BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146330.2 + phase: 0
(223 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC35983.1| proteasome beta subunit [Petunia x hybrida] gi|17... 417 e-115
emb|CAA56201.1| proteasome subunit [Arabidopsis thaliana] gi|732... 400 e-110
emb|CAA47753.1| proteosome subunit [Arabidopsis thaliana] 400 e-110
dbj|BAA28276.1| beta 6 subunit of 20S proteasome [Oryza sativa (... 366 e-100
ref|XP_483459.1| putative proteasome subunit beta type 1 [Oryza ... 363 1e-99
emb|CAC43327.1| putative beta6 proteasome subunit [Nicotiana tab... 357 1e-97
gb|AAO52127.1| similar to Petunia hybrida (Petunia). Proteasome ... 226 3e-58
ref|XP_395163.2| PREDICTED: similar to GA17955-PA [Apis mellifera] 215 8e-55
ref|XP_653346.1| proteasome beta subunit, putative [Entamoeba hi... 211 9e-54
gb|AAR26544.1| proteasome subunit beta-type [Gallus gallus] gi|5... 202 7e-51
emb|CAG11005.1| unnamed protein product [Tetraodon nigroviridis] 202 7e-51
dbj|BAA95592.1| 20S proteasome beta 6 subunit [Carassius auratus... 201 2e-50
dbj|BAA95591.1| 20S proteasome beta 6 subunit [Carassius auratus... 201 2e-50
gb|AAH85580.1| Proteasome (prosome, macropain) subunit, beta typ... 199 4e-50
ref|XP_532275.1| PREDICTED: similar to Proteasome (prosome, macr... 199 5e-50
dbj|BAD96913.1| proteasome beta 1 subunit variant [Homo sapiens] 198 8e-50
emb|CAA20287.1| proteasome (prosome, macropain) subunit, beta ty... 198 1e-49
gb|AAV38524.1| proteasome (prosome, macropain) subunit, beta typ... 198 1e-49
gb|AAH00508.1| Proteasome beta 1 subunit [Homo sapiens] 198 1e-49
pdb|1IRU|1 Chain 1, Crystal Structure Of The Mammalian 20s Prote... 198 1e-49
>gb|AAC35983.1| proteasome beta subunit [Petunia x hybrida]
gi|17380185|sp|O82531|PSB1_PETHY Proteasome subunit beta
type 1 (20S proteasome alpha subunit F) (20S proteasome
subunit beta-6)
Length = 223
Score = 417 bits (1071), Expect = e-115
Identities = 203/223 (91%), Positives = 214/223 (95%)
Query: 1 MTKQHANWSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMAS 60
MTKQ ANWSPYDNNGG+CVA+AG+DYCVIAADTRMSTGYNILTRDYSKI LA+KCVMAS
Sbjct: 1 MTKQQANWSPYDNNGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMAS 60
Query: 61 SGFQADVKALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLD 120
SGFQADV+ALQKVL++RHL YQHQHNKQMSCPAM QLLSNTLYYKRFFPYYSFNVLGGLD
Sbjct: 61 SGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD 120
Query: 121 SEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAE 180
SEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAE
Sbjct: 121 SEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAE 180
Query: 181 AVDLVKTVFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
A+DLVKT FASATERDIYTGD++EIVILNA GI RE M+LRKD
Sbjct: 181 AIDLVKTCFASATERDIYTGDRLEIVILNASGIRREEMELRKD 223
>emb|CAA56201.1| proteasome subunit [Arabidopsis thaliana]
gi|7329692|emb|CAB82686.1| proteasome component C5
[Arabidopsis thaliana] gi|21554745|gb|AAM63678.1|
proteasome component C5 [Arabidopsis thaliana]
gi|20148485|gb|AAM10133.1| proteasome component C5
[Arabidopsis thaliana] gi|17065428|gb|AAL32868.1|
proteasome component C5 [Arabidopsis thaliana]
gi|3421120|gb|AAC32073.1| 20S proteasome beta subunit
PBF1 [Arabidopsis thaliana] gi|15232965|ref|NP_191641.1|
20S proteasome beta subunit F1 (PBF1) [Arabidopsis
thaliana] gi|11358715|pir||T47893 proteasome
endopeptidase complex (EC 3.4.25.1) chain PBF1
[imported] - Arabidopsis thaliana
gi|12643281|sp|P42742|PSB1_ARATH Proteasome subunit beta
type 1 (20S proteasome alpha subunit F) (Proteasome
component C5) (TAS-F22/FAFP98)
