BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC119419.1 + phase: 0 /partial
(107 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RS13_PEA (P46298) 40S ribosomal protein S13 209 1e-54
R13B_ARATH (P59224) 40S ribosomal protein S13-2 207 3e-54
R13A_ARATH (P59223) 40S ribosomal protein S13-1 207 3e-54
RS13_SOYBN (P62302) 40S ribosomal protein S13 207 5e-54
RS13_MAIZE (Q05761) 40S ribosomal protein S13 182 9e-47
RS13_XENLA (P49393) 40S ribosomal protein S13 179 1e-45
RS13_RAT (P62278) 40S ribosomal protein S13 179 1e-45
RS13_MOUSE (P62301) 40S ribosomal protein S13 179 1e-45
RS13_HUMAN (P62277) 40S ribosomal protein S13 179 1e-45
RS13_CRIGR (Q9WVH0) 40S ribosomal protein S13 179 1e-45
RS13_CHICK (Q6ITC7) 40S ribosomal protein S13 179 1e-45
RS13_LUMRU (O77303) 40S ribosomal protein S13 179 1e-45
RS13_WUCBA (P62300) 40S ribosomal protein S13 (40S ribosomal pro... 177 3e-45
RS13_BRUPA (P62299) 40S ribosomal protein S13 (17.4K protein) 177 3e-45
RS13_ICTPU (P47772) 40S ribosomal protein S13 176 7e-45
RS13_GILMI (Q9DFR6) 40S ribosomal protein S13 176 9e-45
RS13_SCHPO (P28189) 40S ribosomal protein S13 175 2e-44
RS13_CANMA (P33192) 40S ribosomal protein S13 (S15) 174 4e-44
RS13_YEAST (P05756) 40S ribosomal protein S13 (S27A) (YS15) 173 7e-44
RS13_SPOFR (Q962R6) 40S ribosomal protein S13 172 2e-43
>RS13_PEA (P46298) 40S ribosomal protein S13
Length = 151
Score = 209 bits (531), Expect = 1e-54
Identities = 104/107 (97%), Positives = 106/107 (98%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
VDETICKFAKKGLTPSQIGVILRDSHGIAQVK+VTG+KILRILKAHGLAPEIPEDLYHLI
Sbjct: 33 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAVSIRKHLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 93 KKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139
>R13B_ARATH (P59224) 40S ribosomal protein S13-2
Length = 151
Score = 207 bits (528), Expect = 3e-54
Identities = 102/107 (95%), Positives = 106/107 (98%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
VDE+ICKFAKKGLTPSQIGVILRDSHGI QVK+VTG+KILRILKAHGLAPEIPEDLYHLI
Sbjct: 33 VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 93 KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139
>R13A_ARATH (P59223) 40S ribosomal protein S13-1
Length = 151
Score = 207 bits (528), Expect = 3e-54
Identities = 102/107 (95%), Positives = 106/107 (98%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
VDE+ICKFAKKGLTPSQIGVILRDSHGI QVK+VTG+KILRILKAHGLAPEIPEDLYHLI
Sbjct: 33 VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 93 KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139
>RS13_SOYBN (P62302) 40S ribosomal protein S13
Length = 151
Score = 207 bits (526), Expect = 5e-54
Identities = 102/107 (95%), Positives = 105/107 (97%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V+E ICKFAKKGLTPSQIGVILRDSHGIAQV +VTG+KILRILKAHGLAPEIPEDLYHLI
Sbjct: 33 VEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 93 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139
>RS13_MAIZE (Q05761) 40S ribosomal protein S13
Length = 151
Score = 182 bits (463), Expect = 9e-47
Identities = 91/107 (85%), Positives = 97/107 (90%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V+E I K AKKG PSQIGV+LRD HGI VK+VTG+KILRILKAHGLAPEIPEDLY LI
Sbjct: 33 VEEMITKAAKKGQMPSQIGVLLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLI 92
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP W
Sbjct: 93 KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTW 139
>RS13_XENLA (P49393) 40S ribosomal protein S13
Length = 150
Score = 179 bits (454), Expect = 1e-45
Identities = 87/107 (81%), Positives = 97/107 (90%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K AKKGLTPSQIGVILRDSHG+AQV+ VTGNKILRILK+ GLAP++PEDLYHLI
