BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC129715.1 + phase: 0
(416 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VS09_ROTHD (P11850) Glycoprotein VP7 (Serotype-specific antigen)... 36 0.21
VS09_ROTHA (P04328) Glycoprotein VP7 (Serotype-specific antigen)... 36 0.21
MYSB_CAEEL (P02566) Myosin heavy chain B (MHC B) 35 0.46
VS09_ROTHH (P11851) Glycoprotein VP7 (Serotype-specific antigen)... 34 0.61
TMS4_MOUSE (Q8VCA5) Transmembrane protease, serine 4 (EC 3.4.21.... 33 1.8
RECX_LEGPN (P37864) Regulatory protein recX 33 1.8
YTRP_PSEPU (P40604) Hypothetical 62.7 kDa protein in trpE-trpG i... 32 3.0
VS09_ROTHS (P04510) Glycoprotein VP7 (Serotype-specific antigen)... 31 5.1
SFB2_HUMAN (Q14151) Scaffold attachment factor B2 31 6.7
ROB3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-l... 30 8.8
ENV_EIAV3 (P22429) ENV polyprotein precursor (Coat polyprotein) ... 30 8.8
>VS09_ROTHD (P11850) Glycoprotein VP7 (Serotype-specific antigen)
(Outer shell glycoprotein)
Length = 326
Score = 35.8 bits (81), Expect = 0.21
Identities = 28/130 (21%), Positives = 56/130 (42%), Gaps = 21/130 (16%)
Query: 179 FYGAKATINVWEPKIQQT-NEFSLSQIWVLGGSFGQDLNSIEAGWQVSPDLYGDNNTRLF 237
+Y A+A + + + + T ++ L++ W +G + +D N I + V+P LY D N L
Sbjct: 84 YYPAEAKNEISDDEWENTLSQLFLTKGWPIGSVYFKDYNDINT-FSVNPQLYCDYNVVLM 142
Query: 238 TYWTSDAYQATGCYNLLCSGFIQVSSDIAMGASISPISSYRDSQYDISILIWKDPKEGHW 297
Y + A+ +L+ ++ + + DIS+ ++ E +
Sbjct: 143 RYDNTSELDASELADLI-------------------LNEWLCNPMDISLYYYQQSSESNK 183
Query: 298 WMQFGNQGTV 307
W+ G TV
Sbjct: 184 WISMGTDCTV 193
>VS09_ROTHA (P04328) Glycoprotein VP7 (Serotype-specific antigen)
(Outer shell glycoprotein)
Length = 326
Score = 35.8 bits (81), Expect = 0.21
Identities = 28/130 (21%), Positives = 56/130 (42%), Gaps = 21/130 (16%)
Query: 179 FYGAKATINVWEPKIQQT-NEFSLSQIWVLGGSFGQDLNSIEAGWQVSPDLYGDNNTRLF 237
+Y A+A + + + + T ++ L++ W +G + +D N I + V+P LY D N L
Sbjct: 84 YYPAEAKNEISDDEWENTLSQLFLTKGWPIGSVYFKDYNDINT-FSVNPQLYCDYNVVLM 142
Query: 238 TYWTSDAYQATGCYNLLCSGFIQVSSDIAMGASISPISSYRDSQYDISILIWKDPKEGHW 297
Y + A+ +L+ ++ + + DIS+ ++ E +
Sbjct: 143 RYDNTSELDASELADLI-------------------LNEWLCNPMDISLYYYQQSSESNK 183
Query: 298 WMQFGNQGTV 307
W+ G TV
Sbjct: 184 WISMGTDCTV 193
>MYSB_CAEEL (P02566) Myosin heavy chain B (MHC B)
Length = 1966
Score = 34.7 bits (78), Expect = 0.46
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 82 QMRPNFHPEGLFEENKLDDNKEKSSTPINQLWHANGKCSEGTIPIRRTK----------E 131
Q + F EGL + ++L+D K + + IN+L A + + +TK +
Sbjct: 1382 QWKARFEGEGLLKADELEDAKRRQAQKINELQEALDAANSKNASLEKTKSRLVGDLDDAQ 1441
Query: 132 EDVLRASSAKRYGRKKHKSFAK 153
DV RA+ KK K F K
Sbjct: 1442 VDVERANGVASALEKKQKGFDK 1463
>VS09_ROTHH (P11851) Glycoprotein VP7 (Serotype-specific antigen)
(Outer shell glycoprotein)
Length = 326
Score = 34.3 bits (77), Expect = 0.61
Identities = 27/119 (22%), Positives = 48/119 (39%), Gaps = 23/119 (19%)
Query: 189 WEPKIQQTNEFSLSQIWVLGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQAT 248
WE + Q L++ W +G + +D N I + V+P LY D N L Y + A+
Sbjct: 98 WENTLSQ---LFLTKGWPIGSVYFKDYNDINT-FSVNPQLYCDYNVVLMRYDNTSELDAS 153
Query: 249 GCYNLLCSGFIQVSSDIAMGASISPISSYRDSQYDISILIWKDPKEGHWWMQFGNQGTV 307
+L+ ++ + + DIS+ ++ E + W+ G TV
Sbjct: 154 ELADLI-------------------LNEWLCNPMDISLYYYQQSSESNKWISMGTDCTV 193
>TMS4_MOUSE (Q8VCA5) Transmembrane protease, serine 4 (EC 3.4.21.-)
(Channel-activating protease 2) (mCAP2)
Length = 435
Score = 32.7 bits (73), Expect = 1.8
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 204 IWVLGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQVSS 263
+WV+G F ++ + + + ++TR DAY+ +LC+G Q
Sbjct: 322 VWVIGWGFTEENGGKMSDMLLQASVQVIDSTRCNA---EDAYEGEVTAEMLCAGTPQGGK 378
