BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147429.6 - phase: 0 /pseudo
(974 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC18922.1| putative reverse transcriptase [Arabidopsis thali... 44 0.026
gb|AAP44645.1| putative reverse transcriptase [Oryza sativa (jap... 40 0.49
gb|AAU89136.1| F-box domain containing protein [Oryza sativa (ja... 40 0.49
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 39 0.64
emb|CAE05018.2| OSJNBa0044M19.5 [Oryza sativa (japonica cultivar... 38 1.4
gb|AAP54317.1| hypothetical protein [Oryza sativa (japonica cult... 38 1.9
gb|AAD17419.1| putative non-LTR retroelement reverse transcripta... 38 1.9
emb|CAB77868.1| putative reverse transcriptase [Arabidopsis thal... 37 3.2
gb|AAV48010.1| ribonuclease H-like protein [Haloarcula marismort... 35 9.3
>gb|AAC18922.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7487819|pir||T00599 probable reverse transcriptase
At2g02650 [imported] - Arabidopsis thaliana
gi|15227011|ref|NP_178368.1| reverse
transcriptase-related [Arabidopsis thaliana]
Length = 365
Score = 43.9 bits (102), Expect = 0.026
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 897 YGFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDGNHTA 956
+G R V FE+D++SL+ I G D S LG + +I L C F+ R+ N A
Sbjct: 274 HGLRYVWFESDSKSLVTLINNG--EDHSLLGTLIYDIRHWMLKLPYCSLEFVNRERNSAA 331
Query: 957 HSLAQLAHSEPNL 969
+LA H+ L
Sbjct: 332 DALASHVHARDPL 344
>gb|AAP44645.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50917607|ref|XP_469200.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 404
Score = 39.7 bits (91), Expect = 0.49
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 893 LLKDYGFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDG 952
L K+ G + + +D ++I+RI+ DRS +G + +I +L F +C F + R
Sbjct: 310 LAKEEGLQHIVMASDCLTVIRRIQTS-GRDRSGVGCVIEDIKKLASTFVLCSFMHVNRLS 368
Query: 953 NHTAHSLAQLA 963
N AHSLA+ A
Sbjct: 369 NLAAHSLARNA 379
>gb|AAU89136.1| F-box domain containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 855
Score = 39.7 bits (91), Expect = 0.49
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 893 LLKDYGFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDG 952
L K+ G + + +D ++I+RI+ DRS +G + +I +L F +C F + R
Sbjct: 761 LAKEEGLQHIVMASDCLTVIRRIQTS-GRDRSGVGCVIEDIKKLASTFVLCSFMHVNRLS 819
Query: 953 NHTAHSLAQLA 963
N AHSLA+ A
Sbjct: 820 NLAAHSLARNA 830
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 39.3 bits (90), Expect = 0.64
Identities = 24/71 (33%), Positives = 38/71 (52%), Gaps = 1/71 (1%)
Query: 893 LLKDYGFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDG 952
L K+ G + +D ++I+RI+ DRS +G + +I +L F +C F + R
Sbjct: 1288 LAKEEGLEHIVMASDCLTVIRRIQTS-GRDRSGVGCVIEDIKKLASTFVLCSFMHVNRLS 1346
Query: 953 NHTAHSLAQLA 963
N AHSLA+ A
Sbjct: 1347 NLAAHSLARNA 1357
>emb|CAE05018.2| OSJNBa0044M19.5 [Oryza sativa (japonica cultivar-group)]
gi|50923821|ref|XP_472271.1| OSJNBa0044M19.5 [Oryza
sativa (japonica cultivar-group)]
Length = 140
Score = 38.1 bits (87), Expect = 1.4
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 898 GFRQVQFEADNESLIQRIKVGIDVDRSYLG-LFLSEIHQLQLNFDICHFSFIPRDGNHTA 956
G +VQFE D+ +L+Q +K + G L L + ++F++ F + PR+ N A
Sbjct: 43 GMMRVQFETDSLTLVQGLKSSNGYRLAATGGLCLDILQPCVISFNVFSFHYCPRNCNRVA 102
Query: 957 HSLAQL 962
H+LA L
Sbjct: 103 HALAAL 108
>gb|AAP54317.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37535456|ref|NP_922030.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
gi|22094342|gb|AAM91869.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 243
Score = 37.7 bits (86), Expect = 1.9
Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 3/77 (3%)
Query: 898 GFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDGNHTAH 957
G +Q E+D+ +LIQ ++ GL L + + +F C FS+ PR+ N A
Sbjct: 147 GMANIQLESDSLTLIQALREENFRYAPLGGLLLEAKNIITSSFVSCQFSYCPRECNKVAD 206
Query: 958 SLAQLAHSEP---NLVW 971
++A + + P +LVW
Sbjct: 207 AIASIGCNSPLNTDLVW 223
>gb|AAD17419.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411665|pir||H84532 hypothetical protein
At2g15750 [imported] - Arabidopsis thaliana
gi|15226615|ref|NP_179177.1| hypothetical protein
[Arabidopsis thaliana]
Length = 280
Score = 37.7 bits (86), Expect = 1.9
Identities = 21/64 (32%), Positives = 34/64 (52%), Gaps = 2/64 (3%)
Query: 898 GFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDGNHTAH 957
G +++ F +D+ +L++ I L L +IH L ++FD C F FI R N A
Sbjct: 208 GIKRISFASDSLTLVKAINRKFLTKE--LHRILHDIHSLSISFDACSFFFISRKHNSEAD 265
Query: 958 SLAQ 961
+LA+
Sbjct: 266 ALAK 269
>emb|CAB77868.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|3377824|gb|AAC28197.1| contains similarity to reverse
transcriptases [Arabidopsis thaliana]
gi|7487391|pir||T01474 hypothetical protein T24H24.17 -
Arabidopsis thaliana
Length = 1077
Score = 37.0 bits (84), Expect = 3.2
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 900 RQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDGNHTAHSL 959
+ + F +D++ +++ + + V L L +I L +FD C F+FI R+ NH A +L
Sbjct: 1009 KAISFASDSQIIVKALNQKLQVKE--LHGILHDILSLSSSFDACTFTFINREFNHQADAL 1066
Query: 960 AQLA 963
A+ A
Sbjct: 1067 AKRA 1070
>gb|AAV48010.1| ribonuclease H-like protein [Haloarcula marismortui ATCC 43049]
gi|55379866|ref|YP_137716.1| ribonuclease H-like protein
[Haloarcula marismortui ATCC 43049]
Length = 198
Score = 35.4 bits (80), Expect = 9.3
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 895 KDYGFRQVQFEADNESLIQRIKVGIDVDRSYLGLFLSEIHQLQLNFDICHFSFIPRDGNH 954
+DYGF V D+E ++++++ D + L + +L +FD +PR+ N
Sbjct: 126 RDYGFDDVHIRGDSELIVKQVRGEWDTNDPELREHRVRVRELLTDFDDWQIEHVPREIND 185
Query: 955 TAHSLA 960
A LA
Sbjct: 186 RADELA 191
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.363 0.165 0.602
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,368,053,023
Number of Sequences: 2540612
Number of extensions: 49054106
Number of successful extensions: 166462
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 166458
Number of HSP's gapped (non-prelim): 10
length of query: 974
length of database: 863,360,394
effective HSP length: 138
effective length of query: 836
effective length of database: 512,755,938
effective search space: 428663964168
effective search space used: 428663964168
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 80 (35.4 bits)
Medicago: description of AC147429.6