Sbjct: 32 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK + LPP W
Sbjct: 92 KKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTRRVLPPNW 138
>RS13_RAT (P62278) 40S ribosomal protein S13
Length = 150
Score = 179 bits (454), Expect = 1e-45
Identities = 87/107 (81%), Positives = 97/107 (90%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K AKKGLTPSQIGVILRDSHG+AQV+ VTGNKILRILK+ GLAP++PEDLYHLI
Sbjct: 32 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK + LPP W
Sbjct: 92 KKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNW 138
>RS13_MOUSE (P62301) 40S ribosomal protein S13
Length = 150
Score = 179 bits (454), Expect = 1e-45
Identities = 87/107 (81%), Positives = 97/107 (90%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K AKKGLTPSQIGVILRDSHG+AQV+ VTGNKILRILK+ GLAP++PEDLYHLI
Sbjct: 32 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK + LPP W
Sbjct: 92 KKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNW 138
>RS13_HUMAN (P62277) 40S ribosomal protein S13
Length = 150
Score = 179 bits (454), Expect = 1e-45
Identities = 87/107 (81%), Positives = 97/107 (90%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K AKKGLTPSQIGVILRDSHG+AQV+ VTGNKILRILK+ GLAP++PEDLYHLI
Sbjct: 32 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK + LPP W
Sbjct: 92 KKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNW 138
>RS13_CRIGR (Q9WVH0) 40S ribosomal protein S13
Length = 150
Score = 179 bits (454), Expect = 1e-45
Identities = 87/107 (81%), Positives = 97/107 (90%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K AKKGLTPSQIGVILRDSHG+AQV+ VTGNKILRILK+ GLAP++PEDLYHLI
Sbjct: 32 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK + LPP W
Sbjct: 92 KKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNW 138
>RS13_CHICK (Q6ITC7) 40S ribosomal protein S13
Length = 150
Score = 179 bits (454), Expect = 1e-45
Identities = 87/107 (81%), Positives = 97/107 (90%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K AKKGLTPSQIGVILRDSHG+AQV+ VTGNKILRILK+ GLAP++PEDLYHLI
Sbjct: 32 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK + LPP W
Sbjct: 92 KKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNW 138
>RS13_LUMRU (O77303) 40S ribosomal protein S13
Length = 150
Score = 179 bits (453), Expect = 1e-45
Identities = 91/107 (85%), Positives = 94/107 (87%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K AKKGLTPSQIGVILRDSHG+AQ + V GNKILRILKA GLAP IPEDLY LI
Sbjct: 32 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQTRHVAGNKILRILKAKGLAPTIPEDLYFLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK K LPPVW
Sbjct: 92 KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKTRKVLPPVW 138
>RS13_WUCBA (P62300) 40S ribosomal protein S13 (40S ribosomal
protein S15)
Length = 150
Score = 177 bits (450), Expect = 3e-45
Identities = 86/107 (80%), Positives = 96/107 (89%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E + + AKKGL PSQIGVILRDSHG+AQV+ VTGNKI+RILKA G+APEIPEDLYHLI
Sbjct: 32 VQEQVTRLAKKGLRPSQIGVILRDSHGVAQVRRVTGNKIVRILKAKGMAPEIPEDLYHLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV+IRKHLERNRKDKDSK+RLILVESRIHRLARYYK ++LP W
Sbjct: 92 KKAVNIRKHLERNRKDKDSKYRLILVESRIHRLARYYKTKRQLPATW 138
>RS13_BRUPA (P62299) 40S ribosomal protein S13 (17.4K protein)
Length = 150
Score = 177 bits (450), Expect = 3e-45
Identities = 86/107 (80%), Positives = 96/107 (89%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E + + AKKGL PSQIGVILRDSHG+AQV+ VTGNKI+RILKA G+APEIPEDLYHLI
Sbjct: 32 VQEQVTRLAKKGLRPSQIGVILRDSHGVAQVRRVTGNKIVRILKAKGMAPEIPEDLYHLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV+IRKHLERNRKDKDSK+RLILVESRIHRLARYYK ++LP W
