BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144514.8 - phase: 0 /pseudo
(555 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 137 1e-30
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 135 3e-30
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 132 4e-29
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 130 1e-28
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 129 2e-28
ref|XP_474837.1| OSJNBa0052O21.12 [Oryza sativa (japonica cultiv... 128 5e-28
gb|AAX95232.1| retrotransposon protein, putative, unclassified [... 127 1e-27
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 124 8e-27
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 122 3e-26
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 122 3e-26
ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cu... 122 4e-26
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 120 9e-26
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 120 9e-26
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta... 119 3e-25
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 119 3e-25
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 117 7e-25
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 117 1e-24
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 117 1e-24
gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (jap... 116 2e-24
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 116 2e-24
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 137 bits (344), Expect = 1e-30
Identities = 70/156 (44%), Positives = 98/156 (61%)
Query: 51 AVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEG 110
A++ K GF +WI + C+ TV + VL+N G IP RGLRQGDPLSPY+FILC E
Sbjct: 375 ALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEV 434
Query: 111 LSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAAS 170
L + IR AE +I+GI + +P++SHLLFADD F KA++ Q ++ IL Y++ S
Sbjct: 435 LIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVS 494
Query: 171 GQAISLPISEIYCNQNVFDALKASITNIIGVQDVLG 206
GQ I+ S I V D++KA I I+G+ ++ G
Sbjct: 495 GQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGG 530
Score = 79.3 bits (194), Expect = 3e-13
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 4/185 (2%)
Query: 370 VAQVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFS 429
+ +VG+ A+IS+ ++PWI G+ + V SLID + W++ ++ +F
Sbjct: 707 IKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFD 766
Query: 430 KDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPEFWM--- 486
+ + + N D L W K G Y+VKS + DL + T L P+
Sbjct: 767 PEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKA 826
Query: 487 GIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPF 546
IW+++ PPK++ + +L +P L+ +G+ C CVS EE + H FQC
Sbjct: 827 YIWKVQCPPKLRH-FLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHP 885
Query: 547 SVQVW 551
+ Q+W
Sbjct: 886 ARQIW 890
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 135 bits (341), Expect = 3e-30
Identities = 69/155 (44%), Positives = 97/155 (62%)
Query: 52 VMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGL 111
++ K GF +WI + C+ TV + VL+N G +P RGLRQGDPLSPY+FILC E L
Sbjct: 442 LLKKMGFCEKWISWIMWCITTVQYRVLLNGQPRGLIVPKRGLRQGDPLSPYLFILCTEVL 501
Query: 112 SSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASG 171
+ IR AE+ ++I+GI + +PS+SHLLFA+D F KA++ Q V+ IL Y+A SG
Sbjct: 502 IANIRKAEQEKLITGIKVATASPSVSHLLFANDSLFFCKANKEQCGVILGILKQYEAVSG 561
Query: 172 QAISLPISEIYCNQNVFDALKASITNIIGVQDVLG 206
Q I+ S I V D +KA I + +G+ + G
Sbjct: 562 QMINFSKSSIQFGHKVGDDIKAEIKSALGIHSIGG 596
