BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122161.8 - phase: 0 /pseudo
         (473 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SNC3_HUMAN (Q92966) snRNA activating protein complex 50 kDa subu...   122  3e-27
CHD4_HUMAN (Q14839) Chromodomain helicase-DNA-binding protein 4 ...    31  7.9

>SNC3_HUMAN (Q92966) snRNA activating protein complex 50 kDa subunit
           (SNAPc 50 kDa subunit) (Proximal sequence
           element-binding transcription factor beta subunit)
           (PSE-binding factor beta subunit) (PTF beta subunit)
          Length = 411

 Score =  122 bits (305), Expect = 3e-27
 Identities = 64/186 (34%), Positives = 93/186 (49%), Gaps = 30/186 (16%)

Query: 286 SGYFLIEDVFYTDLRDPSAIDLTRPILDWLQNSKEEAQKKWEYIINGELQQKQKAIVGEA 345
           S +F  E  FY D R P   DL+R I++W ++      K                     
Sbjct: 249 SAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGK--------------------- 287

Query: 346 SVSHLPRFASFEMHKIHFCDLGFRLGAGYLYCHQGDCTHTLVIRDMRLIHADDVQNWAVY 405
                  F +  M    F DL  +LG  YLYCHQGDC H +VI D+RL+H DD  +  +Y
Sbjct: 288 -------FQTARMEDFTFNDLCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLY 340

Query: 406 PIVTFQLKIRFQKCGVCKIFRATKVTVDDKWTPDNPCYFCDECFSLLHLAEDGGSPMYTD 465
           P++  +  +  +KC VCK++ A  VT +D + P++PC+FCD CF +LH   +G      +
Sbjct: 341 PLLIKKHWLWTRKCFVCKMYTARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNK--LGE 398

Query: 466 FIEYDY 471
           F+ Y Y
Sbjct: 399 FLAYPY 404


>CHD4_HUMAN (Q14839) Chromodomain helicase-DNA-binding protein 4
            (CHD-4) (Mi-2 autoantigen 218 kDa protein) (Mi2-beta)
          Length = 1912

 Score = 30.8 bits (68), Expect = 7.9
 Identities = 23/83 (27%), Positives = 40/83 (47%), Gaps = 10/83 (12%)

Query: 284  DPSGYFLIEDVFYTDLRDPSAIDLTRPILDWLQNSKEEAQKKWEYIINGEL-----QQKQ 338
            +P G   +E V      + SAIDLT  +++  +  KEE +KK   + NGE       +KQ
Sbjct: 1634 EPKGAADVEKV-----EEKSAIDLTPIVVEDKEEKKEEEEKKEVMLQNGETPKDLNDEKQ 1688

Query: 339  KAIVGEASVSHLPRFASFEMHKI 361
            K  + +  + ++      E+H +
Sbjct: 1689 KKNIKQRFMFNIADGGFTELHSL 1711


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.334    0.146    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,808,526
Number of Sequences: 164201
Number of extensions: 2234286
Number of successful extensions: 7719
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7716
Number of HSP's gapped (non-prelim): 4
length of query: 473
length of database: 59,974,054
effective HSP length: 114
effective length of query: 359
effective length of database: 41,255,140
effective search space: 14810595260
effective search space used: 14810595260
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 68 (30.8 bits)