGSWR 163
G G GG+GG GG R RGGGG GG ++
Sbjct: 678 GRGRGGFGG--------RGGFRGGRGGGGGGGDFK 704
Score = 30.8 bits (68), Expect = 1.4
Identities = 11/45 (24%), Positives = 24/45 (52%)
Query: 44 ETGRSRGFGFVTFADEKSMRDAIEGMNGQDMDGRNITVNEAQSRG 88
+ G+S+G ++ F E +E G ++DGR++++ +G
Sbjct: 424 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 468
Score = 30.4 bits (67), Expect = 1.9
Identities = 22/82 (26%), Positives = 39/82 (46%), Gaps = 2/82 (2%)
Query: 8 YRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIE 67
+ F+G L L+ A S+ D +++ R TG +R FG+V F + + A+E
Sbjct: 307 FNLFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVR-TGTNRKFGYVDFESAEDLEKALE 365
Query: 68 GMNGQDMDGRNITVNEAQSRGS 89
+ G + G I + + + R S
Sbjct: 366 -LTGLKVFGNEIKLEKPKGRDS 386
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2
homolog 1 (hnRNP A2(A))
Length = 346
Score = 113 bits (283), Expect = 2e-25
Identities = 69/178 (38%), Positives = 88/178 (48%), Gaps = 27/178 (15%)
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
+ FVGG+ T+ L + F +YG+I +II D+++G+ RGF FVTF D + D I
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPV-DKIVL 159
Query: 69 MNGQDMDGRNITVNEA-----------------------QSRGSGGGGGRGGGGYGGGGG 105
++G N V +A SRG G G GG + GG
Sbjct: 160 QKYHTINGHNAEVRKALSKQEMQDVQNTRNNRGGNFGFGDSRGGGNFGSGPGGNFRGGSD 219
Query: 106 GYGGG-GRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDGGSRYSRGGGGDGGSW 162
GYGGG G + GYN GG GG GGG YGGGR GYG GG+ Y GGG GG +
Sbjct: 220 GYGGGRGYGDNGYNGYGGGQGGGNYGGGPSYGGGRGGGYG--GGAGYGNQGGGYGGGY 275
Score = 63.2 bits (152), Expect = 3e-10
Identities = 44/94 (46%), Positives = 47/94 (49%), Gaps = 25/94 (26%)
Query: 87 RGSGGGGGRG----GGGYGGG-----GGGYGGGGRRE--GGYNRSSGG------GGGYGG 129
RG G GGG G GGGYGGG GG YGGGG G YN+ S GG +GG
Sbjct: 254 RGGGYGGGAGYGNQGGGYGGGYDNYGGGNYGGGGNYNDFGNYNQQSSNYGPMKSGGNFGG 313
Query: 130 G---GGGGYGGGRDRGYGDDGGSRYSRGGGGDGG 160
GGG YGGG YG G+ GGG GG
Sbjct: 314 NRSMGGGPYGGG---NYGP--GNASGGNGGGYGG 342
Score = 53.9 bits (128), Expect = 2e-07
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
+ F+GGL++ T E+L + Q+G + D ++ D + RSRGFGFVTF+ + DA
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEV-DAAMA 68
Query: 69 MNGQDMDGRNITVNEAQSR 87
+DGR + A +R
Sbjct: 69 TRPHTIDGRVVEPKRAVAR 87
Score = 43.1 bits (100), Expect = 3e-04
Identities = 26/62 (41%), Positives = 29/62 (45%), Gaps = 5/62 (8%)
Query: 68 GMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGY 127
G N D N ++ + G GG GG GGG YGGG G N S G GGGY
Sbjct: 286 GGNYNDFGNYN---QQSSNYGPMKSGGNFGGNRSMGGGPYGGGNYGPG--NASGGNGGGY 340
Query: 128 GG 129
GG
Sbjct: 341 GG 342
Score = 34.3 bits (77), Expect = 0.13
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 71 GQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGG-GGGYGGGGR 112
G G N N + G GGG G G GG GGGYGG R
Sbjct: 303 GPMKSGGNFGGNRSMGGGPYGGGNYGPGNASGGNGGGYGGRNR 345
Score = 28.9 bits (63), Expect = 5.4
Identities = 16/28 (57%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 89 SGGGGGRGGGGYGGG---GGGYGGGGRR 113
S GGG GGG YG G GG GG G R
Sbjct: 316 SMGGGPYGGGNYGPGNASGGNGGGYGGR 343
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.312 0.144 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,641,733
Number of Sequences: 164201
Number of extensions: 1869247
Number of successful extensions: 93698
Number of sequences better than 10.0: 1924
Number of HSP's better than 10.0 without gapping: 1552
Number of HSP's successfully gapped in prelim test: 390
Number of HSP's that attempted gapping in prelim test: 10683
Number of HSP's gapped (non-prelim): 21703
length of query: 164
length of database: 59,974,054
effective HSP length: 102
effective length of query: 62
effective length of database: 43,225,552
effective search space: 2679984224
effective search space used: 2679984224
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC134242.10