BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149306.10 - phase: 0 /pseudo
         (138 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK63175.1| spore germination protein GerQB [Bacillus cereus]       31  5.6
ref|ZP_00235302.1| spore germination protein QB [Bacillus cereus...    31  7.4
gb|AAO35445.1| ethanolamine utilization protein [Clostridium tet...    31  7.4
gb|AAP10042.1| Spore germination protein QB [Bacillus cereus ATC...    30  9.6
ref|YP_037211.1| spore germination protein, GerB family [Bacillu...    30  9.6
ref|NP_972052.1| membrane protein, putative [Treponema denticola...    30  9.6

>gb|AAK63175.1| spore germination protein GerQB [Bacillus cereus]
          Length = 360

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 15/38 (39%), Positives = 21/38 (54%)

Query: 98  LFP*IFFFFLNIRGVVKFLRKLLGSIGIQYVYLWIVVV 135
           LF  I  FFLN R  +  L    G IG  Y+Y+++ V+
Sbjct: 311 LFIFILSFFLNNRNKINLLNTWTGQIGFVYIYVYLPVL 348


>ref|ZP_00235302.1| spore germination protein QB [Bacillus cereus G9241]
           gi|47558409|gb|EAL16732.1| spore germination protein QB
           [Bacillus cereus G9241]
          Length = 360

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 14/38 (36%), Positives = 21/38 (54%)

Query: 98  LFP*IFFFFLNIRGVVKFLRKLLGSIGIQYVYLWIVVV 135
           LF  +  FFLN R  +  L    G IG  Y+Y+++ V+
Sbjct: 311 LFIFVLSFFLNNRNKINLLNTWTGQIGFVYIYVYLPVL 348


>gb|AAO35445.1| ethanolamine utilization protein [Clostridium tetani E88]
           gi|28210564|ref|NP_781508.1| ethanolamine utilization
           protein [Clostridium tetani E88]
          Length = 265

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 81  LSSGLLSFLFQGSYMYNLFP*IFFFFLNIRGVVKFLRKLLGSIGI 125
           ++ GLL  + +G  +YN+ P I F FL   G++K   KL+    I
Sbjct: 58  IAGGLLCDVDKGYMLYNMIPIILFSFLLSIGLIKIPDKLINIFNI 102


>gb|AAP10042.1| Spore germination protein QB [Bacillus cereus ATCC 14579]
           gi|30021210|ref|NP_832841.1| Spore germination protein
           QB [Bacillus cereus ATCC 14579]
          Length = 360

 Score = 30.4 bits (67), Expect = 9.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 98  LFP*IFFFFLNIRGVVKFLRKLLGSIGIQYVYLWIVVV 135
           LF  +  FFLN R  +  L    G IG  Y+Y+++ ++
Sbjct: 311 LFIFVLSFFLNNRNKINLLNTWTGQIGFVYIYVYLPIL 348


>ref|YP_037211.1| spore germination protein, GerB family [Bacillus thuringiensis
           serovar konkukian str. 97-27] gi|49329563|gb|AAT60209.1|
           spore germination protein, GerB family [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 360

 Score = 30.4 bits (67), Expect = 9.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 98  LFP*IFFFFLNIRGVVKFLRKLLGSIGIQYVYLWIVVV 135
           LF  +  FFLN R  +  L    G IG  Y+Y+++ ++
Sbjct: 311 LFIFVLSFFLNNRNKINLLNTWTGQIGFVYIYVYLPIL 348


>ref|NP_972052.1| membrane protein, putative [Treponema denticola ATCC 35405]
           gi|41817269|gb|AAS11963.1| membrane protein, putative
           [Treponema denticola ATCC 35405]
          Length = 209

 Score = 30.4 bits (67), Expect = 9.6
 Identities = 22/71 (30%), Positives = 32/71 (44%), Gaps = 4/71 (5%)

Query: 65  ISIFWWPSGSFEICPILSSGLLSFLFQGSYMYNLFP*IFFFF----LNIRGVVKFLRKLL 120
           I + ++P  S +I   LSS L  F FQ  ++  LF   FFF     L+   +   L  L 
Sbjct: 42  IIVSFFPFSSLQISSYLSSHLCRFFFQYFFLNALFGLAFFFLISWSLSEETLSNSLSALF 101

Query: 121 GSIGIQYVYLW 131
           G     + YL+
Sbjct: 102 GIFSAVFAYLF 112


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.368    0.170    0.704 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,224,187
Number of Sequences: 2540612
Number of extensions: 5737096
Number of successful extensions: 33192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33187
Number of HSP's gapped (non-prelim): 6
length of query: 138
length of database: 863,360,394
effective HSP length: 114
effective length of query: 24
effective length of database: 573,730,626
effective search space: 13769535024
effective search space used: 13769535024
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 67 (30.4 bits)