Length = 223
Score = 400 bits (1029), Expect = e-110
Identities = 195/223 (87%), Positives = 209/223 (93%)
Query: 1 MTKQHANWSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMAS 60
MTKQHANWSPYDNNGG+CVAIAGSDYCVIAADTRMSTGY+IL+RDYSKI LA++ V++S
Sbjct: 1 MTKQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSS 60
Query: 61 SGFQADVKALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLD 120
SGFQADVKALQKVL +RHL YQHQHNKQMSCPAMAQLLSNTLY+KRFFPYY+FNVLGGLD
Sbjct: 61 SGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD 120
Query: 121 SEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAE 180
EGKGCVFTYDAVGSYERVGY +QGSGSTLIMPFLDNQLKSPSPLLLP QD+ TPLSEAE
Sbjct: 121 EEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAE 180
Query: 181 AVDLVKTVFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
AVDLVKTVFASATERDIYTGDK+EI+IL A GI E MDLRKD
Sbjct: 181 AVDLVKTVFASATERDIYTGDKLEIMILKADGIKTELMDLRKD 223
>emb|CAA47753.1| proteosome subunit [Arabidopsis thaliana]
Length = 230
Score = 400 bits (1029), Expect = e-110
Identities = 195/223 (87%), Positives = 209/223 (93%)
Query: 1 MTKQHANWSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMAS 60
MTKQHANWSPYDNNGG+CVAIAGSDYCVIAADTRMSTGY+IL+RDYSKI LA++ V++S
Sbjct: 8 MTKQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSS 67
Query: 61 SGFQADVKALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLD 120
SGFQADVKALQKVL +RHL YQHQHNKQMSCPAMAQLLSNTLY+KRFFPYY+FNVLGGLD
Sbjct: 68 SGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD 127
Query: 121 SEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAE 180
EGKGCVFTYDAVGSYERVGY +QGSGSTLIMPFLDNQLKSPSPLLLP QD+ TPLSEAE
Sbjct: 128 EEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAE 187
Query: 181 AVDLVKTVFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
AVDLVKTVFASATERDIYTGDK+EI+IL A GI E MDLRKD
Sbjct: 188 AVDLVKTVFASATERDIYTGDKLEIMILKADGIKTELMDLRKD 230
>dbj|BAA28276.1| beta 6 subunit of 20S proteasome [Oryza sativa (japonica
cultivar-group)] gi|17380182|sp|O64464|PSB1_ORYSA
Proteasome subunit beta type 1 (20S proteasome alpha
subunit F) (20S proteasome subunit beta-6)
Length = 221
Score = 366 bits (940), Expect = e-100
Identities = 175/213 (82%), Positives = 195/213 (91%)
Query: 11 YDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQADVKAL 70
Y+NNGG+CVAIAG+DYCV+AADTR+S GYNILTRD+SKI LA+KC +ASSGFQ D+KAL
Sbjct: 9 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKAL 68
Query: 71 QKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTY 130
K L+AR L YQHQHNK+MSCPAMAQLLSNTLYYKRFFPYY+FNVLGGLDSEGKGCVFTY
Sbjct: 69 HKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTY 128
Query: 131 DAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTVFA 190
DAVGSYER GYS+QG+GS LIMP LDNQLKSPSPLLLPA+DAVTPLSE EAVDLVK VFA
Sbjct: 129 DAVGSYERTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFA 188
Query: 191 SATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
SATERDIYTGDK+EIV++N G RE++DLRKD
Sbjct: 189 SATERDIYTGDKLEIVVINKAGTKREYIDLRKD 221
>ref|XP_483459.1| putative proteasome subunit beta type 1 [Oryza sativa (japonica
cultivar-group)] gi|42407968|dbj|BAD09106.1| putative
proteasome subunit beta type 1 [Oryza sativa (japonica
cultivar-group)]
Length = 219
Score = 363 bits (933), Expect = 1e-99
Identities = 170/218 (77%), Positives = 202/218 (91%)
Query: 6 ANWSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQA 65
A + Y+NNGG+CVA+AG+DYCV+AADTR+S GY+IL+RD SKI+HLA+KCV+ASSGFQ
Sbjct: 2 ARFEVYENNGGTCVAVAGADYCVVAADTRLSVGYSILSRDSSKIAHLADKCVLASSGFQG 61
Query: 66 DVKALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEGKG 125
