BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146865.2 - phase: 0
(107 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE03048.2| OSJNBa0089K21.2 [Oryza sativa (japonica cultivar... 209 1e-53
ref|XP_466432.1| putative small nuclear ribonucleoprotein D1 pol... 206 9e-53
gb|AAF13077.1| putative small nuclear ribonucleoprotein (Sm-D1) ... 204 6e-52
emb|CAB77769.1| small nuclear riboprotein Sm-D1-like protein [Ar... 203 9e-52
ref|XP_214621.2| PREDICTED: similar to small nuclear ribonucleop... 159 2e-38
ref|XP_418799.1| PREDICTED: similar to KIAA0851 protein [Gallus ... 159 2e-38
gb|AAX37003.1| small nuclear ribonucleoprotein D1 polypeptide [s... 159 2e-38
emb|CAE11897.1| small nuclear ribonucleoprotein Sm D1 [Homo sapi... 158 3e-38
gb|AAH71543.1| Snrpd1 protein [Danio rerio] gi|21105451|gb|AAM34... 157 5e-38
gb|AAH74514.1| MGC69276 protein [Xenopus tropicalis] gi|49255946... 157 5e-38
gb|AAT09078.1| small nuclear ribonucleoprotein Sm-D1 [Bigelowiel... 154 5e-37
ref|XP_308555.2| ENSANGP00000009562 [Anopheles gambiae str. PEST... 154 7e-37
ref|XP_624938.1| PREDICTED: similar to CG10753-PA [Apis mellifera] 152 1e-36
ref|XP_642077.1| hypothetical protein DDB0204374 [Dictyostelium ... 152 2e-36
ref|XP_610775.1| PREDICTED: similar to small nuclear ribonucleop... 150 6e-36
emb|CAA15826.1| smd1 [Schizosaccharomyces pombe] gi|19115525|ref... 149 2e-35
gb|EAL30924.1| GA10544-PA [Drosophila pseudoobscura] 149 2e-35
gb|AAF49893.1| CG10753-PA [Drosophila melanogaster] gi|17864386|... 147 5e-35
gb|EAK84372.1| hypothetical protein UM03142.1 [Ustilago maydis 5... 147 8e-35
gb|AAL48981.1| RE39488p [Drosophila melanogaster] 144 5e-34
>emb|CAE03048.2| OSJNBa0089K21.2 [Oryza sativa (japonica cultivar-group)]
gi|50924966|ref|XP_472822.1| OSJNBa0089K21.2 [Oryza
sativa (japonica cultivar-group)]
Length = 114
Score = 209 bits (533), Expect = 1e-53
Identities = 102/107 (95%), Positives = 105/107 (97%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKLNNETV+IELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY
Sbjct: 8 MKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 107
YILPDSLNLETLLVE+ PRVK KKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct: 68 YILPDSLNLETLLVEDTPRVKAKKPTAGKPLGRGRGRGRGRGRGRGR 114
>ref|XP_466432.1| putative small nuclear ribonucleoprotein D1 polypeptide 16kDa;
snRNP core protein D1; Sm-D autoantigen [Oryza sativa
(japonica cultivar-group)] gi|46806276|dbj|BAD17484.1|
putative small nuclear ribonucleoprotein D1 polypeptide
16kDa; snRNP core protein D1; Sm-D autoantigen [Oryza
sativa (japonica cultivar-group)]
Length = 114
Score = 206 bits (525), Expect = 9e-53
Identities = 101/107 (94%), Positives = 103/107 (95%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKLNNETV+IELKNGT VHGTITGVDISMNTHLKTVKLTLKGKNPVT DHLSVRGNNIRY
Sbjct: 8 MKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTFDHLSVRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 107
YILPDSLNLETLLVE+ PRVK KKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct: 68 YILPDSLNLETLLVEDTPRVKAKKPTAGKPLGRGRGRGRGRGRGRGR 114
>gb|AAF13077.1| putative small nuclear ribonucleoprotein (Sm-D1) [Arabidopsis
thaliana] gi|21593161|gb|AAM65110.1| putative small
nuclear ribonucleoprotein Sm-D1 [Arabidopsis thaliana]
gi|21700847|gb|AAM70547.1| AT3g07590/MLP3_4 [Arabidopsis