Score = 42.7 bits (99), Expect = 0.030
Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 30/158 (18%)
Query: 370 VAQVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFS 429
+ +VG+ A+IS+ ++PWI G+ + V++LID + W++ F+ +F
Sbjct: 773 INRVGSGASISVWEDPWIPAQFPRPAISNGSVIDPSLKVNNLIDSRSNFWNIDFLNEIF- 831
Query: 430 KDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPEFWMGIW 489
+ DVL S ++ ++ K ED +D L+ IW
Sbjct: 832 --VPEDVLLISAMHLGSSTK---------------------EDSLDIKTLKA-----HIW 863
Query: 490 RLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYC 527
+++ PPK+ + + +L +P L+ +G+ C + C
Sbjct: 864 KVQCPPKL-RHFLWQVLSGCVPVTENLRKRGINCDSGC 900
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 132 bits (331), Expect = 4e-29
Identities = 64/151 (42%), Positives = 93/151 (61%)
Query: 52 VMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGL 111
+M+K GF+ W+ + CV TV + + VN + F P RGLRQGDPLSPY+F+LC EG
Sbjct: 793 MMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGF 852
Query: 112 SSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASG 171
S+L+ EE + GI IC+GAPS+SHLLFADD + +A+ G+ Q ++ IL Y+ SG
Sbjct: 853 SALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSG 912
Query: 172 QAISLPISEIYCNQNVFDALKASITNIIGVQ 202
Q I+ S + + N K ++ + +Q
Sbjct: 913 QVINKDKSAVMFSPNTSSLEKGAVMAALNMQ 943
Score = 77.8 bits (190), Expect = 8e-13
Identities = 60/193 (31%), Positives = 88/193 (45%), Gaps = 17/193 (8%)
Query: 372 QVGTCATISILDEPWIKDGRSINDNLP-GADFVRNFCVDSLIDDETKCWDVPFIQ*VF-S 429
+VG + I+I +PWI G S P GA+ V V+ LID T WD + F
Sbjct: 1126 RVGDGSKINIWADPWIPRGWSRKPMTPRGANLVTK--VEELIDPYTGTWDEDLLSQTFWE 1183
Query: 430 KDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCP------- 482
+D+A + + V+ D L W + G ++VKS +++ E + CP
Sbjct: 1184 EDVA--AIKSIPVHVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWES 1241
Query: 483 ---EFWMGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEH 539
+FW +W+L VP KIK + M L R L +G+ T CV ED H
Sbjct: 1242 GDDDFWKKLWKLGVPGKIKH-FLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGH 1300
Query: 540 IFFQCPFSVQVWQ 552
+FF+C +VWQ
Sbjct: 1301 LFFKCKPVKKVWQ 1313
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 130 bits (326), Expect = 1e-28
Identities = 66/149 (44%), Positives = 91/149 (60%)
Query: 55 KTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLSSL 114
K GF+ WI + CV +V ++V +N + P +P RG+RQGDP+SPY+F+LC EGLS L
Sbjct: 610 KLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCL 669
Query: 115 IRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQAI 174
+ E + GI R P ISHLLFADD F KAD Q +KN L +Y +ASGQ I
Sbjct: 670 LHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKI 729
Query: 175 SLPISEIYCNQNVFDALKASITNIIGVQD 203
+L S I+ + DA+K S+ + + V +
Sbjct: 730 NLHKSSIFFGKRCPDAVKISVKSCLQVDN 758
Score = 80.9 bits (198), Expect = 1e-13
Identities = 53/192 (27%), Positives = 93/192 (47%), Gaps = 16/192 (8%)
Query: 373 VGTCATISILDEPWIKDGR-SINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSKD 431
VG TI I + WI R + L + F + V L++++ +CWD I+ +F D
Sbjct: 941 VGDGKTIKIFSDNWIPGFRPQLVTTL--SPFPTDATVSCLMNEDARCWDGDLIRSLFPVD 998
Query: 432 IAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDL-----------MDTTHLR 480
IA ++L + D W +K G+YSV+S + L + M + L
Sbjct: 999 IAKEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLE 1058
Query: 481 CPEFWMGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHI 540
+ W G+W++ P K+K + + E L T QL+ + + CV + ++++ +EH+
Sbjct: 1059 SQKDWKGLWKINAPGKMKIT-LWRAAHECLATGFQLRRRHIPSTDGCV-FCNRDDTVEHV 1116