Sbjct: 92 KKAVNIRKHLERNRKDKDSKYRLILVESRIHRLARYYKTKRQLPATW 138
>RS13_ICTPU (P47772) 40S ribosomal protein S13
Length = 150
Score = 176 bits (447), Expect = 7e-45
Identities = 87/107 (81%), Positives = 96/107 (89%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K AKKGLTPSQIGVILRDSHG+AQV+ VTGNKILRILK+ GLAP++PEDLYHLI
Sbjct: 32 VKEQIFKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV++RKHLERNRKDKD+KFRLILVESRIHRLARYYK + L P W
Sbjct: 92 KKAVAVRKHLERNRKDKDAKFRLILVESRIHRLARYYKTKRVLAPNW 138
>RS13_GILMI (Q9DFR6) 40S ribosomal protein S13
Length = 150
Score = 176 bits (446), Expect = 9e-45
Identities = 86/107 (80%), Positives = 96/107 (89%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K AKKGLTPSQIGVILRDSHG+AQV+ VTGNKILRILK+ GLAP++PEDLYHLI
Sbjct: 32 VKEQIFKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK + L P W
Sbjct: 92 KKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLAPNW 138
>RS13_SCHPO (P28189) 40S ribosomal protein S13
Length = 150
Score = 175 bits (443), Expect = 2e-44
Identities = 84/107 (78%), Positives = 96/107 (89%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I KF+KKG++PSQIGV LRDSHGI QV+ +TG KI+RILKA+GLAPE+PEDLY+LI
Sbjct: 32 VVEQILKFSKKGMSPSQIGVTLRDSHGIPQVRFITGQKIMRILKANGLAPELPEDLYNLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAVS+RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+K LPP W
Sbjct: 92 KKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYRKVGALPPTW 138
>RS13_CANMA (P33192) 40S ribosomal protein S13 (S15)
Length = 150
Score = 174 bits (440), Expect = 4e-44
Identities = 82/107 (76%), Positives = 96/107 (89%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E + K+A+KGLTPSQIGVILRD+HG++Q K VTGNK+LRILK++GLAPE+PEDLY LI
Sbjct: 32 VVEQVIKYARKGLTPSQIGVILRDAHGVSQAKIVTGNKVLRILKSNGLAPELPEDLYFLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV++RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+ LPP W
Sbjct: 92 KKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTVSVLPPNW 138
>RS13_YEAST (P05756) 40S ribosomal protein S13 (S27A) (YS15)
Length = 150
Score = 173 bits (438), Expect = 7e-44
Identities = 81/107 (75%), Positives = 96/107 (89%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K+A+KGLTPSQIGV+LRD+HG+ Q + +TGNKI+RILK++GLAPEIPEDLY+LI
Sbjct: 32 VIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGLAPEIPEDLYYLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAVS+RKHLERNRKDKD+KFRLIL+ESRIHRLARYY+ LPP W
Sbjct: 92 KKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVAVLPPNW 138
>RS13_SPOFR (Q962R6) 40S ribosomal protein S13
Length = 150
Score = 172 bits (435), Expect = 2e-43
Identities = 85/107 (79%), Positives = 94/107 (87%)
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V E I K KKGLTPSQIGV+LRDSHG+AQV+ VTG KILRI+KA GLAP++PEDLY+LI
Sbjct: 32 VKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLI 91
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAV++RKHLERNRKDKDSKFRLILVESRIHRLARYYK LPP W
Sbjct: 92 KKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 138
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.139 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,145,857
Number of Sequences: 164201
Number of extensions: 436662
Number of successful extensions: 1424
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1370
Number of HSP's gapped (non-prelim): 63
length of query: 107
length of database: 59,974,054
effective HSP length: 83
effective length of query: 24
effective length of database: 46,345,371
effective search space: 1112288904
effective search space used: 1112288904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC119419.1