DVKALQ+ L+A+ L Y+H HNK+MSCPAMAQLLSNTLYYKRFFPYY+FNVLGGLDSEGKG
Sbjct: 62 DVKALQRNLTAKELLYEHNHNKKMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKG 121
Query: 126 CVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLV 185
CVFTYDAVGSYER GYS+QG+G+ L+MP LDNQLKSPSPLLLPA+DAVTPLS+++AVDLV
Sbjct: 122 CVFTYDAVGSYERTGYSAQGTGAALMMPVLDNQLKSPSPLLLPARDAVTPLSQSDAVDLV 181
Query: 186 KTVFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
K VFASATERDIYTGDK+EIV++N+ G HREF++LRKD
Sbjct: 182 KDVFASATERDIYTGDKLEIVVINSAGSHREFIELRKD 219
>emb|CAC43327.1| putative beta6 proteasome subunit [Nicotiana tabacum]
Length = 192
Score = 357 bits (916), Expect = 1e-97
Identities = 173/192 (90%), Positives = 184/192 (95%)
Query: 9 SPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQADVK 68
SPYDNNGG+CVA+AG+DYCVIAADTRMS+GYNILTRDYSKI LA+KCV+ASSGFQADVK
Sbjct: 1 SPYDNNGGTCVAVAGADYCVIAADTRMSSGYNILTRDYSKIIKLADKCVLASSGFQADVK 60
Query: 69 ALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVF 128
ALQKVL+ARHL YQHQHNKQMSCPAM QLLSNTLYYKRFFPYYSFNVLGGLD+EGKGCVF
Sbjct: 61 ALQKVLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVF 120
Query: 129 TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTV 188
TYDAVGSY RVGYSSQGSGSTLIMPFLD QLKSPSPLLLPA+DAVTPLSE+EA+DLVKT
Sbjct: 121 TYDAVGSYGRVGYSSQGSGSTLIMPFLDYQLKSPSPLLLPAKDAVTPLSESEAIDLVKTC 180
Query: 189 FASATERDIYTG 200
F SATERDIYTG
Sbjct: 181 FVSATERDIYTG 192
>gb|AAO52127.1| similar to Petunia hybrida (Petunia). Proteasome subunit beta type
1 (EC 3.4.99.46) (20S proteasome alpha subunit F) (20S
proteasome subunit beta-6) [Dictyostelium discoideum]
gi|66823073|ref|XP_644891.1| hypothetical protein
DDB0217063 [Dictyostelium discoideum]
gi|60473174|gb|EAL71122.1| hypothetical protein
DDB0217063 [Dictyostelium discoideum]
Length = 236
Score = 226 bits (577), Expect = 3e-58
Identities = 115/220 (52%), Positives = 154/220 (69%), Gaps = 4/220 (1%)
Query: 5 HANWSPYDNNGGSCVAIAGSDYCVIAADTRMSTG-YNILTRDYSKISHLAEKCVMASSGF 63
H + Y +NGG+ +A+AG DYCVIA DTRMS G Y I TR Y+KI L +KCV+A+SG
Sbjct: 20 HGRFEAYVDNGGTVLAVAGKDYCVIAGDTRMSDGGYGIQTRKYTKIFQLTKKCVLATSGM 79
Query: 64 QADVKALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEG 123
QAD ALQK L + +++ +H K MS PA+AQ LSNTLYYKRFFPYY+FN++ G+D +G
Sbjct: 80 QADTIALQKRLKSMLESFEKEHGKPMSTPAIAQFLSNTLYYKRFFPYYTFNLVAGVDEQG 139
Query: 124 KGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVD 183
+G ++TYDAVGS+ERV YSSQGSG+ L++P LDNQ+ + ++ V S + V
Sbjct: 140 EGWIWTYDAVGSHERVKYSSQGSGNQLVIPLLDNQVAKFNQQIVEGNKDV---SCEQVVS 196
Query: 184 LVKTVFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
VK SA ERDIYTGD +IV+++ G+H E +L+ D
Sbjct: 197 FVKDSITSAGERDIYTGDFADIVVVDKNGVHWEKFELKLD 236
>ref|XP_395163.2| PREDICTED: similar to GA17955-PA [Apis mellifera]
Length = 236
Score = 215 bits (547), Expect = 8e-55
Identities = 108/219 (49%), Positives = 145/219 (65%), Gaps = 8/219 (3%)
Query: 7 NWSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQAD 66
N++PY +NGGS +A+AG ++CVIAADTR+STG++I TR+ K+ L+ K V+ SG D
Sbjct: 24 NFNPYADNGGSVIALAGDNFCVIAADTRLSTGFSIYTREQQKLFPLSSKTVLGCSGCWCD 83
Query: 67 VKALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGC 126
L ++LSAR Y+H+H K+M PA+AQ+LS LYYKRFFPYY N+LGGLD GKGC
Sbjct: 84 TLTLTRILSARMQMYEHEHQKEMPTPAVAQMLSTMLYYKRFFPYYVSNILGGLDENGKGC 143
Query: 127 VFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV--TPLSEAEAVDL 184
V++YD +G E Y + GS L+ P LDNQ+ + Q+ V PL++ AV +
Sbjct: 144 VYSYDPIGHCEITKYRAGGSAGALLQPLLDNQIGYKN------QEGVESVPLTQERAVAI 197
Query: 185 VKTVFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
