BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC131249.9 - phase: 0 /pseudo
(421 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U... 35 0.36
HSP1_PLAMS (O18746) Sperm protamine P1 35 0.36
GARP_PLAFF (P13816) Glutamic acid-rich protein precursor 35 0.36
A3D1_HUMAN (O14617) Adapter-related protein complex 3 delta 1 su... 35 0.36
RAL1_ONCVO (P11012) RAL-1 protein precursor (41 kDa larval antigen) 34 0.62
MST2_DROHY (Q08696) Axoneme-associated protein mst101(2) 34 0.62
RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U... 34 0.81
RNP2_MOUSE (Q8VH51) RNA-binding region containing protein 2 (Coa... 34 0.81
RNP2_HUMAN (Q14498) RNA-binding region containing protein 2 (Hep... 34 0.81
HSP1_PLATE (O18748) Sperm protamine P1 34 0.81
RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U... 33 1.1
HSP1_PSEWO (Q71VG4) Sperm protamine P1 33 1.1
HSP1_PSENI (Q71VG5) Sperm protamine P1 33 1.1
HSP1_PSEMD (P67832) Sperm protamine P1 33 1.1
HSP1_PLAGI (O18747) Sperm protamine P1 33 1.1
HSP1_PARBI (O18768) Sperm protamine P1 33 1.1
HSP1_PARAP (P67831) Sperm protamine P1 33 1.1
HSP1_MYOWA (Q71VG9) Sperm protamine P1 33 1.1
HSP1_MYOME (Q71VH0) Sperm protamine P1 33 1.1
HSP1_DASRO (P67830) Sperm protamine P1 33 1.1
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1
snRNP 70 kDa) (snRNP70) (U1-70K)
Length = 437
Score = 35.0 bits (79), Expect = 0.36
Identities = 14/41 (34%), Positives = 29/41 (70%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
+RRS+ +R+ +R R +++R+R+R+R + K +KRR+ +
Sbjct: 254 RRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSR 294
>HSP1_PLAMS (O18746) Sperm protamine P1
Length = 61
Score = 35.0 bits (79), Expect = 0.36
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 232 CKR--RSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKKCHC 276
C+R RS+ R C R+R+R+ +R R+ R+ H ++RR ++ C
Sbjct: 3 CRRHSRSRSRSRNQCQRRRRRRYNRRRTYRRSRR-HSRRRRGRRRGC 48
>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor
Length = 678
Score = 35.0 bits (79), Expect = 0.36
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
K+ KE + K +++K KK K+ +K K+ K H K++++KK
Sbjct: 120 KKDKKEKKHKKDKKEKKEKKDKKEKKDKKEKKHKKEKKHKK 160
Score = 33.1 bits (74), Expect = 1.4
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
K + + + KI +K+K++++++ ++ KERK KK R +K
Sbjct: 268 KEKEMKEQEKIEKKKKKQEEKEKKKQEKERKKQEKKERKQK 308
Score = 31.2 bits (69), Expect = 5.2
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKR----KERKFHGKKRRNKKCH 275
+++ +E ERK +K +++K K +K+ KERK +K + KK H
Sbjct: 289 EKKKQEKERKKQEKKERKQKEKEMKKQKKIEKERKKKEEKEKKKKKH 335
Score = 30.8 bits (68), Expect = 6.8
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
K++ +E + K K ++K+ K+ RK+KE++ +K+ K+
Sbjct: 281 KKKKQEEKEKKKQEKERKKQEKKERKQKEKEMKKQKKIEKE 321
>A3D1_HUMAN (O14617) Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) (AP-3 complex delta subunit)
(Delta-adaptin)
Length = 1153
Score = 35.0 bits (79), Expect = 0.36
Identities = 15/41 (36%), Positives = 26/41 (62%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
K R KE +++ +K + K+K++RK KE + GKK+ K+
Sbjct: 854 KERDKEKKKEKEKKKSPKPKKKKHRKEKEERTKGKKKSKKQ 894
>RAL1_ONCVO (P11012) RAL-1 protein precursor (41 kDa larval antigen)
Length = 388
Score = 34.3 bits (77), Expect = 0.62
Identities = 14/38 (36%), Positives = 26/38 (67%)
Query: 236 SKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
++E E+K + +K+KK+++N K K+ K +KR N+K
Sbjct: 348 TREGEKKKGKKTKKQKKKEKNEKIKKEKMKKRKRANRK 385
>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)
Length = 1391
Score = 34.3 bits (77), Expect = 0.62
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKKCHCHQAA 280
K++ +E+E+K C K+KK +K+ E + +K+ +K C +AA
