BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148218.5 - phase: 0
(164 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA32025.1| unnamed protein product [Nicotiana tabacum] gi|1... 90 2e-17
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 87 1e-16
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 86 4e-16
ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultiv... 86 5e-16
gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cult... 85 8e-16
ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cu... 85 8e-16
ref|XP_475489.1| putative polyprotein [Oryza sativa (japonica cu... 84 1e-15
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa (japonica cultivar... 84 1e-15
gb|AAK29467.1| polyprotein-like [Lycopersicon chilense] 84 1e-15
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] gi... 83 3e-15
emb|CAE04890.2| OSJNBa0042I15.12 [Oryza sativa (japonica cultiva... 82 7e-15
ref|NP_916849.1| retrovirus-related pol polyprotein from transpo... 81 1e-14
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 80 2e-14
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 79 4e-14
emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana] ... 78 8e-14
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 77 1e-13
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 77 1e-13
gb|AAP53866.1| putative polyprotein [Oryza sativa (japonica cult... 74 1e-12
ref|XP_469192.1| putative polyprotein [Oryza sativa (japonica cu... 72 4e-12
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 72 5e-12
>emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
gi|130582|sp|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease]
Length = 1328
Score = 90.1 bits (222), Expect = 2e-17
Identities = 51/147 (34%), Positives = 81/147 (54%), Gaps = 2/147 (1%)
Query: 2 GSKWDIEKFTGDNDFRLWKVKMEAVLIQQKCEKTLKGESSLPVTMSRAEKTEMVDKARSA 61
G K+++ KF GDN F W+ +M +LIQQ K L +S P TM + ++ ++A SA
Sbjct: 3 GVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASA 62
Query: 62 IVLCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMVKSKVVVELL 121
I L L + + E TA +W++ E LYM+K+L ++ LK+QLY+ M + + L
Sbjct: 63 IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHL 122
Query: 122 VEFNKIIGDFEN--IKLHLEDAGALMV 146
FN +I N +K+ ED L++
Sbjct: 123 NVFNGLITQLANLGVKIEEEDKAILLL 149
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25412027|pir||G84599 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 838
Score = 87.4 bits (215), Expect = 1e-16
Identities = 56/153 (36%), Positives = 83/153 (53%), Gaps = 12/153 (7%)
Query: 6 DIEKFTGDNDFRLWKVKMEA------VLIQQKCEKTLKGESSLPVTMSRAEKTE------ 53
++EK G+ D+ LWK K+ A +L + ++ ++ E S T S KTE
Sbjct: 7 EVEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTEDKVLKE 66
Query: 54 MVDKARSAIVLCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMVK 113
KARS ++L LGN LR+ KE TA M + L+M KSL +R LKQ+LY +KM
Sbjct: 67 KRGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSD 126
Query: 114 SKVVVELLVEFNKIIGDFENIKLHLEDAGALMV 146
S + E + +F K+I D EN+K+ + D +V
Sbjct: 127 SMTIEENVNDFFKLISDLENVKVSVPDEDQAIV 159
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 85.9 bits (211), Expect = 4e-16
Identities = 56/161 (34%), Positives = 81/161 (49%), Gaps = 20/161 (12%)
Query: 6 DIEKFTGDNDFRLWKVKM-----------------EAVLIQQKCEKTLKGESSLPVTMSR 48
++EKF GD D+ LWK K+ EAV+ E + G S+
Sbjct: 7 EVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDPETATSK 66