+K VF SA ERDIYTGD + I I+ + GI LRKD
Sbjct: 198 IKDVFTSAAERDIYTGDSIFIKIITSDGIQNFNFALRKD 236
>ref|XP_653346.1| proteasome beta subunit, putative [Entamoeba histolytica HM-1:IMSS]
gi|56470287|gb|EAL47959.1| proteasome beta subunit,
putative [Entamoeba histolytica HM-1:IMSS]
Length = 226
Score = 211 bits (538), Expect = 9e-54
Identities = 109/221 (49%), Positives = 142/221 (63%), Gaps = 10/221 (4%)
Query: 3 KQHANWSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSG 62
K WSPY++N G+CV I G D+ VIA+DTRMS Y ILTR+ SKI L KCV SG
Sbjct: 16 KNKDQWSPYEDNCGTCVVIKGEDFVVIASDTRMSRDYMILTRNDSKIYPLTSKCVFTGSG 75
Query: 63 FQADVKALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSE 122
+AD+K L + A Y++++ K+MS ++AQ+LSNTLY RFFPYYSF++L G++S+
Sbjct: 76 MRADIKELTDQIKAHIKNYKYENGKEMSTESVAQVLSNTLYSHRFFPYYSFSLLAGINSK 135
Query: 123 GKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAV 182
GK + YDAVGS+E YS GSG L P LD+ LK D PL E EA+
Sbjct: 136 GKAVTYNYDAVGSFEERKYSCSGSGEELAYPLLDSLLK----------DRTEPLGEQEAI 185
Query: 183 DLVKTVFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
++ + V SA ERDI+TGD VEIVILN+ GI +E + D
Sbjct: 186 NIARDVMTSACERDIHTGDNVEIVILNSNGIRKEVHFMASD 226
>gb|AAR26544.1| proteasome subunit beta-type [Gallus gallus]
gi|56118302|ref|NP_001007906.1| proteasome subunit
beta-type [Gallus gallus]
Length = 237
Score = 202 bits (513), Expect = 7e-51
Identities = 100/216 (46%), Positives = 142/216 (65%), Gaps = 4/216 (1%)
Query: 8 WSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQADV 67
+SPY NGG+ +AIAG D+C++A+DTR+S GY I +RD K L E+ V+ SGF D
Sbjct: 26 FSPYTFNGGTVLAIAGEDFCIVASDTRLSEGYAIHSRDSPKCYRLTEQTVIGCSGFHGDC 85
Query: 68 KALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCV 127
L K++ AR Y+H +NK M+ A+A +LS LY +RFFPYY +N++GGLD EGKG V
Sbjct: 86 LTLTKIIEARLKMYKHSNNKTMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 145
Query: 128 FTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKT 187
+++D VGSY+R + + GS S ++ P LDNQ+ + + PL+ +A+ LVK
Sbjct: 146 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQIGFKNMQNVEH----VPLTLEKALQLVKD 201
Query: 188 VFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
VF SA ERD+YTGD ++I ++ GI E + LRKD
Sbjct: 202 VFISAAERDVYTGDALKICVVTKDGIKEETIQLRKD 237
>emb|CAG11005.1| unnamed protein product [Tetraodon nigroviridis]
Length = 237
Score = 202 bits (513), Expect = 7e-51
Identities = 101/218 (46%), Positives = 142/218 (64%), Gaps = 8/218 (3%)
Query: 8 WSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQADV 67
+SPY NGG+ +A+AG D+ ++A+DTR+S GY+I +RD K L + V+ SGF D
Sbjct: 26 FSPYTFNGGTVLAVAGDDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDC 85
Query: 68 KALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCV 127
L K++ AR Y+H +NK MS A+A +LS LY +RFFPYY +N++GGLD EGKG V
Sbjct: 86 LTLTKIIDARLKMYKHSNNKTMSSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGKGAV 145
Query: 128 FTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV--TPLSEAEAVDLV 185
+++D VGSY+R Y + GS S ++ P LDNQ+ + D V PL++ +A+ LV
Sbjct: 146 YSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN------MDGVQQVPLTQEKAIQLV 199
Query: 186 KTVFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
K VF SA ERD+YTGD + I I+ GI + + LRKD
Sbjct: 200 KDVFISAAERDVYTGDALHICIITKEGIQEQTVQLRKD 237
>dbj|BAA95592.1| 20S proteasome beta 6 subunit [Carassius auratus]
gi|17380206|sp|Q9IB83|PS12_CARAU Proteasome subunit beta
type 1-B (20S proteasome beta 6 subunit B) (B6-B)
Length = 237
Score = 201 bits (510), Expect = 2e-50
Identities = 100/216 (46%), Positives = 141/216 (64%), Gaps = 4/216 (1%)
