BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130803.17 + phase: 0
(532 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RX2_BRARE (O42357) Retinal homeobox protein Rx2 35 0.37
Y6G2_ENCCU (Q8SV63) Hypothetical protein ECU06_1620 35 0.63
TA4B_HUMAN (Q92750) Transcription initiation factor TFIID 105 kD... 34 1.1
PRX1_CHICK (Q91018) Homeobox prospero-like protein PROX1 (PROX 1) 34 1.1
POLG_TUMVQ (Q02597) Genome polyprotein [Contains: P1 proteinase ... 33 1.8
PFDB_PYRHO (O58268) Prefoldin beta subunit (GimC beta subunit) 32 5.4
GOA2_RAT (Q62839) Golgi autoantigen, golgin subfamily A member 2... 32 5.4
FAU_DROME (Q9VGX3) Anoxia up-regulated protein 32 5.4
EFA6_HUMAN (Q9NYI0) Pleckstrin and Sec7 domain containing protei... 32 5.4
YAJ8_SCHPO (Q09908) Hypothetical protein C30D11.08c in chromosome I 31 7.0
UBP8_MOUSE (Q80U87) Ubiquitin carboxyl-terminal hydrolase 8 (EC ... 31 7.0
PEPL_HUMAN (O60437) Periplakin (195 kDa cornified envelope precu... 31 7.0
MYSN_ACACA (P05659) Myosin II heavy chain, non muscle 31 7.0
AMIR_PSEAE (P10932) Aliphatic amidase regulator 31 7.0
YO22_CAEEL (P34672) Hypothetical protein ZK688.2 in chromosome III 31 9.2
PRX1_MOUSE (P48437) Homeobox prospero-like protein PROX1 (PROX 1) 31 9.2
HSF4_ARATH (Q96320) Heat shock factor protein 4 (HSF 4) (Heat sh... 31 9.2
HOK1_HUMAN (Q9UJC3) Hook homolog 1 (h-hook1) (hHK1) 31 9.2
HMW2_MYCPN (P75471) Cytadherence high molecular weight protein 2... 31 9.2
GRPE_CLOAB (P30726) GrpE protein (HSP-70 cofactor) 31 9.2
>RX2_BRARE (O42357) Retinal homeobox protein Rx2
Length = 327
Score = 35.4 bits (80), Expect = 0.37
Identities = 36/125 (28%), Positives = 52/125 (40%), Gaps = 25/125 (20%)
Query: 62 YNSSSVPDLVSLRELALKV-----KSQTGFRLRYGGLLTLLRTDVDEKLVHTLVQFYDPS 116
+ S PD+ S ELA+KV + Q F+ R + EK+ ++ +D
Sbjct: 154 FEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRA------KWRRQEKMDTGTMKLHDSP 207
Query: 117 FRCFTFPDFQLVPTLEAYSNLVGL------PIAEKTP------FTGPGTSLTPLVIAKDL 164
R F P + P + SN + L P++ TP F GPG SL P A
Sbjct: 208 IRSFNRPP--MAPNVGPMSNSLPLDPWLSSPLSSATPMHSIPGFMGPGQSLQPTYTAHPG 265
Query: 165 YLKTS 169
+L TS
Sbjct: 266 FLNTS 270
>Y6G2_ENCCU (Q8SV63) Hypothetical protein ECU06_1620
Length = 579
Score = 34.7 bits (78), Expect = 0.63
Identities = 17/74 (22%), Positives = 40/74 (53%), Gaps = 3/74 (4%)
Query: 441 EHLAMESHEKQVWKARYNQAENLIMTLDGRDEQKTHENL---MLKKELAKARKELEEKDE 497
+ + +++H + + +++ G + K + N M+K+ + +E+E++ +
Sbjct: 260 DEILLDAHREYGGEVTKELVMQMLLGKKGEEIDKRYINKVANMIKERQRRREREIEKRVK 319
Query: 498 LLLRDSKRAKGRRD 511
LLRD ++AKGR+D
Sbjct: 320 KLLRDEEKAKGRKD 333
>TA4B_HUMAN (Q92750) Transcription initiation factor TFIID 105 kDa
subunit (TAFII-105) (TAFII105) (Fragment)
Length = 801
Score = 33.9 bits (76), Expect = 1.1
Identities = 26/78 (33%), Positives = 39/78 (49%), Gaps = 4/78 (5%)
Query: 434 ATQDMYQEHLAMESHEKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKARKELE 493
ATQ+ + L + Q Y +EN I+ D R + K E L +L K RK+LE
Sbjct: 626 ATQERLRGLLEKLTAIAQHRMTTYKASENYILCSDTRSQLKFLEKL---DQLEKQRKDLE 682