Sbjct: 356 KKQKEEDEKKACKELAKKKKEADEKKKCEEAANKEKKAAEKKKCEKAA 403
Score = 34.3 bits (77), Expect = 0.62
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKKCHCHQAA 280
K+R +E E+K C + K++K +K+ E+ +K+ +K C +AA
Sbjct: 834 KKRKEEAEKKKCEKTAKKRKETAEKKKCEKAAKKRKQAAEKKKCEKAA 881
Score = 32.7 bits (73), Expect = 1.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKKCHCHQAA 280
K+R +E E+K C + K++K +K+ E+ +K +K C + A
Sbjct: 802 KKRKEEAEKKKCEKTAKKRKEAAEKKKCEKAAKKRKEEAEKKKCEKTA 849
Score = 32.3 bits (72), Expect = 2.3
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKKCHCHQAA 280
K+R + E+K C + K++K + +K+ E+ +K +K C +AA
Sbjct: 818 KKRKEAAEKKKCEKAAKKRKEEAEKKKCEKTAKKRKETAEKKKCEKAA 865
Score = 32.3 bits (72), Expect = 2.3
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKKCHCHQAA 280
K+R + E+K C + K++K +K+ E+ +K +K C +AA
Sbjct: 548 KKRKEAAEKKKCEKSAKKRKEAAEKKKCEKAAKERKEAAEKKKCEEAA 595
Score = 32.0 bits (71), Expect = 3.1
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKKCHCHQAA 280
K+R + E+K C + K++K +K+ E+ +K +K C +AA
Sbjct: 532 KKRKEAAEKKKCEKAAKKRKEAAEKKKCEKSAKKRKEAAEKKKCEKAA 579
Score = 31.6 bits (70), Expect = 4.0
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKKCHCHQAA 280
K+R + E+K C + K++K+ +K+ E+ +K +K C +AA
Sbjct: 850 KKRKETAEKKKCEKAAKKRKQAAEKKKCEKAAKKRKEAAEKKKCAEAA 897
Score = 30.8 bits (68), Expect = 6.8
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKKCHCHQAA 280
K+ K E+K C + K+KK K K+ GKK +K C + A
Sbjct: 724 KKIKKAAEKKKCKKLAKKKKAGEKNKLKKGNKKGKKALKEKKKCRELA 771
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1
snRNP 70 kDa) (snRNP70) (U1-70K)
Length = 471
Score = 33.9 bits (76), Expect = 0.81
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNK 272
+RRS+ ER+ +R R++++RKR R++ + K K + NK
Sbjct: 247 RRRSRSRERRRKSRSREKEERKRTREKSKDKDKEKDKDNK 286
Score = 31.6 bits (70), Expect = 4.0
Identities = 13/40 (32%), Positives = 27/40 (67%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNK 272
+ R KE + +R R+R+++ R+R+++ERK +K ++K
Sbjct: 238 REREKEPRERRRSRSRERRRKSRSREKEERKRTREKSKDK 277
Score = 30.8 bits (68), Expect = 6.8
Identities = 13/40 (32%), Positives = 22/40 (54%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNK 272
+ RS+E E++ R+R R + +R + R K K+ R K
Sbjct: 234 RERSREREKEPRERRRSRSRERRRKSRSREKEERKRTREK 273
>RNP2_MOUSE (Q8VH51) RNA-binding region containing protein 2
(Coactivator of activating protein-1 and estrogen
receptors) (Coactivator of AP-1 and ERs) (Transcription
coactivator CAPER)
Length = 530
Score = 33.9 bits (76), Expect = 0.81
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
K RS+ +ERK K K +KR R+R+RK+ K +KR K
Sbjct: 39 KSRSRSHERK--RSKSKERKRSRDRERKKSKSRERKRSRSK 77
Score = 30.8 bits (68), Expect = 6.8
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKR---KERKFHGKKRRNKKCHCHQAAP 281
++RSK ERK + ++K + R RKR KER+ + R+++ +P
Sbjct: 47 RKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSP 98
>RNP2_HUMAN (Q14498) RNA-binding region containing protein 2
(Hepatocellular carcinoma protein 1) (Splicing factor
HCC1)
Length = 530
Score = 33.9 bits (76), Expect = 0.81
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
K RS+ +ERK K K +KR R+R+RK+ K +KR K
Sbjct: 39 KSRSRSHERK--RSKSKERKRSRDRERKKSKSRERKRSRSK 77
Score = 30.8 bits (68), Expect = 6.8
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKR---KERKFHGKKRRNKKCHCHQAAP 281
++RSK ERK + ++K + R RKR KER+ + R+++ +P
Sbjct: 47 RKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSP 98
>HSP1_PLATE (O18748) Sperm protamine P1
Length = 62
Score = 33.9 bits (76), Expect = 0.81
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 232 CKR--RSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK--CHCHQAA 280
C+R RS+ R C R+R+R R R + + H ++RR ++ C C + +