thaliana] gi|17978995|gb|AAL47458.1| AT3g07590/MLP3_4
[Arabidopsis thaliana] gi|15231485|ref|NP_187416.1|
small nuclear ribonucleoprotein D1, putative / snRNP
core protein D1, putative / Sm protein D1, putative
[Arabidopsis thaliana]
Length = 114
Score = 204 bits (518), Expect = 6e-52
Identities = 97/107 (90%), Positives = 104/107 (96%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKTVK++LKGKNPVTLDHLS+RGNNIRY
Sbjct: 8 MKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 107
YILPDSLNLETLLVE+ PRVKPKKP AGK +GRGRGRGRGRGRGRGR
Sbjct: 68 YILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114
>emb|CAB77769.1| small nuclear riboprotein Sm-D1-like protein [Arabidopsis thaliana]
gi|21536940|gb|AAM61281.1| small nuclear riboprotein
Sm-D1-like protein [Arabidopsis thaliana]
gi|26450421|dbj|BAC42325.1| putative small nuclear
riboprotein Sm-D1 [Arabidopsis thaliana]
gi|15235510|ref|NP_192193.1| small nuclear
ribonucleoprotein D1, putative / snRNP core protein D1,
putative / Sm protein D1, putative [Arabidopsis
thaliana] gi|4263519|gb|AAD15345.1| small nuclear
riboprotein Sm-D1 [Arabidopsis thaliana]
gi|25347713|pir||B85036 small nuclear riboprotein
Sm-D1-like protein [imported] - Arabidopsis thaliana
Length = 116
Score = 203 bits (516), Expect = 9e-52
Identities = 100/107 (93%), Positives = 103/107 (95%), Gaps = 1/107 (0%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKLNNETVSIELKNGTIVHGTITGVD+SMNTHLK VKLTLKGKNPVTLDHLSVRGNNIRY
Sbjct: 8 MKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGK-PLGRGRGRGRGRGRGRG 106
YILPDSLNLETLLVE+ PR+KPKKPTAGK P GRGRGRGRGRGRGRG
Sbjct: 68 YILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRG 114
>ref|XP_214621.2| PREDICTED: similar to small nuclear ribonucleoprotein D1 [Rattus
norvegicus] gi|57089749|ref|XP_537302.1| PREDICTED:
similar to small nuclear ribonucleoprotein D1
polypeptide 16kDa [Canis familiaris]
gi|49457472|emb|CAG47035.1| SNRPD1 [Homo sapiens]
gi|61810371|ref|XP_585620.1| PREDICTED: similar to small
nuclear ribonucleoprotein D1 [Bos taurus]
gi|67970653|dbj|BAE01669.1| unnamed protein product
[Macaca fascicularis] gi|705366|gb|AAA85339.1| small
nuclear ribonucleoprotein [Homo sapiens]
gi|1256741|gb|AAA96493.1| Sm-D autoantigen [Mus
musculus] gi|48734707|gb|AAH72427.1| Small nuclear
ribonucleoprotein D1 polypeptide 16kDa [Homo sapiens]
gi|19354162|gb|AAH24875.1| Small nuclear
ribonucleoprotein D1 [Mus musculus]
gi|12804599|gb|AAH01721.1| Small nuclear
ribonucleoprotein D1 polypeptide 16kDa [Homo sapiens]
gi|51338665|sp|P62314|SMD1_HUMAN Small nuclear
ribonucleoprotein Sm D1 (snRNP core protein D1) (Sm-D1)
(Sm-D autoantigen) gi|60413325|sp|P62315|SMD1_MOUSE
Small nuclear ribonucleoprotein Sm D1 (snRNP core
protein D1) (Sm-D1) (Sm-D autoantigen)
gi|6678055|ref|NP_033252.1| small nuclear
ribonucleoprotein D1 [Mus musculus]
gi|5902102|ref|NP_008869.1| small nuclear
ribonucleoprotein D1 polypeptide 16kDa [Homo sapiens]
gi|6980598|pdb|1B34|A Chain A, Crystal Structure Of The
D1d2 Sub-Complex From The Human Snrnp Core Domain
gi|338265|gb|AAA36620.1| small nuclear riboprotein Sm-D
gi|12850214|dbj|BAB28635.1| unnamed protein product [Mus
musculus] gi|12847588|dbj|BAB27628.1| unnamed protein
product [Mus musculus] gi|12841366|dbj|BAB25178.1|
unnamed protein product [Mus musculus]