Query: 541 FFQCPFSVQVWQ 552
F CPF+ Q+W+
Sbjct: 1117 FLFCPFAAQIWE 1128
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 129 bits (325), Expect = 2e-28
Identities = 65/141 (46%), Positives = 90/141 (63%)
Query: 41 YTTLKAYH*RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLS 100
Y +K + V+++ GF+++WI + CV TV +S L+N G +P RGLRQGDPLS
Sbjct: 522 YDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLS 581
Query: 101 PYMFILCVEGLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMK 160
PY+FILC E LS L R A+E ++ GI + RG+P ++HLLFADD F K + +
Sbjct: 582 PYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALS 641
Query: 161 NILITYKAASGQAISLPISEI 181
NIL Y+ ASGQ+I+L S I
Sbjct: 642 NILKKYELASGQSINLAKSAI 662
Score = 48.9 bits (115), Expect = 4e-04
Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 6/183 (3%)
Query: 373 VGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSKDI 432
+G +I++ E W+ P + ++ V LI + K W+V I+ +
Sbjct: 861 IGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLSVHDLICHDVKSWNVEAIRKHLPQ-- 918
Query: 433 AYDVLNTSLVNQVT-NDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPEFWMGIWRL 491
D + +N + D L+W K+G Y+ K+ + L + + L + IW++
Sbjct: 919 YEDQIRKITINALPLQDSLVWLPVKSGEYTTKTGYALAKLNSFPASQLDF-NWQKNIWKI 977
Query: 492 KVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPFSVQVW 551
PK+K + + LP L + + C E L H+ CP++ +VW
Sbjct: 978 HTSPKVKH-FLWKAMKGALPVGEALSRRNIEAEVTCKRCGQTESSL-HLMLLCPYAKKVW 1035
Query: 552 QFA 554
+ A
Sbjct: 1036 ELA 1038
>ref|XP_474837.1| OSJNBa0052O21.12 [Oryza sativa (japonica cultivar-group)]
gi|38345009|emb|CAE01608.2| OSJNBa0052O21.12 [Oryza
sativa (japonica cultivar-group)]
Length = 427
Score = 128 bits (321), Expect = 5e-28
Identities = 65/149 (43%), Positives = 91/149 (60%)
Query: 53 MVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLS 112
++K GF + WI + CV +V ++V +N + P P RGLRQGDP+SPY+F+LC EGLS
Sbjct: 17 LLKLGFADPWIQTVMRCVTSVRYAVRINGELTNPVTPSRGLRQGDPISPYLFLLCTEGLS 76
Query: 113 SLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQ 172
S+++ E +I GI R P ISHLLFADD F ++D Q +K+ L Y ASGQ
Sbjct: 77 SILQKKESMGVIQGIRNGRLGPPISHLLFADDSIFFARSDLHSVQGLKDALQAYCKASGQ 136
Query: 173 AISLPISEIYCNQNVFDALKASITNIIGV 201
I+L S I+ QN + +K S+ + V
Sbjct: 137 KINLQKSSIFFGQNCLEDIKNSVKETLQV 165
>gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62733010|gb|AAX95129.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 127 bits (318), Expect = 1e-27
Identities = 59/141 (41%), Positives = 88/141 (61%)
Query: 52 VMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGL 111
+M+K GF+ W++ + CV +V + + VN + P GLRQGDP+SPY+F +C EG
Sbjct: 1049 MMLKLGFDRNWVFIVMKCVTSVTYRIKVNGEFTEQINPTGGLRQGDPISPYLFFICAEGF 1108
Query: 112 SSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASG 171
S+L+ AEE +S I +C+ APSI+HLLFADD L K DEG ++N+L Y+ SG
Sbjct: 1109 STLLNAAEERGDLSVIKVCQNAPSINHLLFADDSLLLLKTDEGSAACLQNVLSLYERCSG 1168
Query: 172 QAISLPISEIYCNQNVFDALK 192
+ I+ S I ++N+ + K
Sbjct: 1169 ETINKEKSSIMFSRNIKEVNK 1189
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411644|pir||C84530 hypothetical protein
At2g15540 [imported] - Arabidopsis thaliana
Length = 1225
Score = 124 bits (311), Expect = 8e-27
Identities = 62/152 (40%), Positives = 94/152 (61%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
RA+M+K GF +W+ + C+ +V + +L+N G P RG+RQGDP+SP++FILC E
Sbjct: 537 RALMLKMGFAQKWVDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPISPFLFILCTE 596
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
L + ++DAE H I G+ I R +PS SHLLFADD F KAD Q + + +IL Y A