Sbjct: 3 CRRHIRSRSRSRNQCQRRRRRSHYNRRRTYRRSRRHSRRRRVRRRGCSCRRCS 55
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1
SNRNP 70 kDa) (snRNP70) (Fragment)
Length = 378
Score = 33.5 bits (75), Expect = 1.1
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
+RRS+ +R+ +R R + +R+R+R+R + K +KRR+ +
Sbjct: 184 RRRSRSRDRQRRSRSRDKDERRRSRERTKDKDRDRKRRSSR 224
>HSP1_PSEWO (Q71VG4) Sperm protamine P1
Length = 62
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 2/43 (4%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKF--HGKKRRNKK 273
+R S+ R R+R+R+ R RNR+R R+ H ++RR ++
Sbjct: 4 RRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRR 46
>HSP1_PSENI (Q71VG5) Sperm protamine P1
Length = 62
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 2/43 (4%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKF--HGKKRRNKK 273
+R S+ R R+R+R+ R RNR+R R+ H ++RR ++
Sbjct: 4 RRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRR 46
>HSP1_PSEMD (P67832) Sperm protamine P1
Length = 62
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 2/43 (4%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKF--HGKKRRNKK 273
+R S+ R R+R+R+ R RNR+R R+ H ++RR ++
Sbjct: 4 RRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRR 46
>HSP1_PLAGI (O18747) Sperm protamine P1
Length = 61
Score = 33.5 bits (75), Expect = 1.1
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 232 CKR--RSKENERKICARKRKRKKRKRNRKRKERKFHGKKR-RNKKCHCHQAA 280
C+R RS+ R C R+R+R +R R+ R+ ++R R + C C + +
Sbjct: 3 CRRHSRSRSRSRNQCQRRRRRHYNRRRTYRRSRRHSRRRRVRRRGCSCRRCS 54
>HSP1_PARBI (O18768) Sperm protamine P1
Length = 61
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 2/43 (4%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKF--HGKKRRNKK 273
+R S+ R R+R+R+ R RNR+R R+ H ++RR ++
Sbjct: 4 RRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRR 46
>HSP1_PARAP (P67831) Sperm protamine P1
Length = 62
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 2/43 (4%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKF--HGKKRRNKK 273
+R S+ R R+R+R+ R RNR+R R+ H ++RR ++
Sbjct: 4 RRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRR 46
>HSP1_MYOWA (Q71VG9) Sperm protamine P1
Length = 62
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 2/43 (4%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKF--HGKKRRNKK 273
+R S+ R R+R+R+ R RNR+R R+ H ++RR ++
Sbjct: 4 RRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRR 46
>HSP1_MYOME (Q71VH0) Sperm protamine P1
Length = 62
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 2/43 (4%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKF--HGKKRRNKK 273
+R S+ R R+R+R+ R RNR+R R+ H ++RR ++
Sbjct: 4 RRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRR 46
>HSP1_DASRO (P67830) Sperm protamine P1
Length = 62
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 2/43 (4%)
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKF--HGKKRRNKK 273
+R S+ R R+R+R+ R RNR+R R+ H ++RR ++
Sbjct: 4 RRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRR 46
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.385 0.173 0.749
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,257,401
Number of Sequences: 164201
Number of extensions: 1055690
Number of successful extensions: 17437
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 15468
Number of HSP's gapped (non-prelim): 1114
length of query: 421
length of database: 59,974,054
effective HSP length: 113
effective length of query: 308
effective length of database: 41,419,341
effective search space: 12757157028
effective search space used: 12757157028
T: 11
A: 40
X1: 13 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (22.0 bits)
S2: 67 (30.4 bits)
Medicago: description of AC131249.9