Query: 49 AEKT---EMVDKARSAIVLCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQ 105
E E KARS I+L LGN LR+ K+ TA M + L+M KSL +R LKQ+
Sbjct: 67 LEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQR 126
Query: 106 LYSFKMVKSKVVVELLVEFNKIIGDFENIKLHLEDAGALMV 146
LY +KM ++ + E + +F K+I D EN+K+ + D +V
Sbjct: 127 LYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIV 167
>ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultivar-group)]
gi|38344889|emb|CAD41912.2| OSJNBa0033G05.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1181
Score = 85.5 bits (210), Expect = 5e-16
Identities = 51/146 (34%), Positives = 76/146 (51%), Gaps = 1/146 (0%)
Query: 4 KWDIEKFTGDNDFRLWKVKMEAVLIQQKCEKTLKGESSLPVTMSRAEKTEMVDKARSAIV 63
K+D+ D F LW+VKM AVL QQ+ + L G S EK + KA S I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQELDDALSGFDKRTQDWSNDEK-KRDRKAMSYIH 63
Query: 64 LCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMVKSKVVVELLVE 123
L L N L+E KE TA +W K E + MTK L + LKQ+L+ K+ V++ L
Sbjct: 64 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSA 123
Query: 124 FNKIIGDFENIKLHLEDAGALMVWCC 149
F +I+ D E++++ ++ ++ C
Sbjct: 124 FKEIVADLESMEVKYDEKDLALILLC 149
>gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37535452|ref|NP_922028.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22094359|gb|AAM91886.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1280
Score = 84.7 bits (208), Expect = 8e-16
Identities = 52/146 (35%), Positives = 75/146 (50%), Gaps = 1/146 (0%)
Query: 4 KWDIEKFTGDNDFRLWKVKMEAVLIQQKCEKTLKGESSLPVTMSRAEKTEMVDKARSAIV 63
K+D+ D F LW+VKM AVL QQ + L G S EK + KA S I
Sbjct: 40 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKKD-RKAMSYIH 98
Query: 64 LCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMVKSKVVVELLVE 123
L L N L+E KE TA +W K E + MTK L + LKQ+L+ K+ V++ L
Sbjct: 99 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLST 158
Query: 124 FNKIIGDFENIKLHLEDAGALMVWCC 149
F +I+ D E+I++ ++ ++ C
Sbjct: 159 FKEIVADLESIEVKYDEEDLGLILLC 184
>ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475188|gb|AAT44257.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1211
Score = 84.7 bits (208), Expect = 8e-16
Identities = 51/146 (34%), Positives = 74/146 (49%), Gaps = 1/146 (0%)
Query: 4 KWDIEKFTGDNDFRLWKVKMEAVLIQQKCEKTLKGESSLPVTMSRAEKTEMVDKARSAIV 63
K+D+ D F LW+VKM AVL QQ + L G S EK + K S I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK-KRDRKTMSYIH 63
Query: 64 LCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMVKSKVVVELLVE 123
L L N L+E KE TA +W K E + MTK L + LKQ+L+ K+ V++ L
Sbjct: 64 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSA 123
Query: 124 FNKIIGDFENIKLHLEDAGALMVWCC 149
F KI+ D E++++ ++ ++ C
Sbjct: 124 FKKIVADLESMEVKYDEEDLCLILLC 149
>ref|XP_475489.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475213|gb|AAT44282.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1243
Score = 84.3 bits (207), Expect = 1e-15
Identities = 55/148 (37%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 4 KWDIEKFTGDNDFRLWKVKMEAVLIQQKCEKTLKGESSLPVTMSRAEKTEMVDKARSAIV 63
K+D+ D F LW+VKM AVL QQ + L G S EK + KA S I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK-KRDRKAISYIH 63
Query: 64 LCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMVKSKVVVELLVE 123
L L N L+E KE TA +W K E + MTK L + LKQ+L+ K+ + V++ L
Sbjct: 64 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHLSA 123
Query: 124 FNKIIGDFENIKL-HLEDAGALMVWCCL 150