Sbjct: 597 ALVAKLKDAEWHGRIQGLQISRASPSTSHLLFADDSLFFCKADPLQGKEIIDILRLYGEA 656
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNIIGV 201
SGQ ++ S + V ++++ +I +G+
Sbjct: 657 SGQQLNPDKSSVMFGHEVDNSIRNTIKVSLGI 688
Score = 47.8 bits (112), Expect = 0.001
Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 20/191 (10%)
Query: 373 VGTCATISILDEPWIKD--GRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSK 430
+G+ + ++PWI R L D + V+ LID TK W + +Q +
Sbjct: 806 IGSGMLTRVWEDPWIPSFPPRPAKSILNIRD--THLYVNDLIDPVTKQWKLGRLQELVDP 863
Query: 431 DIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPEFWMG--- 487
+L +D W K+G Y+VKS + DL T C + G
Sbjct: 864 SDIPLILGIRPSRTYKSDDFSWSFTKSGNYTVKSGY-WAARDLSRPT---CDLPFQGPSV 919
Query: 488 ------IWRLKVPPKIKKSHVD-DMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHI 540
+W++K K K H + L L T +L + + C +EE + H+
Sbjct: 920 SALQAQVWKIKTTRKFK--HFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHL 977
Query: 541 FFQCPFSVQVW 551
F CP S Q+W
Sbjct: 978 LFLCPPSRQIW 988
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 122 bits (306), Expect = 3e-26
Identities = 61/152 (40%), Positives = 92/152 (60%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
R++++ GF+ +W+ + +CV +V +SVL+N+ G I RGLRQGDPLSP++F+LC E
Sbjct: 556 RSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTE 615
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
GL+ L+ A+ + GI P + HLLFADD KA Q+ V++ IL Y A
Sbjct: 616 GLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNA 675
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNIIGV 201
+GQ I+L S I + V + LK +I +G+
Sbjct: 676 TGQTINLNKSSITFGEKVDEQLKGTIRTCLGI 707
Score = 44.3 bits (103), Expect = 0.010
Identities = 42/164 (25%), Positives = 74/164 (44%), Gaps = 24/164 (14%)
Query: 372 QVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVD------SLIDDETKCWDVPFIQ 425
+VG A++ + +PWI +DN A + +N D +L++ T WD +
Sbjct: 891 RVGDGASLFVWIDPWI------DDNGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEEVLH 944
Query: 426 *VFSKDIAYDVLNTSLVNQVTN--DKLIWKAEKNGIYSVKSTFRLCV----EDLMDTTHL 479
+F + D+L + V + D +WK K+G +SVKS + L ++L +
Sbjct: 945 DLFLPE---DILRIKAIKPVISQADFFVWKLNKSGDFSVKSAYWLAYQTKSQNLRSEVSM 1001
Query: 480 RCPEFWM--GIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV 521
+ + +W L+ PKI K + +L ILP L +G+
Sbjct: 1002 QPSTLGLKTQVWNLQTDPKI-KIFLWKVLSGILPVAENLNGRGM 1044
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 122 bits (306), Expect = 3e-26
Identities = 61/152 (40%), Positives = 92/152 (60%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
R++++ GF+ +W+ + +CV +V +SVL+N+ G I RGLRQGDPLSP++F+LC E
Sbjct: 553 RSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTE 612
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
GL+ L+ A+ + GI P + HLLFADD KA Q+ V++ IL Y A
Sbjct: 613 GLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNA 672
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNIIGV 201
+GQ I+L S I + V + LK +I +G+
Sbjct: 673 TGQTINLNKSSITFGEKVDEQLKGTIRTCLGI 704
Score = 41.6 bits (96), Expect = 0.067
Identities = 45/194 (23%), Positives = 77/194 (39%), Gaps = 48/194 (24%)
Query: 372 QVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVD------SLIDDETKCWDVPFIQ 425
+VG A++ + +PWI +DN A + +N D +L++ T WD +
Sbjct: 888 RVGDGASLFVWIDPWI------DDNGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEEVLH 941
Query: 426 *VFSKDIAYDVLNTSLVNQVTN--DKLIWKAEKNGIYSVKSTFRLCV----EDLMDTTHL 479
+F + D+L + V + D +WK K+G +SVKS + L ++L +
Sbjct: 942 DLFLPE---DILRIKAIKPVISQADFFVWKLNKSGDFSVKSAYWLAYQTKSQNLRSEVSM 998