gi|12838127|dbj|BAB24092.1| unnamed protein product [Mus
musculus]
Length = 119
Score = 159 bits (402), Expect = 2e-38
Identities = 79/107 (73%), Positives = 91/107 (84%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY
Sbjct: 8 MKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 107
+ILPDSL L+TLLV+ P+VK KK A GRGRGRGRGRGRGRGR
Sbjct: 68 FILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114
>ref|XP_418799.1| PREDICTED: similar to KIAA0851 protein [Gallus gallus]
Length = 766
Score = 159 bits (402), Expect = 2e-38
Identities = 79/107 (73%), Positives = 91/107 (84%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY
Sbjct: 655 MKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRY 714
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 107
+ILPDSL L+TLLV+ P+VK KK A GRGRGRGRGRGRGRGR
Sbjct: 715 FILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 761
>gb|AAX37003.1| small nuclear ribonucleoprotein D1 polypeptide [synthetic
construct]
Length = 120
Score = 159 bits (402), Expect = 2e-38
Identities = 79/107 (73%), Positives = 91/107 (84%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY
Sbjct: 8 MKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 107
+ILPDSL L+TLLV+ P+VK KK A GRGRGRGRGRGRGRGR
Sbjct: 68 FILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114
>emb|CAE11897.1| small nuclear ribonucleoprotein Sm D1 [Homo sapiens]
Length = 119
Score = 158 bits (399), Expect = 3e-38
Identities = 79/107 (73%), Positives = 90/107 (83%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL++ETV IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY
Sbjct: 8 MKLSHETVIIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 107
+ILPDSL L+TLLV+ P+VK KK A GRGRGRGRGRGRGRGR
Sbjct: 68 FILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114
>gb|AAH71543.1| Snrpd1 protein [Danio rerio] gi|21105451|gb|AAM34669.1| small
nuclear ribonucleoprotein D1 [Danio rerio]
gi|27545253|ref|NP_775359.1| small nuclear
ribonucleoprotein D1 polypeptide [Danio rerio]
Length = 119
Score = 157 bits (398), Expect = 5e-38
Identities = 78/107 (72%), Positives = 90/107 (83%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + P L+ LS+RGNNIRY
Sbjct: 8 MKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 107
+ILPDSL L+TLLV+ P+VK KK A GRGRGRGRGRGRGRGR
Sbjct: 68 FILPDSLPLDTLLVDIEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114
>gb|AAH74514.1| MGC69276 protein [Xenopus tropicalis] gi|49255946|gb|AAH71069.1|
MGC78968 protein [Xenopus laevis]
gi|52345462|ref|NP_001004780.1| MGC69276 protein
[Xenopus tropicalis]
Length = 119
Score = 157 bits (398), Expect = 5e-38
Identities = 77/107 (71%), Positives = 91/107 (84%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL++ETV++ELKNGT VHGTITGVD+SMNTHLK VK+T+K + PV L+ LS+RGNNIRY
Sbjct: 8 MKLSHETVTVELKNGTQVHGTITGVDVSMNTHLKAVKMTVKNREPVQLETLSIRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 107
+ILPDSL L+TLLV+ P+VK KK A GRGRGRGRGRGRGRGR
Sbjct: 68 FILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114
>gb|AAT09078.1| small nuclear ribonucleoprotein Sm-D1 [Bigelowiella natans]
Length = 120
Score = 154 bits (389), Expect = 5e-37
Identities = 78/110 (70%), Positives = 91/110 (81%), Gaps = 3/110 (2%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