F +I+ D E++++ + ED L++ C L
Sbjct: 124 FKEIVADLESMEVKYDEDDLGLILLCSL 151
>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa (japonica cultivar-group)]
Length = 1007
Score = 84.0 bits (206), Expect = 1e-15
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 4 KWDIEKFTGDNDFRLWKVKMEAVLIQQKCEKTLKGESSLPVTMSRAEKTEMVDKARSAIV 63
K+D+ D F LW+VKM AVL QQ + L G S+ EK KA S I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSKDEKKRDC-KAMSYIH 63
Query: 64 LCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMVKSKVVVELLVE 123
+ L N L+E KE TA +W K E + MTK L + LKQ+L+ K+ V++ L
Sbjct: 64 VHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLFA 123
Query: 124 FNKIIGDFENIKLHLEDAGALMVWCC 149
F +I+ D E++++ ++ ++ C
Sbjct: 124 FKEIVADLESMEVKYDEENLGLILLC 149
>gb|AAK29467.1| polyprotein-like [Lycopersicon chilense]
Length = 1328
Score = 84.0 bits (206), Expect = 1e-15
Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
Query: 2 GSKWDIEKFTGDND-FRLWKVKMEAVLIQQKCEKTLKGESSLPVTMSRAEKTEMVDKARS 60
G K+++ KF GD F +W+ +M+ +LIQQ K L G+S P +M + E+ +KA S
Sbjct: 3 GVKYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAAS 62
Query: 61 AIVLCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMVKSKVVVEL 120
AI L L + + E +A +W+K E LYM+K+L ++ LK+QLY+ M + +
Sbjct: 63 AIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSH 122
Query: 121 LVEFNKIIGDFENIKLHLED 140
L N +I N+ + +E+
Sbjct: 123 LNVLNGLITQLANLGVKIEE 142
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
gi|11278366|pir||T47492 copia-like polyprotein -
Arabidopsis thaliana
Length = 1363
Score = 82.8 bits (203), Expect = 3e-15
Identities = 54/155 (34%), Positives = 84/155 (53%), Gaps = 17/155 (10%)
Query: 2 GSKWDIEKFTGDNDFRLWKVKMEAVLIQQKCEKTLKGESSLPVTMSR------------A 49
G++ ++EKF G D+ +WK K+ A + L+ ES P+ R
Sbjct: 3 GARIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLR-ESETPMGKERDSEKSDEDEKEER 61
Query: 50 EKTEMVD----KARSAIVLCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQ 105
EK E + KARS IVL + ++ LR+ KET+A +M + LYM+K+L +R LKQ+
Sbjct: 62 EKMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQK 121
Query: 106 LYSFKMVKSKVVVELLVEFNKIIGDFENIKLHLED 140
LYSFKM ++ + + EF I+ D EN+ + + D
Sbjct: 122 LYSFKMSENLSIEGNIDEFLHIVADLENLNVLVSD 156
>emb|CAE04890.2| OSJNBa0042I15.12 [Oryza sativa (japonica cultivar-group)]
Length = 432
Score = 81.6 bits (200), Expect = 7e-15
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 4 KWDIEKFTGDNDFRLWKVKMEAVLIQQKCEKTLKGESSLPVTMSRAEKTEMVDKARSAIV 63
K+D+ KF G +F LW+ +++ +L QQ+ K LKG P M + EM +A + I
Sbjct: 43 KFDLVKFDGFGNFGLWQTRVKDLLAQQEVSKALKGVK--PAKMEDDDCEEMQLQAAATIR 100
Query: 64 LCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMVKSKVVVELLVE 123
CL ++ + +ET+ +W K E +M+K+L +++ LKQ+LY KM + + +
Sbjct: 101 RCLSDQIMYHVMEETSPKIIWEKLEAQFMSKTLTNKRYLKQKLYGLKMQEGADLTAHVNV 160
Query: 124 FNKIIGDFENIKLHLEDAGALMVWCC 149
FN+++ D + + ++D +V C
Sbjct: 161 FNQLVTDLVKMDVEVDDEDKAIVLLC 186
>ref|NP_916849.1| retrovirus-related pol polyprotein from transposon TNT 1-94-like
[Oryza sativa (japonica cultivar-group)]
Length = 425
Score = 80.9 bits (198), Expect = 1e-14
Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Query: 3 SKWDIEKFTGDNDFRLWKVKMEAVLIQQKCEKTLKGESSLPVTMSRAEKTEMVDKARSAI 62
SK+++ KF G +F LW+++++ +L QQ K L E ++P M + EM +A + I
Sbjct: 7 SKFEMVKFDGTGNFVLWQMRLKDLLAQQGISKAL--EETMPEKMDAGKWEEMKAQAAATI 64
Query: 63 VLCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMVKSKVVVELLV 122