Query: 480 RCPEFWM--GIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDL 537
+ + +W L+ PKI K + + E+ E
Sbjct: 999 QPSTLGLKTQVWNLQTDPKI-KIFLWKVCGEL------------------------GEST 1033
Query: 538 EHIFFQCPFSVQVW 551
H F CP S Q+W
Sbjct: 1034 NHTLFLCPLSRQIW 1047
>ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49328177|gb|AAT58873.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1264
Score = 122 bits (305), Expect = 4e-26
Identities = 55/150 (36%), Positives = 91/150 (60%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
R +M++ GF+++W+ + CV +V + + +N + P RGLRQGDPLSPY+FI+C E
Sbjct: 938 RHMMLRLGFHDQWVNLVMKCVTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAE 997
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
GLS+L++ A+ I GI +CR P I+HL FADD + +A + Q ++ +L Y+ A
Sbjct: 998 GLSALLQKAQADGKIEGIKVCRDTPRINHLFFADDSLVLMRAGQNDAQELRRVLNIYEVA 1057
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNII 199
SGQ I+ S + + N + + + + +
Sbjct: 1058 SGQVINKDKSSVLFSPNTLQSDRMEVRSAL 1087
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 120 bits (302), Expect = 9e-26
Identities = 60/155 (38%), Positives = 90/155 (57%)
Query: 52 VMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGL 111
VM++ GF RW+ + CV +V + VL+N G P RG+RQGDPLSPY+F+ C E L
Sbjct: 954 VMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVL 1013
Query: 112 SSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASG 171
S+++R AE ++ I G+ I + +ISHLLFADD F +A + + I Y+ ASG
Sbjct: 1014 SNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASG 1073
Query: 172 QAISLPISEIYCNQNVFDALKASITNIIGVQDVLG 206
Q I+ S I Q + + + ++G+ +V G
Sbjct: 1074 QKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRG 1108
Score = 54.3 bits (129), Expect = 1e-05
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 24/196 (12%)
Query: 372 QVGTCATISILDEPWIKD-------GRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFI 424
++G T I ++PW+ G +++++ AD R + + WD
Sbjct: 1269 RLGDGQTTKIWEDPWLPTLPPRPARGPILDEDMKVADLWR---------ENKREWDPVIF 1319
Query: 425 Q*VFSKDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTF------RLCVEDLMDTTH 478
+ V + + + L N D W +N Y+V+S + L E++++
Sbjct: 1320 EGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVATHVNLTEEEIINPLE 1379
Query: 479 LRCPEFWMGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLE 538
P IWRLK+ PKIK + L L T QL+++ + C + +E +
Sbjct: 1380 GDVP-LKQEIWRLKITPKIKH-FIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETIN 1437
Query: 539 HIFFQCPFSVQVWQFA 554
HI F C ++ VW+ A
Sbjct: 1438 HIIFTCSYAQVVWRSA 1453
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 120 bits (302), Expect = 9e-26
Identities = 60/147 (40%), Positives = 92/147 (61%), Gaps = 2/147 (1%)
Query: 57 GFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLSSLIR 116
GF + WI + CV++V + VL+N G IP RGLRQGDPLSPY+F++C E L +++
Sbjct: 597 GFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQ 656
Query: 117 DAEEHRIISGISICRGAPSISHLLFADDCFLFFKA-DEGQTQVMKNILITYKAASGQAIS 175
AE+ I+G+ + RGAP ISHLLFADD + K DE Q+++ I+ Y ASGQ ++
Sbjct: 657 SAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIR-IIEEYSLASGQRVN 715
Query: 176 LPISEIYCNQNVFDALKASITNIIGVQ 202
S IY +++ + + + +G++
Sbjct: 716 YLKSSIYFGKHISEERRCLVKRKLGIE 742
Score = 54.7 bits (130), Expect = 8e-06
Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 14/194 (7%)
Query: 371 AQVGTCATISILDEPWI-----KDGRSINDNLPGADFVRN--FCVDSLIDDETKCWDVPF 423
A +G TI++ +PWI K +++ + + + N V L+ + + W+
Sbjct: 924 AVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNL 983