Query: 494 EKDELLLRDSKRAKGRRD 511
E+ E+LL+ +K + D
Sbjct: 683 ER-EMLLKAAKSRSNKED 699
>PRX1_CHICK (Q91018) Homeobox prospero-like protein PROX1 (PROX 1)
Length = 736
Score = 33.9 bits (76), Expect = 1.1
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 15/80 (18%)
Query: 446 ESHEKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKARKELEEKDELLLRDSKR 505
E+ KQ W + Q+ +++ R EQK E LK++L +K+L + E
Sbjct: 206 ENKRKQNWPQQQQQSFQQLVS--ARKEQKREERRQLKQQLEDMQKQLRQLQE-------- 255
Query: 506 AKGRRDFFARYCGSDSESDD 525
+F+ Y +DSE+D+
Sbjct: 256 -----EFYQIYDSTDSENDE 270
>POLG_TUMVQ (Q02597) Genome polyprotein [Contains: P1 proteinase
(N-terminal protein); Helper component proteinase (EC
3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1);
Cytoplasmic inclusion protein (CI); 6 kDa protein 2
(6K2); Viral genome-linked p
Length = 3163
Score = 33.1 bits (74), Expect = 1.8
Identities = 37/120 (30%), Positives = 57/120 (46%), Gaps = 17/120 (14%)
Query: 402 WVIDRA------EEIGMPYPAMRYVSSSTPSIPLPLLPATQDMYQEHLAM-ESHEKQVWK 454
W+I++A +E PY A ++ + L PA +D+ Q A+ E +E V
Sbjct: 2815 WMIEQAPFSSLAQEGKAPYIA----ETALRKLYLDKEPAQEDLTQYLQAIFEDYEDGVEA 2870
Query: 455 ARYNQAENLIMTLDGRDEQKTHENLMLKKELAKARKELEEKDELLLRDSK---RAKGRRD 511
Y+QA + D +EQK E KKE KA KE E + +L + K + +G+RD
Sbjct: 2871 CVYHQAGETL-DADLTEEQKQAEKE--KKEREKAEKERERQKQLAFKKGKDVAQEEGKRD 2927
>PFDB_PYRHO (O58268) Prefoldin beta subunit (GimC beta subunit)
Length = 117
Score = 31.6 bits (70), Expect = 5.4
Identities = 22/67 (32%), Positives = 34/67 (49%), Gaps = 4/67 (5%)
Query: 437 DMYQEHLAMESHEKQVWKARYNQAENLIMTL----DGRDEQKTHENLMLKKELAKARKEL 492
D YQ+ L + +KQ +A N+A+ + + D KT L++K KA +EL
Sbjct: 16 DTYQQQLQLVIQQKQKVQADLNEAKKALEEIETLPDDAQIYKTVGTLIVKTTKEKAVQEL 75
Query: 493 EEKDELL 499
+EK E L
Sbjct: 76 KEKIETL 82
>GOA2_RAT (Q62839) Golgi autoantigen, golgin subfamily A member 2
(Cis-Golgi matrix protein GM130)
Length = 986
Score = 31.6 bits (70), Expect = 5.4
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 429 LPLLPATQDMYQEHLAMESHEKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKA 488
L L +D Y E+L ES +W+ R Q + L EQ+ + L+ LA+
Sbjct: 374 LKQLQVERDQYAENLKGES---AMWQQRVQQMAEQVHALKEEKEQRESQVQELEASLAEL 430
Query: 489 RKELEE 494
R ++EE
Sbjct: 431 RSQMEE 436
>FAU_DROME (Q9VGX3) Anoxia up-regulated protein
Length = 619
Score = 31.6 bits (70), Expect = 5.4
Identities = 29/101 (28%), Positives = 47/101 (45%), Gaps = 9/101 (8%)
Query: 413 PYPAMRYVSSST-PSIPLPLLPATQDMYQEHLAMESHEKQVWKARYNQAENLIMTLDGRD 471
P PA++YV + P+ P A + + ++ L +E+ EKQ R Q L + + D
Sbjct: 272 PRPAVKYVDAELDPNRPSRKFSAPRPL-EDPLDVEAKEKQ----RLRQERLLTVNEEALD 326
Query: 472 EQKTHENLMLKKELAKARKE---LEEKDELLLRDSKRAKGR 509
E + K + AK R+E EE+D L K+A +
Sbjct: 327 EVDLEKKRAQKADEAKRREERALKEERDRLTAEAEKQAAAK 367
>EFA6_HUMAN (Q9NYI0) Pleckstrin and Sec7 domain containing protein 3
(Exchange factor for ADP-ribosylation factor guanine
nucleotide factor 6) (Hepatocellular
carcinoma-associated antigen 67)
Length = 534
Score = 31.6 bits (70), Expect = 5.4