Query: 8 WSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQADV 67
+SPY NGG+ +A+AG D+ ++A+DTR+S GY+I +RD K L + V+ SGF D
Sbjct: 26 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDC 85
Query: 68 KALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCV 127
L K++ AR Y+H +NK M+ A+A +LS LY +RFFPYY +N++GGLD EG+G V
Sbjct: 86 LTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAV 145
Query: 128 FTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKT 187
+++D VGSY+R Y + GS S ++ P LDNQ+ + PLS+ +AV LVK
Sbjct: 146 YSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVKD 201
Query: 188 VFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
VF SA ERD+YTGD ++I I+ GI E + LRKD
Sbjct: 202 VFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 237
>dbj|BAA95591.1| 20S proteasome beta 6 subunit [Carassius auratus]
gi|17380207|sp|Q9IB84|PS11_CARAU Proteasome subunit beta
type 1-A (20S proteasome beta 6 subunit A) (B6-A)
Length = 238
Score = 201 bits (510), Expect = 2e-50
Identities = 100/216 (46%), Positives = 141/216 (64%), Gaps = 4/216 (1%)
Query: 8 WSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQADV 67
+SPY NGG+ +A+AG D+ ++A+DTR+S GY+I +RD K L + V+ SGF D
Sbjct: 27 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDC 86
Query: 68 KALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCV 127
L K++ AR Y+H +NK M+ A+A +LS LY +RFFPYY +N++GGLD EG+G V
Sbjct: 87 LTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAV 146
Query: 128 FTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKT 187
+++D VGSY+R Y + GS S ++ P LDNQ+ + PLS+ +AV LVK
Sbjct: 147 YSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVKD 202
Query: 188 VFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
VF SA ERD+YTGD ++I I+ GI E + LRKD
Sbjct: 203 VFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 238
>gb|AAH85580.1| Proteasome (prosome, macropain) subunit, beta type, 1 [Danio rerio]
gi|49619079|gb|AAT68124.1| proteasome beta-subunit C5
[Danio rerio] gi|51468069|ref|NP_001003889.1| proteasome
(prosome, macropain) subunit, beta type, 1 [Danio rerio]
Length = 237
Score = 199 bits (507), Expect = 4e-50
Identities = 98/216 (45%), Positives = 142/216 (65%), Gaps = 4/216 (1%)
Query: 8 WSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQADV 67
+SPY NGG+ +A+AG D+ ++A+DTR+S GY+I +RD K L + V+ SGF D
Sbjct: 26 FSPYAFNGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVLGCSGFHGDC 85
Query: 68 KALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCV 127
L K++ AR Y+H +NK M+ A+A +LS LY +RFFPYY +N++GGLD EG+G V
Sbjct: 86 LTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAV 145
Query: 128 FTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKT 187
+++D VGSY+R Y + GS S ++ P LDNQ+ + PL++ +AV LVK
Sbjct: 146 YSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEHVPLTQEKAVQLVKD 201
Query: 188 VFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
VF SA ERD+YTGD +++ I++ GI E + LRKD
Sbjct: 202 VFISAAERDVYTGDALKVCIVSKEGIKEEIVPLRKD 237
>ref|XP_532275.1| PREDICTED: similar to Proteasome (prosome, macropain) subunit, beta
type 1 [Canis familiaris]
Length = 520
Score = 199 bits (506), Expect = 5e-50
Identities = 102/220 (46%), Positives = 141/220 (63%), Gaps = 4/220 (1%)
Query: 4 QHANWSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGF 63
Q +SPY NGG+ +AIAG D+ ++A+DTR+S G++I TRD K L +K V+ SGF
Sbjct: 305 QQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGF 364
Query: 64 QADVKALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEG 123
D L K++ AR Y+H +NK M+ A+A +LS LY +RFFPYY +N++GGLD EG