L L + + + E T +W K LYM+KSL + LKQQLY +M + + + +
Sbjct: 65 RLSLSDSVMYQVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVD 124
Query: 123 EFNKIIGDFENIKLHLEDAGALMVWCC 149
FN+++ D + ++L D ++ C
Sbjct: 125 VFNQLVVDLSKLDVNLYDEDKAIILLC 151
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 2340
Score = 80.5 bits (197), Expect = 2e-14
Identities = 54/145 (37%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 4 KWDIEKFTGDNDFRLWKVKMEAVLIQQKCEKTLKGESSLPVTMSRAEKTEMVDKARSAIV 63
K+D+ D F LW+VKM AVL QQ + L G S EK + KA S I
Sbjct: 212 KYDLPLLYRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDEK-KRDRKAMSYIH 270
Query: 64 LCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMVKSKVVVELLVE 123
L L N L+E KE A +W K E + MTK L + LKQ L+ K+ V++ L
Sbjct: 271 LHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSA 330
Query: 124 FNKIIGDFEN--IKLHLEDAGALMV 146
F +II D E+ +K ED G +++
Sbjct: 331 FKEIIADLESMEVKYDEEDLGLILL 355
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301702|pir||E84601 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1333
Score = 79.0 bits (193), Expect = 4e-14
Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 15/150 (10%)
Query: 6 DIEKFTGDNDFRLWKVKMEAVLIQQKCEKTLKGESSLPVTMSRAEKTEMVDK-------- 57
++EKF G D+ +WK K+ A L LK E L ++ + TE +K
Sbjct: 7 EVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLRREL 66
Query: 58 -------ARSAIVLCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFK 110
ARSAIVL + ++ LR+ KE +A +M + LYM+K+L +R KQ+LYSFK
Sbjct: 67 LEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFK 126
Query: 111 MVKSKVVVELLVEFNKIIGDFENIKLHLED 140
M ++ + + EF +II D EN + + D
Sbjct: 127 MSENLSIEGNIDEFLRIIADLENTNVLVSD 156
>emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana]
gi|4539406|emb|CAB40039.1| putative retrotransposon
[Arabidopsis thaliana] gi|7444416|pir||T04181
hypothetical protein F7L13.40 - Arabidopsis thaliana
Length = 1230
Score = 78.2 bits (191), Expect = 8e-14
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 13/148 (8%)
Query: 6 DIEKFTGDNDFRLWKVKMEAVLIQQKCEKTLKGESSLPVTMSRAEK-------------T 52
++EKF G D+ LWK K+ A + L+ S+ + E+
Sbjct: 7 EMEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEALME 66
Query: 53 EMVDKARSAIVLCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMV 112
E KARS IVL + ++ LR++ KE TA SM + LYM+K+L +R LKQ+LYS+KM
Sbjct: 67 EKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLYSYKMQ 126
Query: 113 KSKVVVELLVEFNKIIGDFENIKLHLED 140
++ V + EF ++I D EN + + D
Sbjct: 127 ENLSVEGNIDEFLRLIADLENTNVLVSD 154
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301696|pir||F84486 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1356
Score = 77.4 bits (189), Expect = 1e-13
Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 15/150 (10%)
Query: 6 DIEKFTGDNDFRLWKVKMEAVLIQQKCEKTLKGESSLPVTMS-----------RAEKTEM 54
++EKF G D+ +WK K+ A + LK S S + EK E
Sbjct: 7 EVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEKFEA 66
Query: 55 VD----KARSAIVLCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFK 110
++ KARSAIVL + ++ LR+ KE+TA +M + LYM+K+L +R KQ+LYSFK
Sbjct: 67 LEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYSFK 126
Query: 111 MVKSKVVVELLVEFNKIIGDFENIKLHLED 140
M ++ V + EF +II D EN+ + + D
Sbjct: 127 MSENLSVEGNIDEFLQIITDLENMNVIISD 156
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1170
Score = 77.4 bits (189), Expect = 1e-13