Identities = 30/105 (28%), Positives = 42/105 (39%), Gaps = 12/105 (11%)
Query: 413 PYPAMRYVSSSTPSIPLPLLPATQDMYQEHLAMESHEKQVWKARYNQAENLIMTLDGRDE 472
P+PA S PLLPAT + ++SHE ++ + AE+ D + +
Sbjct: 390 PFPA---AIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRSYPPDKKVK 446
Query: 473 QKTHENLMLKK---ELAKARKEL------EEKDELLLRDSKRAKG 508
K + LK E K R E+ E ELL D A G
Sbjct: 447 AKDVDEYKLKDHYLEFEKTRYEMYVSILKEGGKELLSNDESEAAG 491
>YAJ8_SCHPO (Q09908) Hypothetical protein C30D11.08c in chromosome I
Length = 538
Score = 31.2 bits (69), Expect = 7.0
Identities = 32/107 (29%), Positives = 43/107 (39%), Gaps = 7/107 (6%)
Query: 414 YPAMRYVSSSTPSIPLPLLPATQD-MYQEHLAMESHEKQVWKA-----RYNQAENLIMTL 467
Y R S T S P +PA+ + +AM K+ W A R N A+ L T
Sbjct: 125 YAHHRSADSQTKSALPPNVPASSSPLPPMSIAMNIARKRSWPASLAIERDNTADALFSTE 184
Query: 468 DGRDEQKTHENLMLKKELAKARKELEEKDELLLRDSKRAKGRRDFFA 514
DGR+EQ E + K K + + L +R GRR A
Sbjct: 185 DGREEQFNLEGVKTKSG-RKVHRPNHFDPLVKLPTRRRGPGRRPVVA 230
>UBP8_MOUSE (Q80U87) Ubiquitin carboxyl-terminal hydrolase 8 (EC
3.1.2.15) (Ubiquitin thiolesterase 8)
(Ubiquitin-specific processing protease 8)
(Deubiquitinating enzyme 8) (mUBPy)
Length = 1080
Score = 31.2 bits (69), Expect = 7.0
Identities = 17/45 (37%), Positives = 27/45 (59%), Gaps = 4/45 (8%)
Query: 471 DEQKTHENLMLKKELAKARKELEEKD----ELLLRDSKRAKGRRD 511
+ ++ E+L L+ E A+ RK+LEEKD E L + ++ GR D
Sbjct: 101 EAERLSESLKLRYEEAEVRKQLEEKDRREEEQLQQQKRQEMGRED 145
>PEPL_HUMAN (O60437) Periplakin (195 kDa cornified envelope precursor)
(190 kDa paraneoplastic pemphigus antigen)
Length = 1756
Score = 31.2 bits (69), Expect = 7.0
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 427 IPLPLLPATQDMYQEHLAMESHEKQVWKARYNQAENLIMTL-----DGRDEQKTHENLML 481
+P P+L + Q LA E H+ Q+ + + + L DG E E L +
Sbjct: 941 VPDPVLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEYVVKEVLRI 1000
Query: 482 KKELAKARKELEEKDELLLRDSKRAKGRRD 511
+ + A+A + L+ ++E L +R KG R+
Sbjct: 1001 EPDRAQADEVLQLREE--LEALRRQKGARE 1028
>MYSN_ACACA (P05659) Myosin II heavy chain, non muscle
Length = 1509
Score = 31.2 bits (69), Expect = 7.0
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 449 EKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKARKELEEKDELLLRDSKRAKG 508
+K+ +A+ + E+ + LDG+ + LK ++ + ++ LEE + R K K
Sbjct: 1144 QKKALEAKLTELEDQVTALDGQKNAAAAQAKTLKTQVDETKRRLEEAEASAARLEKERKN 1203
Query: 509 RRDFFARYCGS-DSESD 524
D A+ D+E D
Sbjct: 1204 ALDEVAQLTADLDAERD 1220
>AMIR_PSEAE (P10932) Aliphatic amidase regulator
Length = 196
Score = 31.2 bits (69), Expect = 7.0
Identities = 23/83 (27%), Positives = 44/83 (52%), Gaps = 7/83 (8%)
Query: 429 LPLLPATQDMYQEHLAMESHEKQVWK-----ARYNQAENLIMTLDGRDEQKTHENLMLKK 483
LP+L + + + +E ++ +Q+ + AR NQA+ L+M G DE++ H+ L +
Sbjct: 116 LPVLVSARRISEEMAKLKQKTEQLQERIAGQARINQAKALLMQRHGWDEREAHQ--YLSR 173
Query: 484 ELAKARKELEEKDELLLRDSKRA 506
E K R+ + + + LL + A
Sbjct: 174 EAMKRREPILKIAQELLGNEPSA 196
>YO22_CAEEL (P34672) Hypothetical protein ZK688.2 in chromosome III
Length = 632
Score = 30.8 bits (68), Expect = 9.2