Sbjct: 365 HGDCLTLTKIIEARLKMYKHSNNKTMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEG 424
Query: 124 KGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVD 183
KG V+++D VGSY+R + + GS S ++ P LDNQ+ + + PLS A+
Sbjct: 425 KGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMR 480
Query: 184 LVKTVFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
LVK VF SA ERD+YTGD + I I+ GI E + LRKD
Sbjct: 481 LVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 520
>dbj|BAD96913.1| proteasome beta 1 subunit variant [Homo sapiens]
Length = 241
Score = 198 bits (504), Expect = 8e-50
Identities = 101/216 (46%), Positives = 140/216 (64%), Gaps = 4/216 (1%)
Query: 8 WSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQADV 67
+SPY NGG+ +AIAG D+ ++A+DTR+S G++I TRD K L +K V+ SGF D
Sbjct: 30 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYRLTDKTVIGCSGFHGDC 89
Query: 68 KALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCV 127
L K++ AR Y+H +NK M+ A+A +LS LY +RFFPYY +N++GGLD EGKG V
Sbjct: 90 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 149
Query: 128 FTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKT 187
+++D VGSY+R + + GS S ++ P LDNQ+ + + PLS A+ LVK
Sbjct: 150 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKD 205
Query: 188 VFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
VF SA ERD+YTGD + I I+ GI E + LRKD
Sbjct: 206 VFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 241
>emb|CAA20287.1| proteasome (prosome, macropain) subunit, beta type, 1 [Homo
sapiens] gi|55666609|ref|XP_528628.1| PREDICTED: similar
to Proteasome subunit beta type 1 (Proteasome component
C5) (Macropain subunit C5) (Multicatalytic endopeptidase
complex subunit C5) (Proteasome gamma chain) [Pan
troglodytes] gi|54696306|gb|AAV38525.1| proteasome
(prosome, macropain) subunit, beta type, 1 [Homo
sapiens] gi|61357229|gb|AAX41355.1| proteasome subunit
beta type 1 [synthetic construct]
gi|18088777|gb|AAH20807.1| Proteasome beta 1 subunit
[Homo sapiens] gi|220026|dbj|BAA00658.1| proteasome
subunit C5 [Homo sapiens] gi|130853|sp|P20618|PSB1_HUMAN
Proteasome subunit beta type 1 (Proteasome component C5)
(Macropain subunit C5) (Multicatalytic endopeptidase
complex subunit C5) (Proteasome gamma chain)
gi|4506193|ref|NP_002784.1| proteasome beta 1 subunit
[Homo sapiens]
Length = 241
Score = 198 bits (503), Expect = 1e-49
Identities = 101/216 (46%), Positives = 140/216 (64%), Gaps = 4/216 (1%)
Query: 8 WSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQADV 67
+SPY NGG+ +AIAG D+ ++A+DTR+S G++I TRD K L +K V+ SGF D
Sbjct: 30 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 89
Query: 68 KALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCV 127
L K++ AR Y+H +NK M+ A+A +LS LY +RFFPYY +N++GGLD EGKG V
Sbjct: 90 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 149
Query: 128 FTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKT 187
+++D VGSY+R + + GS S ++ P LDNQ+ + + PLS A+ LVK
Sbjct: 150 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKD 205
Query: 188 VFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
VF SA ERD+YTGD + I I+ GI E + LRKD
Sbjct: 206 VFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 241
>gb|AAV38524.1| proteasome (prosome, macropain) subunit, beta type, 1 [synthetic
construct] gi|54696302|gb|AAV38523.1| proteasome
(prosome, macropain) subunit, beta type, 1 [synthetic
construct] gi|61367236|gb|AAX42970.1| proteasome subunit
beta type 1 [synthetic construct]
gi|61367228|gb|AAX42969.1| proteasome subunit beta type
1 [synthetic construct]