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 4 KWDIEKFTGDNDFRLWKVKMEAVLIQQKCEKTLKGESSLPVTMSRAEKTEMVDKARSAIV 63
K+D+ D F LW+VKM+AVL QQ + L G S EK + KA S I
Sbjct: 5 KYDLSLLDRDIRFSLWQVKMQAVLAQQDLDDALSGFDKTTQDWSGDEK-KRGRKALSYIH 63
Query: 64 LCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMVKSKVVVELLVE 123
L L N L+ K+ TA +W K E + MTK L LKQ+L+ K+ + V++ L
Sbjct: 64 LHLSNNILQAVLKDETAAGLWLKLEQICMTKDLTSNMYLKQKLFLHKLQDDESVMDHLST 123
Query: 124 FNKIIGDFENIKL 136
F +II + E++++
Sbjct: 124 FKEIIAELESMEM 136
>gb|AAP53866.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37534554|ref|NP_921579.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 382
Score = 74.3 bits (181), Expect = 1e-12
Identities = 40/147 (27%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Query: 3 SKWDIEKFTGDNDFRLWKVKMEAVLIQQKCEKTLKGESSLPVTMSRAEKTEMVDKARSAI 62
SK+++ KF G +F LW+++++ +L QQ K L + ++P + + EM +A + I
Sbjct: 7 SKFEVVKFDGTGNFVLWQMRLKDLLAQQGISKAL--QETMPEKIDADKWNEMKAQAAATI 64
Query: 63 VLCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMVKSKVVVELLV 122
L L + + + E + +W K L+M+KSL + LKQQLY ++ + + + +
Sbjct: 65 RLSLSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQVQEESDLRKHVD 124
Query: 123 EFNKIIGDFENIKLHLEDAGALMVWCC 149
FN+++ D + + L+D ++ C
Sbjct: 125 VFNQLVVDLSKLDVKLDDEDKAIILLC 151
>ref|XP_469192.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa (japonica
cultivar-group)] gi|40538906|gb|AAR87163.1| putative
polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1322
Score = 72.4 bits (176), Expect = 4e-12
Identities = 47/158 (29%), Positives = 78/158 (48%), Gaps = 2/158 (1%)
Query: 4 KWDIEKFTGDNDFRLWKVKMEAVLIQQK-CEKTLKGESSLPVTMSRAEKTEMVDKARSAI 62
K+D+ F LW+VKM AVL Q ++ L+ T AE+ KA S I
Sbjct: 5 KYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLI 64
Query: 63 VLCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMVKSKVVVELLV 122
L L N L+E ++ TA +W K E + M+K L + +K +L+S K+ +S V+ +
Sbjct: 65 QLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVLNHIS 124
Query: 123 EFNKIIGDFENIKLHLEDAG-ALMVWCCLEDEEGDVSH 159
F +I+ D ++++ +D L++ C L + H
Sbjct: 125 VFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRH 162
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 72.0 bits (175), Expect = 5e-12
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 5/140 (3%)
Query: 1 MGSKWDIEKFTGDNDFRLWKVKMEAVLIQQKCEKTLKGESSLPVTMSRAEK-TEMVDKAR 59
M +K++IEKF G N F LWK+K++A+L + C L S PV + +K +EM + A
Sbjct: 1 MAAKFEIEKFNGKN-FSLWKLKVKAILRKDNC---LAAISERPVDFTDDKKWSEMNEDAM 56
Query: 60 SAIVLCLGNKDLREATKETTATSMWSKFEYLYMTKSLAHRQVLKQQLYSFKMVKSKVVVE 119
+ + L + + L ++ TA +W LY KSL ++ LK++LY+ +M +S V E
Sbjct: 57 ADLYLSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTE 116
Query: 120 LLVEFNKIIGDFENIKLHLE 139
L N + ++ +E
Sbjct: 117 HLNTLNTLFSQLTSLSCKIE 136
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.131 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 257,184,675
Number of Sequences: 2540612
Number of extensions: 8607434
Number of successful extensions: 20837
Number of sequences better than 10.0: 218
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 20699
Number of HSP's gapped (non-prelim): 227
length of query: 164
length of database: 863,360,394
effective HSP length: 118
effective length of query: 46
effective length of database: 563,568,178
effective search space: 25924136188
effective search space used: 25924136188
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)
Medicago: description of AC148218.5