Query: 264 DIAMGASISPISSYRDSQYDISILIW 289
D G S P+ + D + I+ W
Sbjct: 379 DTCQGDSGGPLMYHSDKWQVVGIVSW 404
>RECX_LEGPN (P37864) Regulatory protein recX
Length = 150
Score = 32.7 bits (73), Expect = 1.8
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 132 EDVLRASSAKRYGRKKHKSFAKPRSAEPDLVNQSGHQHAIAYVEGDKFYGAKATINVWEP 191
E+ +R + YG K + K + +PDL+ HQ +V Y +A WE
Sbjct: 56 ENYIRVRIHQGYGPLKIRQELKNKGIDPDLIQSVLHQEKDNWVN----YALRA----WEK 107
Query: 192 KIQQTNEFSLSQI 204
K ++ ++FS S+I
Sbjct: 108 KFKRQDDFSYSEI 120
>YTRP_PSEPU (P40604) Hypothetical 62.7 kDa protein in trpE-trpG
intergenic region precursor
Length = 592
Score = 32.0 bits (71), Expect = 3.0
Identities = 24/121 (19%), Positives = 46/121 (37%), Gaps = 20/121 (16%)
Query: 203 QIWVLGGSFGQDLNSIEAGWQVSP-----------DLYGDNNTRLFTYWTSDAYQATGCY 251
+ W + G G +L + + WQ++P D Y + + R D + +
Sbjct: 468 EAWAISGRLGYNLAADSSNWQLAPFISADYARVKVDGYDEKSGRSTALGFDDQARTSRRL 527
Query: 252 NLLCSGFIQVSSDIAMGASISPISSYRDSQYDISILIWKDPKEGHWWMQFGNQGTVLGYW 311
L G +QV + A ++ + D + D+++ + P N T+ GY
Sbjct: 528 GLGLQGSVQVLPSTRLFAEVAQEHEFEDDRQDVTMHLTSLP---------ANDFTLTGYT 578
Query: 312 P 312
P
Sbjct: 579 P 579
>VS09_ROTHS (P04510) Glycoprotein VP7 (Serotype-specific antigen)
(Outer shell glycoprotein)
Length = 326
Score = 31.2 bits (69), Expect = 5.1
Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 21/130 (16%)
Query: 179 FYGAKATINVWEPKIQQT-NEFSLSQIWVLGGSFGQDLNSIEAGWQVSPDLYGDNNTRLF 237
+Y A+A + + + + T ++ L++ W G + +D N I + ++P LY D N L
Sbjct: 84 YYPAEAKNEISDDEWENTLSQLFLTKGWPTGSVYFKDYNDITT-FSMNPQLYCDYNVVLM 142
Query: 238 TYWTSDAYQATGCYNLLCSGFIQVSSDIAMGASISPISSYRDSQYDISILIWKDPKEGHW 297
Y + + +L+ ++ + + DIS+ ++ E +
Sbjct: 143 RYDNTSELDVSELADLI-------------------LNEWLCNPMDISLYYYQQNSESNK 183
Query: 298 WMQFGNQGTV 307
W+ G TV
Sbjct: 184 WISMGTDCTV 193
>SFB2_HUMAN (Q14151) Scaffold attachment factor B2
Length = 953
Score = 30.8 bits (68), Expect = 6.7
Identities = 17/74 (22%), Positives = 35/74 (46%)
Query: 77 KDHKIQMRPNFHPEGLFEENKLDDNKEKSSTPINQLWHANGKCSEGTIPIRRTKEEDVLR 136
K+ KI+ + PE + +E K D + T +++ + + E T+ + ++K E V+
Sbjct: 525 KEEKIEKKEEKKPEDIKKEEKDQDELKPGPTNRSRVTKSGSRGMERTVVMDKSKGEPVIS 584
Query: 137 ASSAKRYGRKKHKS 150
+ R + KS
Sbjct: 585 VKTTSRSKERSSKS 598
>ROB3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-like
protein 3)
Length = 1386
Score = 30.4 bits (67), Expect = 8.8
Identities = 18/44 (40%), Positives = 20/44 (44%), Gaps = 2/44 (4%)
Query: 189 WEPKI--QQTNEFSLSQIWVLGGSFGQDLNSIEAGWQVSPDLYG 230
WEP + QQ + QIW LG LN AGW S L G
Sbjct: 791 WEPPLPSQQNGVITEYQIWCLGNESRFHLNRSAAGWARSAMLRG 834
>ENV_EIAV3 (P22429) ENV polyprotein precursor (Coat polyprotein)
[Contains: Coat protein GP90; Coat protein GP45]
Length = 859
Score = 30.4 bits (67), Expect = 8.8
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 138 SSAKRYGRKKHKSFAKPRSAEPDLVNQSGHQHAIAYVEGDKFYGAKATINVWEPKIQQTN 197
SS RY +KK R D S H + GDK+Y K + N W + ++ N
Sbjct: 655 SSGSRYLKKKFHHKHASREDTWDQAQHSIHLAGVTGGSGDKYYKQKYSRNDWNGESEEYN 714
Query: 198 EFSLSQIWVLG-GSFGQDLNSIEAGWQVS 225
S WV +FG+ S + ++S
Sbjct: 715 RRPKS--WVKSIEAFGESYISEKTKGEIS 741
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.316 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,079,169
Number of Sequences: 164201
Number of extensions: 2460533
Number of successful extensions: 4796
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4789
Number of HSP's gapped (non-prelim): 13
length of query: 416
length of database: 59,974,054
effective HSP length: 113
effective length of query: 303
effective length of database: 41,419,341
effective search space: 12550060323
effective search space used: 12550060323
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Medicago: description of AC129715.1