Query: 424 IQ*VFSKDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDL------MDTT 477
+ +F + ++L + T D+ W+ ++G YSVKS + + E + +
Sbjct: 984 VSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVL 1043
Query: 478 HLRCPEFWMGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDL 537
+ IW+L VPPKI + ++ L L + + CV E +
Sbjct: 1044 QPSLDPIFQQIWKLDVPPKI-HHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETV 1102
Query: 538 EHIFFQCPFSVQVW 551
H+ F+CPF+ W
Sbjct: 1103 NHLLFKCPFARLTW 1116
>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411392|pir||B84497 hypothetical protein
At2g11240 [imported] - Arabidopsis thaliana
Length = 1044
Score = 119 bits (298), Expect = 3e-25
Identities = 64/157 (40%), Positives = 91/157 (57%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
+ VM + GF+ WI + C+ TV +S L+N A G P RGLRQGDPLSP++FI+C E
Sbjct: 416 KLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSE 475
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
LS L R A+ + G+ + +G P ++HLLFADD F ++D + IL Y+ A
Sbjct: 476 VLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEA 535
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNIIGVQDVLG 206
SGQ I+ S I ++ D +K I+G+Q V G
Sbjct: 536 SGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGG 572
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 119 bits (297), Expect = 3e-25
Identities = 57/156 (36%), Positives = 92/156 (58%)
Query: 51 AVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEG 110
A+M + GF+ +W + C+ T +S+L+N V IP RG+RQGDP+SPY+++LC EG
Sbjct: 46 AIMKQMGFSEKWCNWIMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEG 105
Query: 111 LSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAAS 170
LS+LI+ + + + + G R P+ISHLLFA D +F KA + + N+L Y+ AS
Sbjct: 106 LSALIQASIKAKQLHGFKASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKAS 165
Query: 171 GQAISLPISEIYCNQNVFDALKASITNIIGVQDVLG 206
GQA++ S I + + ++ ++G+ G
Sbjct: 166 GQAVNFQKSAILFGKGLDFRTSEQLSQLLGIYKTEG 201
Score = 50.8 bits (120), Expect = 1e-04
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 447 NDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPE--------FWMGIWRLKVPPKIK 498
ND + W +G YSVKS + L + L H P + IW+ PPKIK
Sbjct: 453 NDAITWIYTHDGNYSVKSGYHL-LRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIK 511
Query: 499 KSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPFSVQVWQFA 554
LPT LK + + C ED+ H+ FQC S ++W+ A
Sbjct: 512 HFWWRSA-HNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQA 566
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488322|pir||T00814 RNA-directed DNA
polymerase homolog At2g41580 - Arabidopsis thaliana
Length = 1094
Score = 117 bits (294), Expect = 7e-25
Identities = 65/158 (41%), Positives = 88/158 (55%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
+ +++ GFN+ WI M CV +V +SVL+N G P RGLRQGDPLSP++F+LC E
Sbjct: 319 KGILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTE 378
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
L ++ AE+ ISGI PS++HLLFADD L KA + + + + L Y
Sbjct: 379 ALIHILNQAEKIGKISGIQFNGTGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHI 438
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNIIGVQDVLGT 207
SGQ I+ S I V + K I N G+Q GT
Sbjct: 439 SGQMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGT 476
Score = 55.5 bits (132), Expect = 4e-06
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 10/151 (6%)
Query: 408 VDSLIDDETKCWDVPFIQ*VFS-KDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTF 466