M+LNNETV++ELKNGT+V GTI+GVD+SMNTHLK VK+TLKGKNPV LD LS+RGNNIRY
Sbjct: 8 MRLNNETVTVELKNGTVVQGTISGVDMSMNTHLKIVKMTLKGKNPVHLDTLSIRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPR--VKPKKPTAGKPLGRGRG-RGRGRGRGRGR 107
+ILPDSLNL+ LLVEE + + G+ GRGRG RGRGRGRGRGR
Sbjct: 68 FILPDSLNLDALLVEEVKKKTTSTRSGRGGRGRGRGRGRRGRGRGRGRGR 117
>ref|XP_308555.2| ENSANGP00000009562 [Anopheles gambiae str. PEST]
gi|55245636|gb|EAA04383.3| ENSANGP00000009562 [Anopheles
gambiae str. PEST]
Length = 126
Score = 154 bits (388), Expect = 7e-37
Identities = 79/118 (66%), Positives = 94/118 (78%), Gaps = 11/118 (9%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL++ETV+IELKNGT VHGTITGVD++MNTHLK VK+T+K ++PVTLD LS+RGNNIRY
Sbjct: 8 MKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPVTLDSLSIRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTA--GKPLGRGRGR---------GRGRGRGRGR 107
YILPDSL LETLL+++AP+ + KK A G P GRGRG GRG GRGRGR
Sbjct: 68 YILPDSLPLETLLIDDAPKTRAKKREANRGGPRGRGRGTRGGRGGPRGGRGGGRGRGR 125
>ref|XP_624938.1| PREDICTED: similar to CG10753-PA [Apis mellifera]
Length = 123
Score = 152 bits (385), Expect = 1e-36
Identities = 77/115 (66%), Positives = 92/115 (79%), Gaps = 8/115 (6%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL++ETV+IELKNGT VHGTITGVD++MNTHLKTVK+T+K ++PV LD LS+RGNNIRY
Sbjct: 8 MKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKTVKMTIKNRDPVQLDTLSLRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRG--------RGRGRGRGR 107
YILPDSL LETLL+++ P+ K KK A + RGRGRG GRGRGRGR
Sbjct: 68 YILPDSLPLETLLIDDTPKAKAKKKEAARGAVRGRGRGGRGTRGGRGGRGRGRGR 122
>ref|XP_642077.1| hypothetical protein DDB0204374 [Dictyostelium discoideum]
gi|60470206|gb|EAL68186.1| hypothetical protein
DDB0204374 [Dictyostelium discoideum]
Length = 131
Score = 152 bits (384), Expect = 2e-36
Identities = 79/110 (71%), Positives = 91/110 (81%), Gaps = 5/110 (4%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL+NETV+IELKNGTIV G++ GVD+SMNTHLKTVKLTLKGKNPV LD LS+RGNNIRY
Sbjct: 8 MKLHNETVTIELKNGTIVQGSVAGVDVSMNTHLKTVKLTLKGKNPVNLDTLSIRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTA----GKPLGRGRGRGRGRGRGRG 106
+ILP+SLNL TLLV++ P+VK KK T+ KP RG GRG GRG RG
Sbjct: 68 FILPESLNLGTLLVDDTPKVKAKKTTSKPGESKPSMRG-GRGGGRGGARG 116
>ref|XP_610775.1| PREDICTED: similar to small nuclear ribonucleoprotein D1 [Bos
taurus]
Length = 119
Score = 150 bits (380), Expect = 6e-36
Identities = 75/108 (69%), Positives = 91/108 (83%), Gaps = 2/108 (1%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
+KL++ETV+IELKNGT VHG ITGVD+SMNTHL+ VK+TLK + PV L+ LS+RGN+IRY
Sbjct: 8 IKLSHETVTIELKNGTQVHGIITGVDVSMNTHLRAVKMTLKNREPVQLEPLSIRGNSIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKK--PTAGKPLGRGRGRGRGRGRGRG 106
+ILPDSL L+TLLV+E P+VK KK AG+ GRGRG GRGRGRGRG
Sbjct: 68 FILPDSLPLDTLLVDEEPKVKSKKREAVAGRGXGRGRGCGRGRGRGRG 115
>emb|CAA15826.1| smd1 [Schizosaccharomyces pombe] gi|19115525|ref|NP_594613.1|
hypothetical protein SPAC27D7.07c [Schizosaccharomyces
pombe 972h-] gi|12230564|sp|O42661|SMD1_SCHPO Probable
small nuclear ribonucleoprotein Sm D1 (snRNP core
protein D1) (Sm-D1)
Length = 117
Score = 149 bits (375), Expect = 2e-35
Identities = 76/108 (70%), Positives = 90/108 (82%), Gaps = 5/108 (4%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL NETVSIELKNGTIVHGTIT VD+ MNTHLK VK+T+KG+ PV ++ LS+RGNNIRY