Identities = 20/72 (27%), Positives = 35/72 (47%), Gaps = 1/72 (1%)
Query: 456 RYNQAENLIMTLDGRDEQKTHENLMLKKELAKARKELEEKDELLLRDSKRAKGRRDFFAR 515
R+N+A + T RDE+K E L++E ++E + K++ + ++ R FF
Sbjct: 553 RFNEATGQLETEVKRDEKKKKEE-ELREEGDNGKEEKDNKEDKKEEQDRPSRPTRPFFIG 611
Query: 516 YCGSDSESDDLP 527
S+SE P
Sbjct: 612 VVRSESEDHSHP 623
>PRX1_MOUSE (P48437) Homeobox prospero-like protein PROX1 (PROX 1)
Length = 737
Score = 30.8 bits (68), Expect = 9.2
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 434 ATQDMYQEHLAMESHEKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKARKELE 493
A Q + E+ KQ K Q ++ + R EQK E LK++L +K+L
Sbjct: 194 APQSVSPRESYRENKRKQ--KLPQQQQQSFQQLVSARKEQKREERRQLKQQLEDMQKQLR 251
Query: 494 EKDELLLRDSKRAKGRRDFFARYCGSDSESDD 525
+ E F+ Y +DSE+D+
Sbjct: 252 QLQE-------------KFYQVYDSTDSENDE 270
>HSF4_ARATH (Q96320) Heat shock factor protein 4 (HSF 4) (Heat shock
transcription factor 4) (HSTF 4)
Length = 284
Score = 30.8 bits (68), Expect = 9.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 461 ENLIMTLDGRDEQKTHENLMLKKELAKARKELEE 494
EN++ L G +E+ EN L ELA A+K+ +E
Sbjct: 150 ENMVADLSGENEKLKRENNNLSSELAAAKKQRDE 183
>HOK1_HUMAN (Q9UJC3) Hook homolog 1 (h-hook1) (hHK1)
Length = 728
Score = 30.8 bits (68), Expect = 9.2
Identities = 25/76 (32%), Positives = 39/76 (50%), Gaps = 8/76 (10%)
Query: 434 ATQDMYQEHLAMESHEKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKARKELE 493
A Q ++ AME +K +A N+I TLD + + E ++L+K+LA E E
Sbjct: 591 ALQKKDEDMKAMEER----YKMYLEKARNVIKTLDPKLNPASAEIMLLRKQLA----EKE 642
Query: 494 EKDELLLRDSKRAKGR 509
+ E+L + K AK R
Sbjct: 643 RRIEILESECKVAKFR 658
>HMW2_MYCPN (P75471) Cytadherence high molecular weight protein 2
(Cytadherence accessory protein 2)
Length = 1818
Score = 30.8 bits (68), Expect = 9.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 476 HENLMLKKELAKARKELEEKDELLLRDSKRAK 507
H+N +L+K LA+ +E+ KD LL + + AK
Sbjct: 1531 HQNKLLQKNLAEREREINNKDSLLTQKIQTAK 1562
>GRPE_CLOAB (P30726) GrpE protein (HSP-70 cofactor)
Length = 200
Score = 30.8 bits (68), Expect = 9.2
Identities = 27/97 (27%), Positives = 43/97 (43%), Gaps = 15/97 (15%)
Query: 440 QEHLAMESHEKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKELAKARKELEEKDELL 499
QE + +E + ++ K + + DE + ENL LK E K + EL+ + L
Sbjct: 20 QEEIEVEGNSEESSKEEESNNSEI------SDENLSEENLKLKDENEKLKNELDAAKDRL 73
Query: 500 LRDS--------KRAKGRRDFFARYCGSDSESDDLPT 528
LR S + AK + + C SD ++ LPT
Sbjct: 74 LRLSAEYENYRNRTAKEKEGIYTDAC-SDVINEMLPT 109
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,781,589
Number of Sequences: 164201
Number of extensions: 2619379
Number of successful extensions: 7361
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 7343
Number of HSP's gapped (non-prelim): 33
length of query: 532
length of database: 59,974,054
effective HSP length: 115
effective length of query: 417
effective length of database: 41,090,939
effective search space: 17134921563
effective search space used: 17134921563
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Medicago: description of AC130803.17