V LID ++ W++ ++ +F K+I + ++ D W +G+Y+VKS +
Sbjct: 690 VSQLIDPFSRNWNLNMLRDLFPWKEIQIICQQRPMASR--QDSFCWFGTNHGLYTVKSEY 747
Query: 467 RLCVEDLMDTTHLRCPE------FWMGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKG 520
LC + E + IW L PKIK + +L + +L+ +G
Sbjct: 748 DLCSRQVHKQMFKEAEEQPSLNPLFGKIWNLNSAPKIKV-FLWKVLKGAVAVEDRLRTRG 806
Query: 521 V*CPTYCVSYEHQEEDLEHIFFQCPFSVQVW 551
V C + E L HI FQCP + QVW
Sbjct: 807 VLIEDGCSMCPEKNETLNHILFQCPLARQVW 837
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 117 bits (292), Expect = 1e-24
Identities = 58/148 (39%), Positives = 89/148 (59%)
Query: 55 KTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLSSL 114
K GF +RW+ + +CV TV +SV N + F P RGLRQG+PLSP++F+ +GLS L
Sbjct: 1235 KLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADGLSLL 1294
Query: 115 IRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQAI 174
+++ ++ + ICR AP IS+LLFADD LFFKA++ + +V+K +L Y +GQ I
Sbjct: 1295 LKEKVAQNSLTPLKICRQAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQLI 1354
Query: 175 SLPISEIYCNQNVFDALKASITNIIGVQ 202
+ I + ++ I N + V+
Sbjct: 1355 NPAKCSILFGEASPSSVSEDIRNTLQVE 1382
Score = 48.1 bits (113), Expect = 7e-04
Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 372 QVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSKD 431
++G ++ I +PWI S A+ + D + +D T WD I F K
Sbjct: 1565 RIGNGNSVRIWRDPWIPRDLSRRPVSSKANCRLKWVSDLIAEDGT--WDSAKINQYFLKI 1622
Query: 432 IAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVE-----DLMDTTHLRCPEFWM 486
A + + ++ D + W +K G +SV+S ++L ++ + ++ R + W
Sbjct: 1623 DADIIQKICISARLEEDFIAWHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRLNKSWE 1682
Query: 487 GIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPF 546
IW+ VP K+ + + L T K + + C + ++ED H +C
Sbjct: 1683 LIWKCNVPQKV-RIFAWRVASNSLATMENKKKRNLERFDVCGICDREKEDAGHALCRCVH 1741
Query: 547 SVQVW 551
+ +W
Sbjct: 1742 ANSLW 1746
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
Length = 1333
Score = 117 bits (292), Expect = 1e-24
Identities = 60/152 (39%), Positives = 89/152 (58%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
RA++ GF+ +W+ + + +V +SVL+N+ A G +P RGLRQGDPLSP++F+LC E
Sbjct: 592 RALLDALGFHQKWVGWIMFMISSVSYSVLINDKAFGNIVPSRGLRQGDPLSPFLFVLCSE 651
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
GL+ L+ AE ++SGI P+I HLLFADD KA + + V+K+I Y
Sbjct: 652 GLTHLMNRAERQGLLSGIRFSENGPAIHHLLFADDSLFMCKAVKEEVTVIKSIFKVYGDV 711
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNIIGV 201
+GQ I+ S I V + K I +G+
Sbjct: 712 TGQRINYDKSSITLGALVDEDCKVWIQAELGI 743
Score = 50.8 bits (120), Expect = 1e-04
Identities = 51/197 (25%), Positives = 86/197 (42%), Gaps = 22/197 (11%)
Query: 372 QVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVD------SLIDDETKCWDVPFIQ 425
+VG ++ S+ +PWI D N P ++F V+ LI+ E +C ++
Sbjct: 927 KVGNGSSTSVWMDPWIYD------NDPRLPLQKHFSVNLDLRVHDLINVEDRCRRRDRLE 980
Query: 426 *VF-SKDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVE----DLMDTTHLR 480
+F DI V +V+ +D +W K+G YSVKS + L + +L+ ++
Sbjct: 981 ELFYPADIEIIVKRNPVVSM--DDFWVWLHSKSGEYSVKSGYWLAFQTNKPELIREARVQ 1038
Query: 481 CPEFWMG--IWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLE 538
+ IW PKIK + +L LP Q+ +G+ C + E +
Sbjct: 1039 PSTNGLKEKIWSTLTSPKIKL-FLWRILSSALPVAYQIIRRGMPIDPRCQVCGEEGESIN 1097
Query: 539 HIFFQCPFSVQVWQFAG 555
H+ F C + QVW +G
Sbjct: 1098 HVLFTCSLARQVWALSG 1114
>gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536094|ref|NP_922349.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|13786450|gb|AAK39575.1| putative
reverse transcriptase [Oryza sativa]
