BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148403.6 - phase: 0 /pseudo
         (1428 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|YP_241650.1| hypothetical protein XC_0549 [Xanthomonas campe...    39  1.7
emb|CAD77805.1| hypothetical protein-signal peptide and transmem...    38  2.2
ref|XP_640968.1| hypothetical protein DDB0215238 [Dictyostelium ...    37  4.8

>ref|YP_241650.1| hypothetical protein XC_0549 [Xanthomonas campestris pv. campestris
           str. 8004] gi|66572220|gb|AAY47630.1| conserved
           hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 103

 Score = 38.5 bits (88), Expect = 1.7
 Identities = 28/80 (35%), Positives = 51/80 (63%)

Query: 292 LRQRTRIV*SEVLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI*MERWLSKLQLR 351
           +  RT ++   +L +L++LL LLLL+L+L ++LLL ++ LL +L+ L+ +   L  L L 
Sbjct: 1   MAMRTAMLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 60

Query: 352 VR*LLLSYV*NVLCLCLVVI 371
           +  LLL  +  +L L L+++
Sbjct: 61  LLLLLLLLLLLLLLLLLLLL 80



 Score = 38.1 bits (87), Expect = 2.2
 Identities = 32/90 (35%), Positives = 56/90 (61%)

Query: 282 LLVESLL*LVLRQRTRIV*SEVLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI*M 341
           LL+  LL L+L     ++   +L +L++LL LLLL+L+L ++LLL ++ LL +L+ L+ +
Sbjct: 13  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 72

Query: 342 ERWLSKLQLRVR*LLLSYV*NVLCLCLVVI 371
              L  L L +  LLL  +  +L L L+++
Sbjct: 73  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 102



 Score = 37.7 bits (86), Expect = 2.8
 Identities = 33/97 (34%), Positives = 59/97 (60%), Gaps = 4/97 (4%)

Query: 275 LSLRGRRLLVESLL*LVLRQRTRIV*SEVLAILIILL*LLLLILVLHIVLLLSIVFLLWV 334
           +++R   LL+  LL L+L     ++    L +L++LL LLLL+L+L ++LLL ++ LL +
Sbjct: 1   MAMRTAMLLLLLLLLLLLLLLLLLL----LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 56

Query: 335 LIFLI*MERWLSKLQLRVR*LLLSYV*NVLCLCLVVI 371
           L+ L+ +   L  L L +  LLL  +  +L L L+++
Sbjct: 57  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 93



 Score = 36.2 bits (82), Expect = 8.3
 Identities = 33/98 (33%), Positives = 57/98 (57%)

Query: 254 ASVRTLCVLTAMERVTLVHSVLSLRGRRLLVESLL*LVLRQRTRIV*SEVLAILIILL*L 313
           A +  L +L  +  + L+  +L L    LL+  LL L+L     ++   +L +L++LL L
Sbjct: 6   AMLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 65

Query: 314 LLLILVLHIVLLLSIVFLLWVLIFLI*MERWLSKLQLR 351
           LLL+L+L ++LLL ++ LL +L+ L+ +   L  L LR
Sbjct: 66  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLR 103


>emb|CAD77805.1| hypothetical protein-signal peptide and transmembrane prediction
           [Rhodopirellula baltica SH 1]
           gi|32477734|ref|NP_870728.1| hypothetical protein-signal
           peptide and transmembrane prediction [Rhodopirellula
           baltica SH 1]
          Length = 122

 Score = 38.1 bits (87), Expect = 2.2
 Identities = 18/45 (40%), Positives = 34/45 (75%)

Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI*MERWLSK 347
           VL ++++L+ +L+L+LVL +VL+L +V +L +++ L+   RW SK
Sbjct: 7   VLVLVLVLVLVLVLVLVLVLVLVLVLVLVLVLVLVLVISVRWASK 51


>ref|XP_640968.1| hypothetical protein DDB0215238 [Dictyostelium discoideum]
           gi|60468990|gb|EAL66989.1| hypothetical protein
           DDB0215238 [Dictyostelium discoideum]
          Length = 230

 Score = 37.0 bits (84), Expect = 4.8
 Identities = 18/38 (47%), Positives = 31/38 (81%)

Query: 302 EVLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI 339
           E+L +L++LL LLLL+L+L ++LLL ++FL  +L+ L+
Sbjct: 170 ELLLLLLLLLLLLLLLLLLLLLLLLLLLFLFLLLLLLL 207


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.368    0.165    0.613 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,766,312,550
Number of Sequences: 2540612
Number of extensions: 57893925
Number of successful extensions: 256397
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 256255
Number of HSP's gapped (non-prelim): 28
length of query: 1428
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1287
effective length of database: 505,134,102
effective search space: 650107589274
effective search space used: 650107589274
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 82 (36.2 bits)