Sbjct: 8 MKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRG-RGRGR 107
YILPDSL L+TLL++++ + K KK K + RGRGRGRGRG RGRGR
Sbjct: 68 YILPDSLPLDTLLIDDSTKPKQKK----KEVVRGRGRGRGRGTRGRGR 111
>gb|EAL30924.1| GA10544-PA [Drosophila pseudoobscura]
Length = 120
Score = 149 bits (375), Expect = 2e-35
Identities = 72/113 (63%), Positives = 93/113 (81%), Gaps = 7/113 (6%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T+K ++PV L+ LS+RGNNIRY
Sbjct: 4 MKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLESLSIRGNNIRY 63
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRG-------RGRGRGRG 106
+ILPDSL LETLL+++ P+ K KK +G+ RGRGRG RGRGRGRG
Sbjct: 64 FILPDSLPLETLLIDDTPKSKTKKKDSGRVGNRGRGRGARGRGGPRGRGRGRG 116
>gb|AAF49893.1| CG10753-PA [Drosophila melanogaster] gi|17864386|ref|NP_524774.1|
CG10753-PA [Drosophila melanogaster]
gi|33112453|sp|Q9VU02|SMD1_DROME Probable small nuclear
ribonucleoprotein Sm D1 (snRNP core protein D1) (Sm-D1)
Length = 124
Score = 147 bits (372), Expect = 5e-35
Identities = 73/110 (66%), Positives = 94/110 (85%), Gaps = 3/110 (2%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T+K ++PV L+ LS+RGNNIRY
Sbjct: 8 MKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRG-RGRG--RGRGR 107
+ILPDSL LETLL+++ P+ K KK +G+ RGRGRG RGRG RGRGR
Sbjct: 68 FILPDSLPLETLLIDDTPKSKTKKKDSGRVGNRGRGRGARGRGGPRGRGR 117
>gb|EAK84372.1| hypothetical protein UM03142.1 [Ustilago maydis 521]
gi|49073013|ref|XP_400757.1| hypothetical protein
UM03142.1 [Ustilago maydis 521]
Length = 192
Score = 147 bits (370), Expect = 8e-35
Identities = 77/118 (65%), Positives = 94/118 (79%), Gaps = 11/118 (9%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKLNNE+V+IELKNGT+VHGT+TGVDI MNTHLKTVK+T++G+ VTLD LS+RGNNIRY
Sbjct: 75 MKLNNESVTIELKNGTVVHGTVTGVDIQMNTHLKTVKMTVRGRPAVTLDTLSIRGNNIRY 134
Query: 61 YILPDSLNLETLLVEEAPRVKPKK--PTA-----GKPLGRGRGRGRG----RGRGRGR 107
+ILPD+L L+ LLV++AP+ K K+ P A G + RGRGRGRG GRGRGR
Sbjct: 135 WILPDALPLDMLLVDDAPKPKGKRKDPVARGARGGASMDRGRGRGRGGGMRGGRGRGR 192
>gb|AAL48981.1| RE39488p [Drosophila melanogaster]
Length = 124
Score = 144 bits (363), Expect = 5e-34
Identities = 72/110 (65%), Positives = 93/110 (84%), Gaps = 3/110 (2%)
Query: 1 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
MKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T+K ++ V L+ LS+RGNNIRY
Sbjct: 8 MKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDHVHLETLSIRGNNIRY 67
Query: 61 YILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRG-RGRG--RGRGR 107
+ILPDSL LETLL+++ P+ K KK +G+ RGRGRG RGRG RGRGR
Sbjct: 68 FILPDSLPLETLLIDDTPKSKTKKKDSGRVGNRGRGRGARGRGGPRGRGR 117
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.138 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197,135,870
Number of Sequences: 2540612
Number of extensions: 8280815
Number of successful extensions: 52936
Number of sequences better than 10.0: 736
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 241
Number of HSP's that attempted gapping in prelim test: 47601
Number of HSP's gapped (non-prelim): 2692
length of query: 107
length of database: 863,360,394
effective HSP length: 83
effective length of query: 24
effective length of database: 652,489,598
effective search space: 15659750352
effective search space used: 15659750352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146865.2