Length = 791
Score = 116 bits (291), Expect = 2e-24
Identities = 59/150 (39%), Positives = 87/150 (57%)
Query: 53 MVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLS 112
M K GF RW+ + CV +V + V N + F P RGLRQGDPLSP++F+ +GLS
Sbjct: 3 MNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLSPFLFLFVADGLS 62
Query: 113 SLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQ 172
L+++ ++ +CR AP ISHLLFADD LFFKA + + +V+K +L +Y +GQ
Sbjct: 63 LLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQ 122
Query: 173 AISLPISEIYCNQNVFDALKASITNIIGVQ 202
I+ I A+ +I+ I+ V+
Sbjct: 123 LINPAKCSILMGGASTPAVSEAISEILQVE 152
Score = 64.7 bits (156), Expect = 7e-09
Identities = 48/185 (25%), Positives = 82/185 (43%), Gaps = 8/185 (4%)
Query: 372 QVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSKD 431
+VG +I I +PW+ S A+ + D + +D + WDVP I F
Sbjct: 335 RVGNGNSIRIWRDPWLPRDHSRRPITGKANCRLKWVSDLITEDGS--WDVPKIHQYFHNL 392
Query: 432 IAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLC-----VEDLMDTTHLRCPEFWM 486
A +LN + ++ D + W +KNG++SV+S +RL +E+ + + W
Sbjct: 393 DAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWE 452
Query: 487 GIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPF 546
IW+ KVP K+ K + L T + K + + C + + ED H +C
Sbjct: 453 MIWKCKVPQKV-KIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQ 511
Query: 547 SVQVW 551
+ Q+W
Sbjct: 512 ASQLW 516
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 116 bits (291), Expect = 2e-24
Identities = 69/172 (40%), Positives = 98/172 (56%), Gaps = 8/172 (4%)
Query: 27 DFILLLLLLAKS*NYTTLKAYH*RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGP 86
DF L L L+K+ Y + + K GF N W + CV +V +SV +N + + P
Sbjct: 557 DFCALKLDLSKA--YDRVDWGFLDGALQKLGFGNIWRKWIMSCVTSVRYSVRLNGNMLEP 614
Query: 87 FIPGRGLRQGDPLSPYMFILCVEGLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCF 146
F P RGLR+GDPL+PY+F+ +GLS++++ + R I + +CR AP +SHLLFADD
Sbjct: 615 FYPTRGLREGDPLNPYLFLFIADGLSNILQRRRDERQIQPLKVCRSAPGVSHLLFADDSL 674
Query: 147 LFFKADEGQTQVMKNILITYKAASGQAI-----SLPISEIYCNQNVFDALKA 193
LFFKA+ Q +K L Y+ +GQ I SL S + C Q D +KA
Sbjct: 675 LFFKAEVIQATRIKEALDLYERCTGQLINPKECSLLFSAL-CPQERQDGIKA 725
Score = 51.2 bits (121), Expect = 8e-05
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 9/135 (6%)
Query: 372 QVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSKD 431
++G + I W+ G ++ L + R V LI +TK W+ P I+ + ++
Sbjct: 913 RIGDGSKTKIWRNHWVAHGENLKI-LEKKTWNRVIYVRELIVTDTKTWNEPLIRHIIREE 971
Query: 432 IAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCP--------E 483
A ++L + + D W EK GI+SV+S +RL T+ +
Sbjct: 972 DADEILKIRIPQREEEDFPAWHYEKTGIFSVRSVYRLAWNLARKTSEQASSSSGGADGRK 1031
Query: 484 FWMGIWRLKVPPKIK 498
W +W+ V PK++
Sbjct: 1032 IWDNVWKANVQPKVR 1046
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.343 0.152 0.517
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 875,528,040
Number of Sequences: 2540612
Number of extensions: 34725008
Number of successful extensions: 109145
Number of sequences better than 10.0: 597
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 239
Number of HSP's that attempted gapping in prelim test: 108221
Number of HSP's gapped (non-prelim): 813
length of query: 555
length of database: 863,360,394
effective HSP length: 133
effective length of query: 422
effective length of database: 525,458,998
effective search space: 221743697156
effective search space used: 221743697156
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 78 (34.7 bits)
Medicago: description of AC144514.8