Length = 242
Score = 198 bits (503), Expect = 1e-49
Identities = 101/216 (46%), Positives = 140/216 (64%), Gaps = 4/216 (1%)
Query: 8 WSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQADV 67
+SPY NGG+ +AIAG D+ ++A+DTR+S G++I TRD K L +K V+ SGF D
Sbjct: 30 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 89
Query: 68 KALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCV 127
L K++ AR Y+H +NK M+ A+A +LS LY +RFFPYY +N++GGLD EGKG V
Sbjct: 90 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 149
Query: 128 FTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKT 187
+++D VGSY+R + + GS S ++ P LDNQ+ + + PLS A+ LVK
Sbjct: 150 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKD 205
Query: 188 VFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
VF SA ERD+YTGD + I I+ GI E + LRKD
Sbjct: 206 VFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 241
>gb|AAH00508.1| Proteasome beta 1 subunit [Homo sapiens]
Length = 241
Score = 198 bits (503), Expect = 1e-49
Identities = 101/216 (46%), Positives = 140/216 (64%), Gaps = 4/216 (1%)
Query: 8 WSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQADV 67
+SPY NGG+ +AIAG D+ ++A+DTR+S G++I TRD K L +K V+ SGF D
Sbjct: 30 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 89
Query: 68 KALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCV 127
L K++ AR Y+H +NK M+ A+A +LS LY +RFFPYY +N++GGLD EGKG V
Sbjct: 90 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 149
Query: 128 FTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKT 187
+++D VGSY+R + + GS S ++ P LDNQ+ + + PLS A+ LVK
Sbjct: 150 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKD 205
Query: 188 VFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
VF SA ERD+YTGD + I I+ GI E + LRKD
Sbjct: 206 VFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 241
>pdb|1IRU|1 Chain 1, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution gi|21465654|pdb|1IRU|M Chain M, Crystal
Structure Of The Mammalian 20s Proteasome At 2.75 A
Resolution
Length = 213
Score = 198 bits (503), Expect = 1e-49
Identities = 101/216 (46%), Positives = 140/216 (64%), Gaps = 4/216 (1%)
Query: 8 WSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQADV 67
+SPY NGG+ +AIAG D+ ++A+DTR+S G++I TRD K L +K V+ SGF D
Sbjct: 2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 61
Query: 68 KALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCV 127
L K++ AR Y+H +NK M+ A+A +LS LY +RFFPYY +N++GGLD EGKG V
Sbjct: 62 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 121
Query: 128 FTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKT 187
+++D VGSY+R + + GS S ++ P LDNQ+ + + PLS A+ LVK
Sbjct: 122 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKD 177
Query: 188 VFASATERDIYTGDKVEIVILNAGGIHREFMDLRKD 223
VF SA ERD+YTGD + I I+ GI E + LRKD
Sbjct: 178 VFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 213
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 369,487,995
Number of Sequences: 2540612
Number of extensions: 14151625
Number of successful extensions: 33690
Number of sequences better than 10.0: 640
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 269
Number of HSP's that attempted gapping in prelim test: 33012
Number of HSP's gapped (non-prelim): 644
length of query: 223
length of database: 863,360,394
effective HSP length: 123
effective length of query: 100
effective length of database: 550,865,118
effective search space: 55086511800
effective search space used: 55086511800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 73 (32.7 bits)
Medicago: description of AC146330.2